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{{CL
{{CL
|id=CL:0002613
|alt_id=
|name=striatum neuron
|namespace=cell
|def="A neuron of the striatum." [GOC:tfm]
|xref=
|is_a=CL:0000117
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:47:12Z
|def="A neuron of the striatum." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002613
|is_a=CL:0012001
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=striatum neuron
|namespace=FANTOM
|obo_creation_date=2011-03-06T07:47:12Z
|part_of=UBERON:0002435
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:striatum neuron
Namespace:FANTOM
Definition:"A neuron of the striatum." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:47:12Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0012001(neuron of the forebrain)
part_of:UBERON:0002435(striatum)



Children


derives from:FF:0000209 (mouse striatal neuron sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002613 (striatum neuron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr13:104125901..104125906,-#_b564997e81fb6a53c37d118b26ebf713p@chr13:104125901..104125906, -
1.58e-86FFCP PHASE1:Mm9::chr19:55963422..55963433,+#_b564997e81fb6a53c37d118b26ebf713p@chr19:55963422..55963433, +
1.58e-86FFCP PHASE2:Mm9::chr19:55967635..55967644,+#_b564997e81fb6a53c37d118b26ebf713p60@Tcf7l2
1.58e-86FFCP PHASE1:Mm9::chr19:55967614..55967621,+#_b564997e81fb6a53c37d118b26ebf713p61@Tcf7l2
1.58e-86FFCP PHASE2:Mm9::chr19:55967180..55967189,+#_b564997e81fb6a53c37d118b26ebf713p@chr19:55967180..55967189, +
1.58e-86FFCP PHASE2:Mm9::chr9:111254465..111254474,+#_b564997e81fb6a53c37d118b26ebf713p@chr9:111254465..111254474, +
1.58e-86FFCP PHASE2:Mm9::chr19:55967776..55967781,+#_b564997e81fb6a53c37d118b26ebf713p55@Tcf7l2
1.58e-86FFCP PHASE1:Mm9::chr19:55967635..55967644,+#_b564997e81fb6a53c37d118b26ebf713p60@Tcf7l2
1.58e-86FFCP PHASE2:Mm9::chr19:55967230..55967234,+#_b564997e81fb6a53c37d118b26ebf713p@chr19:55967230..55967234, +
1.58e-86FFCP PHASE1:Mm9::chr9:111254465..111254474,+#_b564997e81fb6a53c37d118b26ebf713p@chr9:111254465..111254474, +
1.58e-86FFCP PHASE1:Mm9::chr19:55967180..55967189,+#_b564997e81fb6a53c37d118b26ebf713p@chr19:55967180..55967189, +
1.58e-86FFCP PHASE1:Mm9::chr19:55967776..55967781,+#_b564997e81fb6a53c37d118b26ebf713p55@Tcf7l2
1.58e-86FFCP PHASE1:Mm9::chr19:55967230..55967234,+#_b564997e81fb6a53c37d118b26ebf713p@chr19:55967230..55967234, +
1.58e-86FFCP PHASE2:Mm9::chr19:55963422..55963433,+#_b564997e81fb6a53c37d118b26ebf713p@chr19:55963422..55963433, +
1.58e-86FFCP PHASE1:Mm9::chr13:104125901..104125906,-#_b564997e81fb6a53c37d118b26ebf713p@chr13:104125901..104125906, -
1.58e-86FFCP PHASE2:Mm9::chr19:55967614..55967621,+#_b564997e81fb6a53c37d118b26ebf713p61@Tcf7l2
1.33e-65FFCP PHASE1:Mm9::chr5:64041548..64041555,-#_8f862f9ca3cecb884c9fbcb08d52610dp1@ENSMUST00000067917
1.33e-65FFCP PHASE2:Mm9::chr19:55969438..55969450,+#_8f862f9ca3cecb884c9fbcb08d52610dp53@Tcf7l2
1.33e-65FFCP PHASE1:Mm9::chr19:55967883..55967888,+#_8f862f9ca3cecb884c9fbcb08d52610dp57@Tcf7l2
1.33e-65FFCP PHASE2:Mm9::chr9:91273452..91273461,+#_8f862f9ca3cecb884c9fbcb08d52610dp13@Zic4
1.33e-65FFCP PHASE1:Mm9::chr9:91273452..91273461,+#_8f862f9ca3cecb884c9fbcb08d52610dp13@Zic4
1.33e-65FFCP PHASE2:Mm9::chr5:64041548..64041555,-#_8f862f9ca3cecb884c9fbcb08d52610dp1@ENSMUST00000067917
1.33e-65FFCP PHASE2:Mm9::chr19:55967883..55967888,+#_8f862f9ca3cecb884c9fbcb08d52610dp57@Tcf7l2
1.33e-65FFCP PHASE1:Mm9::chr19:55969438..55969450,+#_8f862f9ca3cecb884c9fbcb08d52610dp53@Tcf7l2
3.65e-65FFCP PHASE2:Mm9::chr16:72563657..72563666,+#_70637327898675c9698bea6bfc5605c0p@chr16:72563657..72563666, +
3.65e-65FFCP PHASE1:Mm9::chr16:72563657..72563666,+#_70637327898675c9698bea6bfc5605c0p@chr16:72563657..72563666, +
3.28e-58FFCP PHASE2:Mm9::chr2:142199794..142199811,+#_8ffe64c7cc4aa315ef7e62ed45e57ee8p@chr2:142199794..142199811, +
3.28e-58FFCP PHASE2:Mm9::chr19:47088967..47088976,+#_8ffe64c7cc4aa315ef7e62ed45e57ee8p3@Ina
3.28e-58FFCP PHASE1:Mm9::chr19:47088967..47088976,+#_8ffe64c7cc4aa315ef7e62ed45e57ee8p3@Ina
3.28e-58FFCP PHASE1:Mm9::chr2:142199794..142199811,+#_8ffe64c7cc4aa315ef7e62ed45e57ee8p@chr2:142199794..142199811, +
4.9e-53FFCP PHASE1:Mm9::chr19:55973086..55973096,+#_d5100986a61645e776fb27ca046d0f49p@chr19:55973086..55973096, +
4.9e-53FFCP PHASE2:Mm9::chr19:55973086..55973096,+#_d5100986a61645e776fb27ca046d0f49p@chr19:55973086..55973096, +
4.9e-53FFCP PHASE2:Mm9::chr9:58050662..58050673,+#_d5100986a61645e776fb27ca046d0f49p1@1600029O15Rik
4.9e-53FFCP PHASE2:Mm9::chr19:55968962..55968965,+#_d5100986a61645e776fb27ca046d0f49p58@Tcf7l2
4.9e-53FFCP PHASE1:Mm9::chr9:58050662..58050673,+#_d5100986a61645e776fb27ca046d0f49p1@1600029O15Rik
4.9e-53FFCP PHASE1:Mm9::chr19:55968962..55968965,+#_d5100986a61645e776fb27ca046d0f49p58@Tcf7l2
4.9e-53FFCP PHASE1:Mm9::chr6:23198538..23198548,+#_d5100986a61645e776fb27ca046d0f49p@chr6:23198538..23198548, +
4.9e-53FFCP PHASE2:Mm9::chr6:23198538..23198548,+#_d5100986a61645e776fb27ca046d0f49p@chr6:23198538..23198548, +
5.51e-52FFCP PHASE1:Mm9::chr19:55991857..55991867,+#_ba86737a0174fc7a1db35ab98a54dab3p@chr19:55991857..55991867, +
5.51e-52FFCP PHASE2:Mm9::chr19:55991857..55991867,+#_ba86737a0174fc7a1db35ab98a54dab3p@chr19:55991857..55991867, +
3.27e-44FFCP PHASE1:Mm9::chr9:91273186..91273211,+#_0e6a9fd91af51d497ed3e9d5fdf6fc94p9@Zic4
3.27e-44FFCP PHASE1:Mm9::chr9:69608895..69608900,+#_0e6a9fd91af51d497ed3e9d5fdf6fc94p2@B230323A14Rik
3.27e-44FFCP PHASE2:Mm9::chr9:69608895..69608900,+#_0e6a9fd91af51d497ed3e9d5fdf6fc94p2@B230323A14Rik
3.27e-44FFCP PHASE2:Mm9::chr9:91273186..91273211,+#_0e6a9fd91af51d497ed3e9d5fdf6fc94p9@Zic4
4.58e-44FFCP PHASE1:Mm9::chr19:56006193..56006206,+#_089ab9d76c1174e170df94b24dd1264dp@chr19:56006193..56006206, +
4.58e-44FFCP PHASE2:Mm9::chr19:56006193..56006206,+#_089ab9d76c1174e170df94b24dd1264dp@chr19:56006193..56006206, +
8.97e-44FFCP PHASE1:Mm9::chr19:47098538..47098549,+#_e89b8797f95b3bc3edc65179059b9e6fp@chr19:47098538..47098549, +
8.97e-44FFCP PHASE2:Mm9::chr19:47098538..47098549,+#_e89b8797f95b3bc3edc65179059b9e6fp@chr19:47098538..47098549, +
1.75e-43FFCP PHASE1:Mm9::chr7:69568132..69568141,-#_c03caf0a6950ae83afe461986304dcfdp@chr7:69568132..69568141, -
1.75e-43FFCP PHASE2:Mm9::chr7:69568132..69568141,-#_c03caf0a6950ae83afe461986304dcfdp@chr7:69568132..69568141, -
2.45e-43FFCP PHASE2:Mm9::chr5:120881918..120881921,+#_926d995bfdb0a2216b1d9a93f6df29a7p5@Lhx5
2.45e-43FFCP PHASE1:Mm9::chr5:120881918..120881921,+#_926d995bfdb0a2216b1d9a93f6df29a7p5@Lhx5
2.45e-43FFCP PHASE2:Mm9::chr5:120881939..120881946,+#_926d995bfdb0a2216b1d9a93f6df29a7p2@Lhx5
2.45e-43FFCP PHASE1:Mm9::chr5:120881939..120881946,+#_926d995bfdb0a2216b1d9a93f6df29a7p2@Lhx5
1.7e-39FFCP PHASE1:Mm9::chr3:109948434..109948438,+#_25eb756ac063bb512b7809c591d00556p@chr3:109948434..109948438, +
1.7e-39FFCP PHASE2:Mm9::chr3:109948434..109948438,+#_25eb756ac063bb512b7809c591d00556p@chr3:109948434..109948438, +
1.7e-39FFCP PHASE2:Mm9::chr13:78302358..78302367,+#_25eb756ac063bb512b7809c591d00556p@chr13:78302358..78302367, +
1.7e-39FFCP PHASE2:Mm9::chr9:91273474..91273484,+#_25eb756ac063bb512b7809c591d00556p11@Zic4
1.7e-39FFCP PHASE1:Mm9::chr13:78302358..78302367,+#_25eb756ac063bb512b7809c591d00556p@chr13:78302358..78302367, +
1.7e-39FFCP PHASE2:Mm9::chr1:91476779..91476790,+#_25eb756ac063bb512b7809c591d00556p@chr1:91476779..91476790, +
1.7e-39FFCP PHASE1:Mm9::chr1:91476779..91476790,+#_25eb756ac063bb512b7809c591d00556p@chr1:91476779..91476790, +
1.7e-39FFCP PHASE1:Mm9::chr9:91273474..91273484,+#_25eb756ac063bb512b7809c591d00556p11@Zic4
4.15e-39FFCP PHASE2:Mm9::chr3:55337914..55337917,+#_ff4c2e4a413007f99d0416866df2a4abp@chr3:55337914..55337917, +
4.15e-39FFCP PHASE1:Mm9::chr3:55337914..55337917,+#_ff4c2e4a413007f99d0416866df2a4abp@chr3:55337914..55337917, +
1.17e-38FFCP PHASE1:Mm9::chr19:56007662..56007673,+#_9304afcc83f88108d55d1f5434e1d783p@chr19:56007662..56007673, +
1.17e-38FFCP PHASE2:Mm9::chr19:56007662..56007673,+#_9304afcc83f88108d55d1f5434e1d783p@chr19:56007662..56007673, +
1.56e-38FFCP PHASE1:Mm9::chr19:55969635..55969644,+#_65f6b8d01b5396127eb3fe7e9fa011a5p47@Tcf7l2
1.56e-38FFCP PHASE2:Mm9::chr19:55969635..55969644,+#_65f6b8d01b5396127eb3fe7e9fa011a5p47@Tcf7l2
1.56e-38FFCP PHASE2:Mm9::chr19:55969404..55969417,+#_65f6b8d01b5396127eb3fe7e9fa011a5p43@Tcf7l2
1.56e-38FFCP PHASE1:Mm9::chr19:55969404..55969417,+#_65f6b8d01b5396127eb3fe7e9fa011a5p43@Tcf7l2
2.09e-38FFCP PHASE1:Mm9::chr19:55991838..55991852,+#_92aca9ac17d28091a4ee29d22d1111e7p41@Tcf7l2
2.09e-38FFCP PHASE2:Mm9::chr19:55991838..55991852,+#_92aca9ac17d28091a4ee29d22d1111e7p41@Tcf7l2
3.73e-38FFCP PHASE1:Mm9::chr18:78402606..78402617,-#_446858d3f5b598cc47e9dc0f3646b597p7@Slc14a2
3.73e-38FFCP PHASE2:Mm9::chr18:78402606..78402617,-#_446858d3f5b598cc47e9dc0f3646b597p7@Slc14a2
6.64e-38FFCP PHASE2:Mm9::chr13:95587649..95587666,+#_f501a72e056b7594769957d091885785p@chr13:95587649..95587666, +
6.64e-38FFCP PHASE1:Mm9::chr13:95587649..95587666,+#_f501a72e056b7594769957d091885785p@chr13:95587649..95587666, +
1.18e-37FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_ce88175702911cd7e9fcd40f5816709ep63@Tcf7l2
1.18e-37FFCP PHASE2:Mm9::chr12:28021707..28021716,-#_ce88175702911cd7e9fcd40f5816709ep@chr12:28021707..28021716, -
1.18e-37FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_ce88175702911cd7e9fcd40f5816709ep63@Tcf7l2
1.18e-37FFCP PHASE1:Mm9::chr12:28021707..28021716,-#_ce88175702911cd7e9fcd40f5816709ep@chr12:28021707..28021716, -
1.58e-37FFCP PHASE2:Mm9::chr9:50536361..50536371,-#_469e0dde18b70188a6c1feb93f047638p12@Dixdc1
1.58e-37FFCP PHASE1:Mm9::chr9:50536361..50536371,-#_469e0dde18b70188a6c1feb93f047638p12@Dixdc1
3.67e-34FFCP PHASE1:Mm9::chr19:55967163..55967174,+#_db00173da5f047729586c00121b69029p@chr19:55967163..55967174, +
3.67e-34FFCP PHASE1:Mm9::chr11:36491183..36491192,-#_db00173da5f047729586c00121b69029p23@Odz2
3.67e-34FFCP PHASE2:Mm9::chr19:55969980..55969987,+#_db00173da5f047729586c00121b69029p37@Tcf7l2
3.67e-34FFCP PHASE1:Mm9::chr9:91273412..91273420,+#_db00173da5f047729586c00121b69029p7@Zic4
3.67e-34FFCP PHASE1:Mm9::chr19:55969980..55969987,+#_db00173da5f047729586c00121b69029p37@Tcf7l2
3.67e-34FFCP PHASE2:Mm9::chr8:90484707..90484721,-#_db00173da5f047729586c00121b69029p@chr8:90484707..90484721, -
3.67e-34FFCP PHASE2:Mm9::chr11:36491183..36491192,-#_db00173da5f047729586c00121b69029p23@Odz2
3.67e-34FFCP PHASE2:Mm9::chr19:55969998..55970001,+#_db00173da5f047729586c00121b69029p40@Tcf7l2
3.67e-34FFCP PHASE2:Mm9::chr9:91273412..91273420,+#_db00173da5f047729586c00121b69029p7@Zic4
3.67e-34FFCP PHASE1:Mm9::chr19:55969998..55970001,+#_db00173da5f047729586c00121b69029p40@Tcf7l2
3.67e-34FFCP PHASE1:Mm9::chr8:90484707..90484721,-#_db00173da5f047729586c00121b69029p@chr8:90484707..90484721, -
3.67e-34FFCP PHASE2:Mm9::chr19:55967163..55967174,+#_db00173da5f047729586c00121b69029p@chr19:55967163..55967174, +
1.31e-33FFCP PHASE1:Mm9::chr19:55970047..55970056,+#_d497f347d7c99dd919312b8b0c78359cp56@Tcf7l2
1.31e-33FFCP PHASE2:Mm9::chr19:55970047..55970056,+#_d497f347d7c99dd919312b8b0c78359cp56@Tcf7l2
1.69e-33FFCP PHASE1:Mm9::chr7:17478458..17478472,+#_02252e78ae09d7b38611a6c0c4f280adp@chr7:17478458..17478472, +
1.69e-33FFCP PHASE2:Mm9::chr7:17478458..17478472,+#_02252e78ae09d7b38611a6c0c4f280adp@chr7:17478458..17478472, +
4.64e-33FFCP PHASE2:Mm9::chr2:105921082..105921087,+#_cd9e4fe6ce5f78fc7a9c439fedfcd8fdp@chr2:105921082..105921087, +
4.64e-33FFCP PHASE1:Mm9::chr2:105921082..105921087,+#_cd9e4fe6ce5f78fc7a9c439fedfcd8fdp@chr2:105921082..105921087, +

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