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{{CL
{{CL
|id=CL:0002571
|alt_id=
|name=hepatic mesenchymal stem cell
|namespace=cell
|def="A mesenchymal stem cell of liver." [GOC:tfm]
|xref=
|is_a=CL:0000134;;CL:0002195
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-01T09:58:51Z
|def="A mesenchymal stem cell of liver." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002571
|is_a=CL:0000134 ;;CL:0002195
|is_obsolete=
|located_in=
|located_in=
|name=hepatic mesenchymal stem cell
|namespace=FANTOM
|obo_creation_date=2011-03-01T09:58:51Z
|part_of=UBERON:0002107
|part_of=UBERON:0002107
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:hepatic mesenchymal stem cell
Namespace:FANTOM
Definition:"A mesenchymal stem cell of liver." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T09:58:51Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell),CL:0002195(hepatic stem cell)
part_of:UBERON:0002107(liver)



Children


derives from:FF:0000098 (human hepatic mesenchymal stem cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002571 (hepatic mesenchymal stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr5:148586717..148586723,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr5:148586717..148586723, +
3.29e-195FFCP PHASE1:Hg19::chr10:91939935..91939941,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr10:91939935..91939941, +
3.29e-195FFCP PHASE1:Hg19::chr5:148586717..148586723,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr5:148586717..148586723, +
3.29e-195FFCP PHASE2:Hg19::chr10:91939935..91939941,+#_238e02bf54d24bc206a3976b2bfaaf36p@chr10:91939935..91939941, +
4.61e-131FFCP PHASE2:Hg19::chr20:35695582..35695602,-#_926b16ea60d232836b2907ae007a8758p@chr20:35695582..35695602, -
4.61e-131FFCP PHASE2:Hg19::chr5:148600871..148600881,-#_926b16ea60d232836b2907ae007a8758p@chr5:148600871..148600881, -
4.61e-131FFCP PHASE1:Hg19::chr20:35695582..35695602,-#_926b16ea60d232836b2907ae007a8758p@chr20:35695582..35695602, -
4.61e-131FFCP PHASE1:Hg19::chr5:148600871..148600881,-#_926b16ea60d232836b2907ae007a8758p@chr5:148600871..148600881, -
1.75e-130FFCP PHASE1:Hg19::chr4:175131715..175131722,+#_dc46449212cb4333327956f508ccbb7fp@chr4:175131715..175131722, +
1.75e-130FFCP PHASE2:Hg19::chr4:175131715..175131722,+#_dc46449212cb4333327956f508ccbb7fp@chr4:175131715..175131722, +
2.56e-98FFCP PHASE1:Hg19::chr14:65105965..65105968,-#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr14:65105965..65105968, -
2.56e-98FFCP PHASE2:Hg19::chr9:94955376..94955381,+#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr9:94955376..94955381, +
2.56e-98FFCP PHASE2:Hg19::chr14:65105965..65105968,-#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr14:65105965..65105968, -
2.56e-98FFCP PHASE1:Hg19::chr9:94955376..94955381,+#_2882e9ef0aa4e9ec4c8fa0dccb967f0ap@chr9:94955376..94955381, +
3.96e-66FFCP PHASE1:Hg19::chr22:25091949..25091962,-#_789fc9f53012c69ebd616e7d604193a4p@chr22:25091949..25091962, -
3.96e-66FFCP PHASE2:Hg19::chr22:25091949..25091962,-#_789fc9f53012c69ebd616e7d604193a4p@chr22:25091949..25091962, -
1.08e-65FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_c58c0bd62446463f7ae38d97c19be530p1@ENST00000435177
1.08e-65FFCP PHASE2:Hg19::chr18:72618246..72618294,-#_c58c0bd62446463f7ae38d97c19be530p@chr18:72618246..72618294, -
1.08e-65FFCP PHASE1:Hg19::chr18:72618246..72618294,-#_c58c0bd62446463f7ae38d97c19be530p@chr18:72618246..72618294, -
1.08e-65FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_c58c0bd62446463f7ae38d97c19be530p1@ENST00000435177
2.02e-57FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_4ab0c037ebed375c658a5ce3922262c6p@chr10:92178805..92178827, +
2.02e-57FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_4ab0c037ebed375c658a5ce3922262c6p@chr10:92178805..92178827, +
1.13e-56FFCP PHASE1:Hg19::chr4:86683248..86683251,+#_14342ea78da5707c039b3bdee5ced4ecp@chr4:86683248..86683251, +
1.13e-56FFCP PHASE2:Hg19::chr4:86683248..86683251,+#_14342ea78da5707c039b3bdee5ced4ecp@chr4:86683248..86683251, +
1.5e-56FFCP PHASE2:Hg19::chr9:112889870..112889881,+#_fce2b552a15047b2327834336d457400p24@AKAP2, p26@PALM2-AKAP2
1.5e-56FFCP PHASE1:Hg19::chr9:112889870..112889881,+#_fce2b552a15047b2327834336d457400p24@AKAP2, p26@PALM2-AKAP2
1.46e-50FFCP PHASE2:Hg19::chr9:12701369..12701379,+#_c4709f6b3d26b75a67c18c0ad9f0325dp29@TYRP1
1.46e-50FFCP PHASE1:Hg19::chr9:12701369..12701379,+#_c4709f6b3d26b75a67c18c0ad9f0325dp29@TYRP1
2.74e-50FFCP PHASE2:Hg19::chr2:55831402..55831405,-#_59be82174d64ea56eb1a1b1e533a334bp19@SMEK2
2.74e-50FFCP PHASE1:Hg19::chr2:55831402..55831405,-#_59be82174d64ea56eb1a1b1e533a334bp19@SMEK2
5.15e-50FFCP PHASE2:Hg19::chr4:175135724..175135735,-#_34f634a981ae51a69536ed1baa019bc0p@chr4:175135724..175135735, -
5.15e-50FFCP PHASE1:Hg19::chr4:175135724..175135735,-#_34f634a981ae51a69536ed1baa019bc0p@chr4:175135724..175135735, -
1.09e-49FFCP PHASE2:Hg19::chr18:77558264..77558310,+#_e20be8d5998a2521c467bce6ef1211f2p@chr18:77558264..77558310, +
1.09e-49FFCP PHASE1:Hg19::chr2:216995311..216995323,+#_e20be8d5998a2521c467bce6ef1211f2p27@XRCC5
1.09e-49FFCP PHASE1:Hg19::chr18:77558264..77558310,+#_e20be8d5998a2521c467bce6ef1211f2p@chr18:77558264..77558310, +
1.09e-49FFCP PHASE2:Hg19::chr2:216995311..216995323,+#_e20be8d5998a2521c467bce6ef1211f2p27@XRCC5
4.0e-45FFCP PHASE1:Hg19::chr15:56208964..56208977,-#_0af6adfc5749057cb18b36c16be7c3a2p11@NEDD4
4.0e-45FFCP PHASE2:Hg19::chr15:56208964..56208977,-#_0af6adfc5749057cb18b36c16be7c3a2p11@NEDD4
7.83e-45FFCP PHASE1:Hg19::chr1:235123146..235123150,-#_f262262ab5fdfdfe2e7f4dd2fe55d038p@chr1:235123146..235123150, -
7.83e-45FFCP PHASE2:Hg19::chr1:235123146..235123150,-#_f262262ab5fdfdfe2e7f4dd2fe55d038p@chr1:235123146..235123150, -
3.99e-41FFCP PHASE1:Hg19::chr20:35695476..35695506,-#_e5bf37a7783d3ee7207cbae18fb83163p@chr20:35695476..35695506, -
3.99e-41FFCP PHASE2:Hg19::chr20:35695476..35695506,-#_e5bf37a7783d3ee7207cbae18fb83163p@chr20:35695476..35695506, -
5.99e-41FFCP PHASE1:Hg19::chr4:175131785..175131801,+#_948bf61c6527f896d3f97fb2f660b61dp@chr4:175131785..175131801, +
5.99e-41FFCP PHASE2:Hg19::chr4:175131785..175131801,+#_948bf61c6527f896d3f97fb2f660b61dp@chr4:175131785..175131801, +
6.7e-40FFCP PHASE2:Hg19::chr11:9588526..9588534,+#_62c2a070d097acecb0c8e903193794ecp@chr11:9588526..9588534, +
6.7e-40FFCP PHASE1:Hg19::chr11:9588526..9588534,+#_62c2a070d097acecb0c8e903193794ecp@chr11:9588526..9588534, +
9.99e-40FFCP PHASE1:Hg19::chr4:174440289..174440300,-#_14926fd74679da20fe7c3b22499822f6p@chr4:174440289..174440300, -
9.99e-40FFCP PHASE2:Hg19::chr4:174440289..174440300,-#_14926fd74679da20fe7c3b22499822f6p@chr4:174440289..174440300, -
1.57e-37FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_2a683b3bf27b9b8889720dbee5f2e08dp@chr7:136759435..136759447, +
1.57e-37FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_2a683b3bf27b9b8889720dbee5f2e08dp@chr7:136759435..136759447, +
9.84e-37FFCP PHASE1:Hg19::chr9:12701351..12701368,+#_6f11d956714f11c1a3e6e171177557c1p21@TYRP1
9.84e-37FFCP PHASE2:Hg19::chr9:12701351..12701368,+#_6f11d956714f11c1a3e6e171177557c1p21@TYRP1
1.18e-36FFCP PHASE2:Hg19::chr20:44410265..44410286,-#_47c144ebabe1df1f9eb1af46c1ccab1cp@chr20:44410265..44410286, -
1.18e-36FFCP PHASE1:Hg19::chr20:44410265..44410286,-#_47c144ebabe1df1f9eb1af46c1ccab1cp@chr20:44410265..44410286, -
2.45e-36FFCP PHASE1:Hg19::chr1:109935515..109935518,-#_051e3b983882824a7ea4274ab5138ba4p@chr1:109935515..109935518, -
2.45e-36FFCP PHASE2:Hg19::chr1:109935515..109935518,-#_051e3b983882824a7ea4274ab5138ba4p@chr1:109935515..109935518, -
1.11e-34FFCP PHASE1:Hg19::chr10:92173191..92173202,+#_87f4dbdec69ae53223af6bb6026019bep@chr10:92173191..92173202, +
1.11e-34FFCP PHASE2:Hg19::chr10:92173191..92173202,+#_87f4dbdec69ae53223af6bb6026019bep@chr10:92173191..92173202, +
7.05e-34FFCP PHASE2:Hg19::chr16:89686480..89686486,+#_a8004727e0d9a4b738472e064b38922bp@chr16:89686480..89686486, +
7.05e-34FFCP PHASE2:Hg19::chr13:37420608..37420609,-#_a8004727e0d9a4b738472e064b38922bp@chr13:37420608..37420609, -
7.05e-34FFCP PHASE1:Hg19::chrX:47509466..47509475,-#_a8004727e0d9a4b738472e064b38922bp@chrX:47509466..47509475, -
7.05e-34FFCP PHASE2:Hg19::chr4:174460524..174460526,+#_a8004727e0d9a4b738472e064b38922bp2@NBLA00301
7.05e-34FFCP PHASE1:Hg19::chr16:89686480..89686486,+#_a8004727e0d9a4b738472e064b38922bp@chr16:89686480..89686486, +
7.05e-34FFCP PHASE2:Hg19::chrX:47509466..47509475,-#_a8004727e0d9a4b738472e064b38922bp@chrX:47509466..47509475, -
7.05e-34FFCP PHASE1:Hg19::chr13:37420608..37420609,-#_a8004727e0d9a4b738472e064b38922bp@chr13:37420608..37420609, -
7.05e-34FFCP PHASE1:Hg19::chr4:174460524..174460526,+#_a8004727e0d9a4b738472e064b38922bp2@NBLA00301
8.39e-34FFCP PHASE2:Hg19::chr2:38148042..38148060,+#_bc768dc3847dda896c1771088da675b6p@chr2:38148042..38148060, +
8.39e-34FFCP PHASE1:Hg19::chr2:38148042..38148060,+#_bc768dc3847dda896c1771088da675b6p@chr2:38148042..38148060, +
1.17e-33FFCP PHASE1:Hg19::chrX:107681458..107681465,-#_efe7f525dac10ae73f90f58a0f414c76p7@COL4A6
1.17e-33FFCP PHASE2:Hg19::chrX:107681458..107681465,-#_efe7f525dac10ae73f90f58a0f414c76p7@COL4A6
1.64e-33FFCP PHASE2:Hg19::chr12:105258734..105258750,+#_8ade20a76713b3a592b5fceb9fb94336p@chr12:105258734..105258750, +
1.64e-33FFCP PHASE1:Hg19::chr12:105258734..105258750,+#_8ade20a76713b3a592b5fceb9fb94336p@chr12:105258734..105258750, +
1.93e-33FFCP PHASE2:Hg19::chr9:12701203..12701216,+#_71ece31a484b22a8069101d9b60a82cfp18@TYRP1
1.93e-33FFCP PHASE1:Hg19::chr9:12701203..12701216,+#_71ece31a484b22a8069101d9b60a82cfp18@TYRP1
5.37e-32FFCP PHASE2:Hg19::chr2:188415649..188415664,-#_bcc772d1dd475dada70d2cd7e21ff3dap@chr2:188415649..188415664, -
5.37e-32FFCP PHASE1:Hg19::chr2:188415649..188415664,-#_bcc772d1dd475dada70d2cd7e21ff3dap@chr2:188415649..188415664, -
1.17e-31FFCP PHASE1:Hg19::chr2:102720962..102720971,+#_8f547d4bc80df1f24a67499de4dbe25dp27@IL1R1
1.17e-31FFCP PHASE2:Hg19::chr2:102720962..102720971,+#_8f547d4bc80df1f24a67499de4dbe25dp27@IL1R1
1.37e-31FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_3a510958cbd46683551edd6826125d89p@chr13:94958134..94958164, +
1.37e-31FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_3a510958cbd46683551edd6826125d89p@chr13:94958134..94958164, +
4.04e-31FFCP PHASE2:Hg19::chrX:119254455..119254468,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p1@ENST00000555831, p1@ENST00000557073
4.04e-31FFCP PHASE1:Hg19::chrX:47373179..47373190,-#_f6a0d96ecbb46e8ece0b9108c9cd12b6p2@NUS1P1
4.04e-31FFCP PHASE1:Hg19::chr16:89687026..89687041,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p7@DPEP1
4.04e-31FFCP PHASE2:Hg19::chrX:47373179..47373190,-#_f6a0d96ecbb46e8ece0b9108c9cd12b6p2@NUS1P1
4.04e-31FFCP PHASE2:Hg19::chr16:89687026..89687041,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p7@DPEP1
4.04e-31FFCP PHASE1:Hg19::chrX:119254455..119254468,+#_f6a0d96ecbb46e8ece0b9108c9cd12b6p1@ENST00000555831, p1@ENST00000557073
5.5e-31FFCP PHASE1:Hg19::chr14:52508902..52508921,-#_74ddcdd68d40305d2369d46437457330p5@NID2
5.5e-31FFCP PHASE2:Hg19::chr14:52508902..52508921,-#_74ddcdd68d40305d2369d46437457330p5@NID2
4.49e-30FFCP PHASE1:Hg19::chr17:6658878..6658889,+#_a688b302f5e39e3383b523719905c1e6p9@XAF1
4.49e-30FFCP PHASE2:Hg19::chr17:6658878..6658889,+#_a688b302f5e39e3383b523719905c1e6p9@XAF1
1.08e-29FFCP PHASE1:Hg19::chr5:121490583..121490596,-#_272a8c34a3e19c9934a76f0e24237957p1@ENST00000504829
1.08e-29FFCP PHASE2:Hg19::chr5:121490583..121490596,-#_272a8c34a3e19c9934a76f0e24237957p1@ENST00000504829
9.3e-29FFCP PHASE1:Hg19::chr2:121480592..121480601,+#_c80bd159da2fc1f08471233a78ac81b8p@chr2:121480592..121480601, +
9.3e-29FFCP PHASE2:Hg19::chr2:121480592..121480601,+#_c80bd159da2fc1f08471233a78ac81b8p@chr2:121480592..121480601, +
4.13e-28FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_b5aef320e17613174790ae4d883acbc4p5@NR1H4
4.13e-28FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_b5aef320e17613174790ae4d883acbc4p5@NR1H4
2.09e-27FFCP PHASE2:Hg19::chr10:102122643..102122654,+#_8d48cb7fecf05340414dbcc073b1a58ap@chr10:102122643..102122654, +
2.09e-27FFCP PHASE1:Hg19::chr10:102122643..102122654,+#_8d48cb7fecf05340414dbcc073b1a58ap@chr10:102122643..102122654, +
7.96e-27FFCP PHASE2:Hg19::chr12:10331605..10331616,+#_f28d92d0d150b2dd442a8b8c94bc4a7cp5@C12orf59
7.96e-27FFCP PHASE1:Hg19::chr12:10331605..10331616,+#_f28d92d0d150b2dd442a8b8c94bc4a7cp5@C12orf59

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