Personal tools

UBERON:0001242: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001242
|alt_id=UBERON:FMA_15695-MA_0001537
|name=intestinal mucosa
|namespace=
|def="The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369]
|xref=BTO:0000642;;FMA:15695;;GAID:296;;MA:0001537;;MESH:A.03.492.411.369;;ncithesaurus:Intestinal_Mucosa;;SCTID:362080002
|is_a=UBERON:0004786
|synonym="bowel mucosa" EXACT [OBOL:automatic];;"bowel mucosa of organ" EXACT [OBOL:automatic];;"bowel mucous membrane" EXACT [OBOL:automatic];;"bowel organ mucosa" EXACT [OBOL:automatic];;"intestine mucosa" EXACT [];;"intestine mucosa of organ" EXACT [OBOL:automatic];;"intestine mucous membrane" EXACT [OBOL:automatic];;"intestine organ mucosa" EXACT [OBOL:automatic];;"mucosa of bowel" EXACT [OBOL:automatic];;"mucosa of intestine" EXACT [];;"mucosa of organ of bowel" EXACT [OBOL:automatic];;"mucosa of organ of intestine" EXACT [OBOL:automatic];;"mucous membrane of bowel" EXACT [OBOL:automatic];;"mucous membrane of intestine" EXACT [OBOL:automatic];;"organ mucosa of bowel" EXACT [OBOL:automatic];;"organ mucosa of intestine" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=UBERON:FMA_15695-MA_0001537
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001242
|is_a=UBERON:0004786
|is_obsolete=
|located_in=
|located_in=
|name=intestinal mucosa
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000160;;UBERON:0001262
|part_of=UBERON:0000160;;UBERON:0001262
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="bowel mucosa" EXACT [OBOL:automatic];;"bowel mucosa of organ" EXACT [OBOL:automatic];;"bowel mucous membrane" EXACT [OBOL:automatic];;"bowel organ mucosa" EXACT [OBOL:automatic];;"intestine mucosa" EXACT [];;"intestine mucosa of organ" EXACT [OBOL:automatic];;"intestine mucous membrane" EXACT [OBOL:automatic];;"intestine organ mucosa" EXACT [OBOL:automatic];;"mucosa of bowel" EXACT [OBOL:automatic];;"mucosa of intestine" EXACT [];;"mucosa of organ of bowel" EXACT [OBOL:automatic];;"mucosa of organ of intestine" EXACT [OBOL:automatic];;"mucous membrane of bowel" EXACT [OBOL:automatic];;"mucous membrane of intestine" EXACT [OBOL:automatic];;"organ mucosa of bowel" EXACT [OBOL:automatic];;"organ mucosa of intestine" EXACT [OBOL:automatic]
|union_of=
|xref=BTO:0000642;;FMA:15695;;GAID:296;;MA:0001537;;MESH:A.03.492.411.369;;ncithesaurus:Intestinal_Mucosa;;SCTID:362080002
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:intestinal mucosa
Namespace:FANTOM
Definition:"The innermost membrane of the four coats of the intestinal wall, the other three being the submucosa, muscular layers, and serosa. (Berk et al., Gastroenterology, 4th ed, v.3, p1479)" [MESH:A.03.492.411.369]
Xrefs:
links:

BTO:0000642
FMA:15695
GAID:296
MA:0001537
MESH:A.03.492.411.369
ncithesaurus:Intestinal_Mucosa

SCTID:362080002
Synonyms: "bowel mucosa" EXACT [OBOL:automatic]
"bowel mucosa of organ" EXACT [OBOL:automatic]
"bowel mucous membrane" EXACT [OBOL:automatic]
"bowel organ mucosa" EXACT [OBOL:automatic]
"intestine mucosa" EXACT []
"intestine mucosa of organ" EXACT [OBOL:automatic]
"intestine mucous membrane" EXACT [OBOL:automatic]
"intestine organ mucosa" EXACT [OBOL:automatic]
"mucosa of bowel" EXACT [OBOL:automatic]
"mucosa of intestine" EXACT []
"mucosa of organ of bowel" EXACT [OBOL:automatic]
"mucosa of organ of intestine" EXACT [OBOL:automatic]
"mucous membrane of bowel" EXACT [OBOL:automatic]
"mucous membrane of intestine" EXACT [OBOL:automatic]
"organ mucosa of bowel" EXACT [OBOL:automatic]
"organ mucosa of intestine" EXACT [OBOL:automatic]
Alt_id: UBERON:FMA_15695-MA_0001537
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004786(gastrointestinal system mucosa)
part_of:UBERON:0000160(intestine),UBERON:0001262(wall of intestine)



Children

is a:UBERON:0001204 (mucosa of small intestine)
derives from:FF:0011436 (mouse intestinal mucosa- adult sample)
part of:UBERON:0000333 (intestinal gland),UBERON:0001204 (mucosa of small intestine),UBERON:0001277 (intestinal epithelium),UBERON:0001983 (crypt of Lieberkuhn)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001242 (intestinal mucosa), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_1a78842ff5e07c158c2f734d85401345p@chr9:35801527..35801540, +
1.55e-98FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_1a78842ff5e07c158c2f734d85401345p@chr9:35801527..35801540, +
2.4e-66FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_437179a44f9874ffa2b27f327d38dad5p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_437179a44f9874ffa2b27f327d38dad5p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_437179a44f9874ffa2b27f327d38dad5p1@ENST00000429014
2.4e-66FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_437179a44f9874ffa2b27f327d38dad5p@chr18:7034928..7034943, -
2.4e-66FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_437179a44f9874ffa2b27f327d38dad5p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_437179a44f9874ffa2b27f327d38dad5p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_437179a44f9874ffa2b27f327d38dad5p@chr9:129830560..129830568, +
2.4e-66FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_437179a44f9874ffa2b27f327d38dad5p1@ENST00000429014
2.4e-66FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_437179a44f9874ffa2b27f327d38dad5p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_437179a44f9874ffa2b27f327d38dad5p1@CYMP
2.4e-66FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_437179a44f9874ffa2b27f327d38dad5p@chr6:22919616..22919625, -
2.4e-66FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_437179a44f9874ffa2b27f327d38dad5p@chr2:127873614..127873626, +
2.4e-66FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_437179a44f9874ffa2b27f327d38dad5p@chr13:46093155..46093164, +
2.4e-66FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_437179a44f9874ffa2b27f327d38dad5p@chr18:7034928..7034943, -
3.35e-66FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_af606c5fbc3049df7636e3131ac612f2p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_af606c5fbc3049df7636e3131ac612f2p16@ACOT7
3.35e-66FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_af606c5fbc3049df7636e3131ac612f2p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_af606c5fbc3049df7636e3131ac612f2p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_af606c5fbc3049df7636e3131ac612f2p@chrX:21849506..21849512, -
3.35e-66FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_af606c5fbc3049df7636e3131ac612f2p@chr2:205409703..205409714, +
3.35e-66FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_af606c5fbc3049df7636e3131ac612f2p@chr20:17691468..17691474, -
3.35e-66FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_af606c5fbc3049df7636e3131ac612f2p16@ACOT7
4.67e-66FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_08e041465bafdae357a0159bcc8d5f96p@chr9:138591077..138591111, -
4.67e-66FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_08e041465bafdae357a0159bcc8d5f96p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_08e041465bafdae357a0159bcc8d5f96p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_08e041465bafdae357a0159bcc8d5f96p@chr11:89925073..89925074, +
4.67e-66FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_08e041465bafdae357a0159bcc8d5f96p@chr2:28340361..28340371, +
4.67e-66FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_08e041465bafdae357a0159bcc8d5f96p@chr9:138591077..138591111, -
3.83e-60FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_ad4c50c5c8832a535da41b2ceb37182dp@chr16:30055801..30055806, +
3.83e-60FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_ad4c50c5c8832a535da41b2ceb37182dp@chr16:30055801..30055806, +
3.16e-55FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_01a00cbea33bfa3c729ec43181372185p@chr3:122215917..122215967, -
3.16e-55FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_01a00cbea33bfa3c729ec43181372185p@chr3:122215917..122215967, -
1.47e-53FFCP PHASE2:Mm9::chr18:75457242..75457248,+#_dc35a3a1796f146b3323289db3134de9p@chr18:75457242..75457248, +
1.47e-53FFCP PHASE1:Mm9::chr18:75457242..75457248,+#_dc35a3a1796f146b3323289db3134de9p@chr18:75457242..75457248, +
1.5e-53FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_c3075341fa6130f6c3a61f46b4f18dcep@chr5:135442349..135442362, -
1.5e-53FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_c3075341fa6130f6c3a61f46b4f18dcep@chr5:135442349..135442362, -
1.94e-53FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_9f38342e1e62a2ed764e8d400190b587p@chr8:122335239..122335244, +
1.94e-53FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_9f38342e1e62a2ed764e8d400190b587p@chr8:122335239..122335244, +
7.2e-52FFCP PHASE1:Mm9::chr18:61795043..61795050,-#_03f3170fd37321c51836c5510533691dp@chr18:61795043..61795050, -
7.2e-52FFCP PHASE2:Mm9::chr18:61795043..61795050,-#_03f3170fd37321c51836c5510533691dp@chr18:61795043..61795050, -
1.66e-51FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_21434ea07047025999aec659213aa0d4p4@Leng9
1.66e-51FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_21434ea07047025999aec659213aa0d4p4@Leng9
3.1e-50FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:128419359..128419367, -
3.1e-50FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:55404829..55404833, -
3.1e-50FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:78621016..78621042, +
3.1e-50FFCP PHASE2:Hg19::chr15:60749901..60749904,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr15:60749901..60749904, -
3.1e-50FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr2:66794389..66794398, +
3.1e-50FFCP PHASE2:Hg19::chr16:55344418..55344442,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr16:55344418..55344442, +
3.1e-50FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr7:97958802..97958804, -
3.1e-50FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:198324742..198324745, +
3.1e-50FFCP PHASE2:Hg19::chr4:157174062..157174071,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr4:157174062..157174071, +
3.1e-50FFCP PHASE2:Hg19::chr13:28541425..28541439,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr13:28541425..28541439, -
3.1e-50FFCP PHASE1:Hg19::chr2:43616324..43616335,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr2:43616324..43616335, -
3.1e-50FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr16:19661585..19661596, +
3.1e-50FFCP PHASE2:Hg19::chr7:89797154..89797172,+#_bb3440edd530cc3abd32f3c66fe0424cp9@STEAP2
3.1e-50FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr3:140054665..140054678, -
3.1e-50FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr12:65466889..65466894, -
3.1e-50FFCP PHASE2:Hg19::chr1:19522690..19522704,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:19522690..19522704, -
3.1e-50FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr6:8389389..8389429, -
3.1e-50FFCP PHASE1:Hg19::chr10:24726466..24726472,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr10:24726466..24726472, +
3.1e-50FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:128259602..128259609, -
3.1e-50FFCP PHASE2:Hg19::chr7:138064518..138064531,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr7:138064518..138064531, -
3.1e-50FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:127817393..127817400, +
3.1e-50FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr6:5491056..5491061, +
3.1e-50FFCP PHASE2:Hg19::chr1:163338283..163338286,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:163338283..163338286, +
3.1e-50FFCP PHASE2:Hg19::chr13:99661014..99661016,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr13:99661014..99661016, -
3.1e-50FFCP PHASE1:Hg19::chrX:42162203..42162241,+#_bb3440edd530cc3abd32f3c66fe0424cp@chrX:42162203..42162241, +
3.1e-50FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:127681013..127681042, -
3.1e-50FFCP PHASE2:Hg19::chr3:156822661..156822696,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr3:156822661..156822696, -
3.1e-50FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr4:169559850..169559856, -
3.1e-50FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:128807259..128807281, +
3.1e-50FFCP PHASE2:Hg19::chr1:93128346..93128356,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:93128346..93128356, -
3.1e-50FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:127445866..127445873, +
3.1e-50FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr3:140054724..140054735, -
3.1e-50FFCP PHASE1:Hg19::chr4:157174023..157174034,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr4:157174023..157174034, +
3.1e-50FFCP PHASE1:Hg19::chr8:128691603..128691614,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:128691603..128691614, -
3.1e-50FFCP PHASE1:Hg19::chr2:163302793..163302800,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr2:163302793..163302800, -
3.1e-50FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr6:8389087..8389116, -
3.1e-50FFCP PHASE2:Hg19::chr16:53671764..53671771,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr16:53671764..53671771, -
3.1e-50FFCP PHASE1:Hg19::chr7:87232419..87232430,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr7:87232419..87232430, -
3.1e-50FFCP PHASE1:Hg19::chr11:63153941..63153942,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr11:63153941..63153942, +
3.1e-50FFCP PHASE1:Hg19::chr14:76289395..76289406,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr14:76289395..76289406, +
3.1e-50FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr15:60749901..60749904, -
3.1e-50FFCP PHASE1:Hg19::chr9:98505341..98505348,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr9:98505341..98505348, +
3.1e-50FFCP PHASE1:Hg19::chr2:148148505..148148515,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr2:148148505..148148515, -
3.1e-50FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr13:54830821..54830841, +
3.1e-50FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr7:87049573..87049608, -
3.1e-50FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr6:104674708..104674749, -
3.1e-50FFCP PHASE1:Hg19::chr10:2328652..2328660,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr10:2328652..2328660, +
3.1e-50FFCP PHASE2:Hg19::chr2:205036975..205037009,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr2:205036975..205037009, -
3.1e-50FFCP PHASE1:Hg19::chr8:127568784..127568794,+#_bb3440edd530cc3abd32f3c66fe0424cp6@ENST00000524320
3.1e-50FFCP PHASE1:Hg19::chr1:93128331..93128338,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:93128331..93128338, -
3.1e-50FFCP PHASE2:Hg19::chr13:46093198..46093203,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr13:46093198..46093203, +
3.1e-50FFCP PHASE1:Hg19::chr8:99425711..99425716,-#_bb3440edd530cc3abd32f3c66fe0424cp1@ENST00000518956
3.1e-50FFCP PHASE1:Hg19::chr8:127438794..127438800,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:127438794..127438800, +
3.1e-50FFCP PHASE1:Hg19::chr1:219739282..219739288,-#_bb3440edd530cc3abd32f3c66fe0424cp@chr1:219739282..219739288, -
3.1e-50FFCP PHASE1:Hg19::chr8:128415915..128415922,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr8:128415915..128415922, +
3.1e-50FFCP PHASE2:Hg19::chr7:30499737..30499761,+#_bb3440edd530cc3abd32f3c66fe0424cp@chr7:30499737..30499761, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001242&oldid=3277217"