Personal tools

CL:1000600: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000600
|alt_id=
|name=lower urinary tract cell
|namespace=cell
|def=
|xref=KUPO:0001115
|is_a=CL:0000548
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000600
|is_a=CL:0000548
|is_obsolete=
|located_in=
|located_in=
|name=lower urinary tract cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001556
|part_of=UBERON:0001556
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=KUPO:0001115
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:lower urinary tract cell
Namespace:FANTOM
Xrefs:
links:
KUPO:0001115


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000548(animal cell)
part_of:UBERON:0001556(lower urinary tract)



Children


is a:CL:1001319 (bladder cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000600 (lower urinary tract cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_128616f5e8a6bdaf0636a433cab16b83p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_128616f5e8a6bdaf0636a433cab16b83p2@ENST00000427341
5.42e-195FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_128616f5e8a6bdaf0636a433cab16b83p@chr15:101282110..101282113, +
5.42e-195FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_128616f5e8a6bdaf0636a433cab16b83p2@ENST00000427341
9.37e-99FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_293b098470ab54ce046fafc6a8fe4708p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_293b098470ab54ce046fafc6a8fe4708p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_293b098470ab54ce046fafc6a8fe4708p@chr6:21588091..21588098, -
9.37e-99FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_293b098470ab54ce046fafc6a8fe4708p@chr21:39627877..39627884, +
9.37e-99FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_293b098470ab54ce046fafc6a8fe4708p@chr3:13992334..13992338, -
9.37e-99FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_293b098470ab54ce046fafc6a8fe4708p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_293b098470ab54ce046fafc6a8fe4708p26@LINC00340
9.37e-99FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_293b098470ab54ce046fafc6a8fe4708p@chr6:21664489..21664494, +
9.37e-99FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_293b098470ab54ce046fafc6a8fe4708p26@LINC00340
9.37e-99FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_293b098470ab54ce046fafc6a8fe4708p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_293b098470ab54ce046fafc6a8fe4708p@chr6:21383702..21383704, +
9.37e-99FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_293b098470ab54ce046fafc6a8fe4708p@chr21:39627877..39627884, +
2.55e-98FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_9e8d14a3415283b0642a312b91bcf16fp@chr6:21876977..21876981, +
2.55e-98FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_9e8d14a3415283b0642a312b91bcf16fp@chr6:21876977..21876981, +
2.55e-98FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_9e8d14a3415283b0642a312b91bcf16fp@chr1:233430709..233430711, +
2.55e-98FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_9e8d14a3415283b0642a312b91bcf16fp@chr1:233430709..233430711, +
1.23e-66FFCP PHASE2:Hg19::chr6:21664412..21664419,+#_13416923be51f049b7fcf22b05270cc4p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE2:Hg19::chr13:96459990..96459992,+#_13416923be51f049b7fcf22b05270cc4p@chr13:96459990..96459992, +
1.23e-66FFCP PHASE1:Hg19::chr6:21664412..21664419,+#_13416923be51f049b7fcf22b05270cc4p@chr6:21664412..21664419, +
1.23e-66FFCP PHASE1:Hg19::chr13:96459990..96459992,+#_13416923be51f049b7fcf22b05270cc4p@chr13:96459990..96459992, +
2.39e-66FFCP PHASE1:Hg19::chr11:69867053..69867065,-#_55f1276d0fe4ce57379b8a19c7b1a86fp2@ENST00000528507
2.39e-66FFCP PHASE2:Hg19::chr15:79296342..79296353,-#_55f1276d0fe4ce57379b8a19c7b1a86fp@chr15:79296342..79296353, -
2.39e-66FFCP PHASE1:Hg19::chr6:20534754..20534756,-#_55f1276d0fe4ce57379b8a19c7b1a86fp@chr6:20534754..20534756, -
2.39e-66FFCP PHASE1:Hg19::chr15:79296342..79296353,-#_55f1276d0fe4ce57379b8a19c7b1a86fp@chr15:79296342..79296353, -
2.39e-66FFCP PHASE2:Hg19::chr2:176971270..176971277,-#_55f1276d0fe4ce57379b8a19c7b1a86fp@chr2:176971270..176971277, -
2.39e-66FFCP PHASE2:Hg19::chr6:20534754..20534756,-#_55f1276d0fe4ce57379b8a19c7b1a86fp@chr6:20534754..20534756, -
2.39e-66FFCP PHASE1:Hg19::chr2:176971270..176971277,-#_55f1276d0fe4ce57379b8a19c7b1a86fp@chr2:176971270..176971277, -
2.39e-66FFCP PHASE2:Hg19::chr11:69867053..69867065,-#_55f1276d0fe4ce57379b8a19c7b1a86fp2@ENST00000528507
4.66e-66FFCP PHASE1:Hg19::chr15:40544787..40544798,+#_eca0c03bad001c8a39ffb9dc0d21512bp23@PAK6
4.66e-66FFCP PHASE2:Hg19::chr11:92613787..92613796,+#_eca0c03bad001c8a39ffb9dc0d21512bp@chr11:92613787..92613796, +
4.66e-66FFCP PHASE1:Hg19::chr11:92613787..92613796,+#_eca0c03bad001c8a39ffb9dc0d21512bp@chr11:92613787..92613796, +
4.66e-66FFCP PHASE2:Hg19::chr14:80855894..80855900,+#_eca0c03bad001c8a39ffb9dc0d21512bp@chr14:80855894..80855900, +
4.66e-66FFCP PHASE1:Hg19::chr14:80855894..80855900,+#_eca0c03bad001c8a39ffb9dc0d21512bp@chr14:80855894..80855900, +
4.66e-66FFCP PHASE2:Hg19::chr15:40544787..40544798,+#_eca0c03bad001c8a39ffb9dc0d21512bp23@PAK6
1.46e-50FFCP PHASE1:Hg19::chr6:21665113..21665128,-#_fb9c8de47223357ee3b9a28a6e19f720p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE2:Hg19::chr6:21665113..21665128,-#_fb9c8de47223357ee3b9a28a6e19f720p@chr6:21665113..21665128, -
1.46e-50FFCP PHASE1:Hg19::chr6:21665769..21665780,+#_fb9c8de47223357ee3b9a28a6e19f720p@chr6:21665769..21665780, +
1.46e-50FFCP PHASE2:Hg19::chr6:21665769..21665780,+#_fb9c8de47223357ee3b9a28a6e19f720p@chr6:21665769..21665780, +
1.46e-50FFCP PHASE1:Hg19::chr6:21022855..21022892,+#_fb9c8de47223357ee3b9a28a6e19f720p@chr6:21022855..21022892, +
1.46e-50FFCP PHASE2:Hg19::chr6:21022855..21022892,+#_fb9c8de47223357ee3b9a28a6e19f720p@chr6:21022855..21022892, +
3.99e-50FFCP PHASE2:Hg19::chr17:4699695..4699699,-#_d7a8c050d25a83cd05ed8e9a5af1572ap@chr17:4699695..4699699, -
3.99e-50FFCP PHASE1:Hg19::chr17:4699695..4699699,-#_d7a8c050d25a83cd05ed8e9a5af1572ap@chr17:4699695..4699699, -
9.91e-41FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_a51b775c65a43b71df89a00143e12bbcp@chr10:30046722..30046725, -
9.91e-41FFCP PHASE2:Hg19::chr5:57555322..57555334,-#_a51b775c65a43b71df89a00143e12bbcp@chr5:57555322..57555334, -
9.91e-41FFCP PHASE1:Hg19::chr6:22221030..22221034,+#_a51b775c65a43b71df89a00143e12bbcp1@AL117559
9.91e-41FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_a51b775c65a43b71df89a00143e12bbcp@chr10:30046722..30046725, -
9.91e-41FFCP PHASE2:Hg19::chr6:22221030..22221034,+#_a51b775c65a43b71df89a00143e12bbcp1@AL117559
9.91e-41FFCP PHASE1:Hg19::chr5:57555322..57555334,-#_a51b775c65a43b71df89a00143e12bbcp@chr5:57555322..57555334, -
1.48e-40FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_6f7cbe1e42cc3aee638bafadcacfe90bp@chr17:2264983..2264992, +
1.48e-40FFCP PHASE2:Hg19::chr10:30151938..30151956,-#_6f7cbe1e42cc3aee638bafadcacfe90bp@chr10:30151938..30151956, -
1.48e-40FFCP PHASE1:Hg19::chr10:30151938..30151956,-#_6f7cbe1e42cc3aee638bafadcacfe90bp@chr10:30151938..30151956, -
1.48e-40FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_6f7cbe1e42cc3aee638bafadcacfe90bp@chr17:2264983..2264992, +
3.3e-40FFCP PHASE2:Hg19::chr19:48102065..48102072,+#_ae3b2b06385be87e015bfe9917efd317p@chr19:48102065..48102072, +
3.3e-40FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_ae3b2b06385be87e015bfe9917efd317p8@ALDH1A3
3.3e-40FFCP PHASE1:Hg19::chr19:48102065..48102072,+#_ae3b2b06385be87e015bfe9917efd317p@chr19:48102065..48102072, +
3.3e-40FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_ae3b2b06385be87e015bfe9917efd317p8@ALDH1A3
1.84e-34FFCP PHASE1:Hg19::chr6:21680979..21680984,+#_e504f42de947c93e222dd52906387553p@chr6:21680979..21680984, +
1.84e-34FFCP PHASE2:Hg19::chr6:21680979..21680984,+#_e504f42de947c93e222dd52906387553p@chr6:21680979..21680984, +
2.58e-34FFCP PHASE1:Hg19::chr4:183752843..183752848,+#_1435184b35f64f901853b088b815dbadp@chr4:183752843..183752848, +
2.58e-34FFCP PHASE1:Hg19::chr6:21070033..21070038,+#_1435184b35f64f901853b088b815dbadp@chr6:21070033..21070038, +
2.58e-34FFCP PHASE2:Hg19::chr6:21070033..21070038,+#_1435184b35f64f901853b088b815dbadp@chr6:21070033..21070038, +
2.58e-34FFCP PHASE2:Hg19::chr2:177042702..177042725,-#_1435184b35f64f901853b088b815dbadp2@uc002uku.2
2.58e-34FFCP PHASE2:Hg19::chr4:183752843..183752848,+#_1435184b35f64f901853b088b815dbadp@chr4:183752843..183752848, +
2.58e-34FFCP PHASE1:Hg19::chr2:177042702..177042725,-#_1435184b35f64f901853b088b815dbadp2@uc002uku.2
3.61e-34FFCP PHASE1:Hg19::chr6:22047883..22047886,+#_4721123df0256db0ef0280ef91e1b1d4p@chr6:22047883..22047886, +
3.61e-34FFCP PHASE2:Hg19::chr6:22047883..22047886,+#_4721123df0256db0ef0280ef91e1b1d4p@chr6:22047883..22047886, +
5.05e-34FFCP PHASE2:Hg19::chr19:34618510..34618515,-#_16d2b8365dde9e832eefd9eeb8b7629ep@chr19:34618510..34618515, -
5.05e-34FFCP PHASE1:Hg19::chr19:34618510..34618515,-#_16d2b8365dde9e832eefd9eeb8b7629ep@chr19:34618510..34618515, -
7.48e-30FFCP PHASE2:Hg19::chr5:54179495..54179507,+#_fedad4981de9f250048ba03781d5b95cp@chr5:54179495..54179507, +
7.48e-30FFCP PHASE1:Hg19::chr5:54179495..54179507,+#_fedad4981de9f250048ba03781d5b95cp@chr5:54179495..54179507, +
7.48e-30FFCP PHASE1:Hg19::chr6:20402608..20402629,+#_fedad4981de9f250048ba03781d5b95cp13@E2F3
7.48e-30FFCP PHASE2:Hg19::chr1:52629146..52629156,-#_fedad4981de9f250048ba03781d5b95cp1@ENST00000412785
7.48e-30FFCP PHASE2:Hg19::chr6:20402608..20402629,+#_fedad4981de9f250048ba03781d5b95cp13@E2F3
7.48e-30FFCP PHASE1:Hg19::chr6:21665095..21665110,-#_fedad4981de9f250048ba03781d5b95cp@chr6:21665095..21665110, -
7.48e-30FFCP PHASE1:Hg19::chr1:52629146..52629156,-#_fedad4981de9f250048ba03781d5b95cp1@ENST00000412785
7.48e-30FFCP PHASE2:Hg19::chr6:21665095..21665110,-#_fedad4981de9f250048ba03781d5b95cp@chr6:21665095..21665110, -
2.37e-29FFCP PHASE1:Hg19::chr2:109605543..109605554,-#_6d5bd3f012b7bcc7a23da0ac11081c94p4@EDAR
2.37e-29FFCP PHASE1:Hg19::chr6:161454984..161455010,+#_6d5bd3f012b7bcc7a23da0ac11081c94p14@MAP3K4
2.37e-29FFCP PHASE2:Hg19::chr6:161454984..161455010,+#_6d5bd3f012b7bcc7a23da0ac11081c94p14@MAP3K4
2.37e-29FFCP PHASE2:Hg19::chr2:109605543..109605554,-#_6d5bd3f012b7bcc7a23da0ac11081c94p4@EDAR
4.2e-29FFCP PHASE1:Hg19::chrX:104100378..104100381,+#_1b0f041016d35d33238382c019bd228dp@chrX:104100378..104100381, +
4.2e-29FFCP PHASE2:Hg19::chrX:104100378..104100381,+#_1b0f041016d35d33238382c019bd228dp@chrX:104100378..104100381, +
2.78e-26FFCP PHASE1:Hg19::chr6:21933119..21933123,+#_beedf0e847eda19f8b6c619fd66ceeb6p@chr6:21933119..21933123, +
2.78e-26FFCP PHASE2:Hg19::chr6:21933119..21933123,+#_beedf0e847eda19f8b6c619fd66ceeb6p@chr6:21933119..21933123, +
2.78e-26FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_beedf0e847eda19f8b6c619fd66ceeb6p4@LINC00460
2.78e-26FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_beedf0e847eda19f8b6c619fd66ceeb6p4@LINC00460
3.58e-26FFCP PHASE2:Hg19::chr3:104180688..104180692,+#_476189fba62e59dcaf681cea1d93d0fep@chr3:104180688..104180692, +
3.58e-26FFCP PHASE1:Hg19::chr3:104180688..104180692,+#_476189fba62e59dcaf681cea1d93d0fep@chr3:104180688..104180692, +
4.61e-26FFCP PHASE1:Hg19::chr15:101418003..101418019,+#_98496ca18d24edccbc5206fb907a84dcp5@ALDH1A3
4.61e-26FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_98496ca18d24edccbc5206fb907a84dcp@chr7:121156367..121156370, -
4.61e-26FFCP PHASE2:Hg19::chr1:12239065..12239070,-#_98496ca18d24edccbc5206fb907a84dcp@chr1:12239065..12239070, -
4.61e-26FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_98496ca18d24edccbc5206fb907a84dcp@chr7:121156367..121156370, -
4.61e-26FFCP PHASE1:Hg19::chr9:93960724..93960730,+#_98496ca18d24edccbc5206fb907a84dcp@chr9:93960724..93960730, +
4.61e-26FFCP PHASE2:Hg19::chr9:93960724..93960730,+#_98496ca18d24edccbc5206fb907a84dcp@chr9:93960724..93960730, +
4.61e-26FFCP PHASE1:Hg19::chr1:12239065..12239070,-#_98496ca18d24edccbc5206fb907a84dcp@chr1:12239065..12239070, -
4.61e-26FFCP PHASE2:Hg19::chr15:101418003..101418019,+#_98496ca18d24edccbc5206fb907a84dcp5@ALDH1A3

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000600&oldid=3275587"