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{{UBERON
{{UBERON
|id=UBERON:0001744
|alt_id=UBERON:FMA_55220-MA_0002436
|name=lymphoid tissue
|namespace=
|def="Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
|xref=BTO:0000753;;FMA:55220;;GAID:342;;galen:LymphoidTissue;;MA:0002436;;MESH:A.10.549;;ncithesaurus:Lymphoid_Tissue;;SCTID:181768009
|is_a=UBERON:0000479
|synonym="lymphatic tissue" EXACT [];;"lymphocytic tissue" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_55220-MA_0002436
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001744
|is_a=UBERON:0000479
|is_obsolete=
|located_in=
|located_in=
|name=lymphoid tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002193;;UBERON:0002465
|part_of=UBERON:0002193;;UBERON:0002465
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="lymphatic tissue" EXACT [];;"lymphocytic tissue" EXACT []
|union_of=
|xref=BTO:0000753;;FMA:55220;;GAID:342;;galen:LymphoidTissue;;MA:0002436;;MESH:A.10.549;;ncithesaurus:Lymphoid_Tissue;;SCTID:181768009
}}
}}

Latest revision as of 17:20, 12 September 2014

Name:lymphoid tissue
Namespace:FANTOM
Definition:"Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
Xrefs:
links:

BTO:0000753
FMA:55220
GAID:342
galen:LymphoidTissue
MA:0002436
MESH:A.10.549
ncithesaurus:Lymphoid_Tissue

SCTID:181768009
Synonyms: "lymphatic tissue" EXACT []
"lymphocytic tissue" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_55220-MA_0002436
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue)
part_of:UBERON:0002193(hemolymphoid system),UBERON:0002465(lymphoid system)



Children

is a:UBERON:0012069 (epithelium-associated lymphoid tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001744 (lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_7ff2e1def5c9cd32f90af42bed913aaap2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_7ff2e1def5c9cd32f90af42bed913aaap2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_7ff2e1def5c9cd32f90af42bed913aaap1@IGKV6-21
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_7ff2e1def5c9cd32f90af42bed913aaap@chr19:5850872..5850893, -
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_7ff2e1def5c9cd32f90af42bed913aaap7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_7ff2e1def5c9cd32f90af42bed913aaap2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_7ff2e1def5c9cd32f90af42bed913aaap1@IGKV6-21
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_7ff2e1def5c9cd32f90af42bed913aaap@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_7ff2e1def5c9cd32f90af42bed913aaap2@IGHV3-53
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_7ff2e1def5c9cd32f90af42bed913aaap7@CU692075
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_8c96b0f733ff2d89c8c4372b9a7fc264p8@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_8c96b0f733ff2d89c8c4372b9a7fc264p30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr19:14662395..14662414, +
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_8c96b0f733ff2d89c8c4372b9a7fc264p10@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr6:168095835..168095838, -
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr11:1263622..1263627, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_8c96b0f733ff2d89c8c4372b9a7fc264p8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_8c96b0f733ff2d89c8c4372b9a7fc264p10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_8c96b0f733ff2d89c8c4372b9a7fc264p30@MUC5B
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr10:135337234..135337244, -
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr10:135337234..135337244, -
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr12:52478564..52478569, +
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp6@METTL19
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1260725..1260734, +
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp30@RPRD1B
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr12:52478564..52478569, +
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp6@METTL19
1.87e-86FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr9:69086930..69086933, +
1.87e-86FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115974938..115974945, -
1.87e-86FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p1@ENSMUST00000114212
1.87e-86FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr9:69086930..69086933, +
1.87e-86FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115974938..115974945, -
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_f7873f47078b10f870e23fba81db8d23p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_f7873f47078b10f870e23fba81db8d23p2@FCRL4
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_f7873f47078b10f870e23fba81db8d23p2@FCRL4
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_f7873f47078b10f870e23fba81db8d23p@chr12:52478546..52478552, +
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_eff6b61b7f0c01f547111d5323c61c64p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_eff6b61b7f0c01f547111d5323c61c64p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_eff6b61b7f0c01f547111d5323c61c64p@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_eff6b61b7f0c01f547111d5323c61c64p@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_eff6b61b7f0c01f547111d5323c61c64p1@BC131817
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_eff6b61b7f0c01f547111d5323c61c64p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_eff6b61b7f0c01f547111d5323c61c64p@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_eff6b61b7f0c01f547111d5323c61c64p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_eff6b61b7f0c01f547111d5323c61c64p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_eff6b61b7f0c01f547111d5323c61c64p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_eff6b61b7f0c01f547111d5323c61c64p1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_eff6b61b7f0c01f547111d5323c61c64p@chr11:1265985..1265990, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_bfe3c20827da2e88dcffdec71251ae6cp43@LPP
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_bfe3c20827da2e88dcffdec71251ae6cp10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_bfe3c20827da2e88dcffdec71251ae6cp58@LPP
4.66e-66FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr1:152382640..152382645, +
4.66e-66FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_bfe3c20827da2e88dcffdec71251ae6cp9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_bfe3c20827da2e88dcffdec71251ae6cp10@KLK11
4.66e-66FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr6:30954084..30954093, -
4.66e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_bfe3c20827da2e88dcffdec71251ae6cp43@LPP
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr1:152382640..152382645, +
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:29006845..29006854, -
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:49921251..49921263, +
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr11:1283367..1283377, +

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