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{{CL
{{CL
|id=CL:0002202
|alt_id=CL:1000407
|name=epithelial cell of tracheobronchial tree
|namespace=cell
|def="An epithelial cell of the tracheobronchial tree." [GOC:tfm]
|xref=FMA:66816
|is_a=CL:0002632
|synonym=
|comment=
|comment=
|alt_id=CL:1000407
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-02T02:09:14Z
|def="An epithelial cell of the tracheobronchial tree." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002202
|is_a=CL:0002632
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=epithelial cell of tracheobronchial tree
|namespace=FANTOM
|obo_creation_date=2010-09-02T02:09:14Z
|part_of=UBERON:0007196
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:66816
}}
}}

Latest revision as of 16:41, 12 September 2014

Name:epithelial cell of tracheobronchial tree
Namespace:FANTOM
Definition:"An epithelial cell of the tracheobronchial tree." [GOC:tfm]
Xrefs:
links:
FMA:66816
Alt_id: CL:1000407
Created by:tmeehan
Creation date:2010-09-02T02:09:14Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002632(epithelial cell of lower respiratory tract)
part_of:UBERON:0007196(tracheobronchial tree)



Children


is a:CL:0000307 (tracheal epithelial cell),CL:0002328 (bronchial epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002202 (epithelial cell of tracheobronchial tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_d910ebc391545db6ad936657eba0266cp@chr4:88563185..88563192, -
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_d910ebc391545db6ad936657eba0266cp@chr4:88563185..88563192, -
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_d910ebc391545db6ad936657eba0266cp@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_d910ebc391545db6ad936657eba0266cp@chr13:115722413..115722430, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_d910ebc391545db6ad936657eba0266cp@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_d910ebc391545db6ad936657eba0266cp@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_d910ebc391545db6ad936657eba0266cp@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_d910ebc391545db6ad936657eba0266cp@chr13:72401408..72401416, -
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_d910ebc391545db6ad936657eba0266cp1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_d910ebc391545db6ad936657eba0266cp@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_d910ebc391545db6ad936657eba0266cp@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_d910ebc391545db6ad936657eba0266cp@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_d910ebc391545db6ad936657eba0266cp@chr11:100006864..100006873, +
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_d910ebc391545db6ad936657eba0266cp@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_d910ebc391545db6ad936657eba0266cp1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_d910ebc391545db6ad936657eba0266cp@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_d910ebc391545db6ad936657eba0266cp@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_d910ebc391545db6ad936657eba0266cp@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_d910ebc391545db6ad936657eba0266cp@chr16:32641594..32641601, +
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_d910ebc391545db6ad936657eba0266cp@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_d910ebc391545db6ad936657eba0266cp@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_d910ebc391545db6ad936657eba0266cp@chr9:110941233..110941240, +
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_d910ebc391545db6ad936657eba0266cp@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_d910ebc391545db6ad936657eba0266cp@chr5:135420996..135421000, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_d910ebc391545db6ad936657eba0266cp3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_d910ebc391545db6ad936657eba0266cp@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_d910ebc391545db6ad936657eba0266cp@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_d910ebc391545db6ad936657eba0266cp@chr13:72401408..72401416, -
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_d910ebc391545db6ad936657eba0266cp@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_d910ebc391545db6ad936657eba0266cp@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_d910ebc391545db6ad936657eba0266cp@chr6:147338308..147338339, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_d910ebc391545db6ad936657eba0266cp@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_d910ebc391545db6ad936657eba0266cp@chr6:147205603..147205610, +
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_d910ebc391545db6ad936657eba0266cp@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_d910ebc391545db6ad936657eba0266cp@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_d910ebc391545db6ad936657eba0266cp@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_d910ebc391545db6ad936657eba0266cp@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_d910ebc391545db6ad936657eba0266cp@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_d910ebc391545db6ad936657eba0266cp@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_d910ebc391545db6ad936657eba0266cp@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_d910ebc391545db6ad936657eba0266cp2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_d910ebc391545db6ad936657eba0266cp3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_d910ebc391545db6ad936657eba0266cp@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_d910ebc391545db6ad936657eba0266cp@chr1:108303887..108303893, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_d910ebc391545db6ad936657eba0266cp@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_d910ebc391545db6ad936657eba0266cp@chr2:164393992..164394012, -
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_d910ebc391545db6ad936657eba0266cp@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_d910ebc391545db6ad936657eba0266cp@chr2:164393992..164394012, -
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_d910ebc391545db6ad936657eba0266cp@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_d910ebc391545db6ad936657eba0266cp@chr5:91199084..91199088, -
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_d910ebc391545db6ad936657eba0266cp2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_d910ebc391545db6ad936657eba0266cp@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_d910ebc391545db6ad936657eba0266cp@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_d910ebc391545db6ad936657eba0266cp@chr11:86461733..86461747, -
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_d910ebc391545db6ad936657eba0266cp@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_d910ebc391545db6ad936657eba0266cp@chr5:91198876..91198885, +
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_d910ebc391545db6ad936657eba0266cp@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_d910ebc391545db6ad936657eba0266cp@chr17:25885558..25885567, +
4.4e-78FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_1e8983dbffc1e2e1cc7e60b7aa9a7859p@chr7:135018332..135018336, +
4.4e-78FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_1e8983dbffc1e2e1cc7e60b7aa9a7859p@chr7:135018332..135018336, +
5.16e-78FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_83bd02d50b7c34a1f59934b85d3ccf74p@chr3:189632708..189632721, -
5.16e-78FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_83bd02d50b7c34a1f59934b85d3ccf74p@chr3:189632708..189632721, -
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr11:29642912..29642916, -
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_7dbcf00405f723e9c8db14fd31ccd2c3p3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr11:4164303..4164316, +
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_7dbcf00405f723e9c8db14fd31ccd2c3p3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr11:100002128..100002131, +
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_7dbcf00405f723e9c8db14fd31ccd2c3p@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_7dbcf00405f723e9c8db14fd31ccd2c3p@chr11:29642912..29642916, -
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_56224a8fdf041debeae31a3bb54ded39p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_56224a8fdf041debeae31a3bb54ded39p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_56224a8fdf041debeae31a3bb54ded39p@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_56224a8fdf041debeae31a3bb54ded39p@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_56224a8fdf041debeae31a3bb54ded39p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_56224a8fdf041debeae31a3bb54ded39p@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_56224a8fdf041debeae31a3bb54ded39p@chr15:38385124..38385138, +
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_56224a8fdf041debeae31a3bb54ded39p@chr19:47928736..47928764, +
5.88e-57FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_ae4ace974f5be38024bd1ac89a5c4e7dp@chr10:73679250..73679255, -
5.88e-57FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_ae4ace974f5be38024bd1ac89a5c4e7dp@chr10:73679250..73679255, -
5.25e-54FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_f6edd8b69656b592fa820d93902086b5p@chr9:26747081..26747110, +
5.25e-54FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_f6edd8b69656b592fa820d93902086b5p@chr9:26747081..26747110, +

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