Personal tools

UBERON:0001872: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001872
|alt_id=UBERON:FMA_61826-MA_0000916
|name=parietal lobe
|anatomical_img_id=FMA:61826
|namespace=
|def="Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe]
|xref=BTO:0001001;;EFO:0000914;;EV:0100168;;FMA:61826;;GAID:680;;http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png;;MA:0000916;;MAT:0000506;;MESH:A.08.186.211.730.885.213.670;;ncithesaurus:Parietal_Lobe_of_the_Brain;;NIF_GrossAnatomy:birnlex_1148;;OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA;;SCTID:180922007
|is_a=UBERON:0000064;;UBERON:0004121
|synonym="lobus parietalis" RELATED LATIN [Wikipedia:Parietal_lobe];;"parietal cortex" EXACT [];;"parietal neocortex" EXACT [DHB:PCx];;"parietal region" EXACT [];;"regio parietalis" EXACT [FMA:61826, FMA:TA]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_61826-MA_0000916
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001872
|is_a=UBERON:0016526
|is_obsolete=
|located_in=
|located_in=
|name=parietal lobe
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001950
|part_of=UBERON:0001950
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="lobus parietalis" RELATED LATIN [Wikipedia:Parietal_lobe];;"parietal cortex" EXACT [];;"parietal neocortex" EXACT [DHB:PCx];;"parietal region" EXACT [];;"regio parietalis" EXACT [FMA:61826, FMA:TA]
|union_of=
|xref=BTO:0001001;;EFO:0000914;;EV:0100168;;FMA:61826;;GAID:680;;http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray726_parietal_lobe.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png;;MA:0000916;;MAT:0000506;;MESH:A.08.186.211.730.885.213.670;;ncithesaurus:Parietal_Lobe_of_the_Brain;;NIF_GrossAnatomy:birnlex_1148;;OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA;;SCTID:180922007
}}
}}

Latest revision as of 17:21, 12 September 2014

Name:parietal lobe
Namespace:FANTOM
Definition:"Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe]
Xrefs:
links:

BTO:0001001
EFO:0000914
EV:0100168
FMA:61826
GAID:680
[ Gray726_parietal_lobe.png Gray726_parietal_lobe.png]
[ 200px-Gray726_parietal_lobe.png 200px-Gray726_parietal_lobe.png]
MA:0000916
MAT:0000506
MESH:A.08.186.211.730.885.213.670
ncithesaurus:Parietal_Lobe_of_the_Brain
NIF_GrossAnatomy:birnlex_1148
OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA

SCTID:180922007
Synonyms: "lobus parietalis" RELATED LATIN [Wikipedia:Parietal_lobe]
"parietal cortex" EXACT []
"parietal neocortex" EXACT [DHB:PCx]
"parietal region" EXACT []
"regio parietalis" EXACT [FMA:61826, FMA:TA]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_61826-MA_0000916
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0016526(lobe of cerebral hemisphere)
part_of:UBERON:0001950(neocortex)



Children

is a:FF:10356-105E5 (parietal lobe, newborn, donor10223),FF:10373-105G4 (parietal cortex, adult, donor10258)
derives from:FF:0010034 (human parietal lobe - adult sample),FF:0010072 (human parietal lobe - fetal sample)
part of:UBERON:0002581 (postcentral gyrus),FF:0010072 (human parietal lobe - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001872 (parietal lobe), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.17e-63FFCP PHASE2:Hg19::chr18:5721892..5721909,+#_9393da0c4dd21fe090d1141d4658c4c4p@chr18:5721892..5721909, +
2.17e-63FFCP PHASE1:Hg19::chr18:5721892..5721909,+#_9393da0c4dd21fe090d1141d4658c4c4p@chr18:5721892..5721909, +
1.65e-59FFCP PHASE1:Hg19::chr6:109200527..109200537,+#_29ef8ebacc6986f49c9802330fd0e0ccp@chr6:109200527..109200537, +
1.65e-59FFCP PHASE2:Hg19::chr6:109200527..109200537,+#_29ef8ebacc6986f49c9802330fd0e0ccp@chr6:109200527..109200537, +
3.85e-58FFCP PHASE2:Hg19::chr7:39017504..39017519,+#_7c821cdb54234241d5ee9ff9100e7043p3@POU6F2
3.85e-58FFCP PHASE1:Hg19::chr7:39017504..39017519,+#_7c821cdb54234241d5ee9ff9100e7043p3@POU6F2
2.41e-57FFCP PHASE2:Hg19::chr8:143660403..143660420,+#_144d7fabd2d6112c32021e02a4b114f1p@chr8:143660403..143660420, +
2.41e-57FFCP PHASE1:Hg19::chr8:143660403..143660420,+#_144d7fabd2d6112c32021e02a4b114f1p@chr8:143660403..143660420, +
3.89e-55FFCP PHASE1:Hg19::chr12:58026893..58026902,-#_4da3a76f81b943872a9ec8ca05670c02p6@B4GALNT1
3.89e-55FFCP PHASE2:Hg19::chr12:58026893..58026902,-#_4da3a76f81b943872a9ec8ca05670c02p6@B4GALNT1
2.08e-54FFCP PHASE1:Hg19::chr2:162280765..162280777,+#_0d125d526b535bb719024f431f22278cp6@SLC4A10
2.08e-54FFCP PHASE2:Hg19::chr2:162280765..162280777,+#_0d125d526b535bb719024f431f22278cp6@SLC4A10
3.74e-53FFCP PHASE2:Hg19::chr11:94134299..94134309,-#_3062b6549e8c71aaeb3af16401234306p2@AB384231
3.74e-53FFCP PHASE2:Hg19::chr12:16701927..16701933,-#_3062b6549e8c71aaeb3af16401234306p@chr12:16701927..16701933, -
3.74e-53FFCP PHASE1:Hg19::chr12:16701927..16701933,-#_3062b6549e8c71aaeb3af16401234306p@chr12:16701927..16701933, -
3.74e-53FFCP PHASE1:Hg19::chr11:94134299..94134309,-#_3062b6549e8c71aaeb3af16401234306p2@AB384231
1.75e-51FFCP PHASE1:Hg19::chr3:33686743..33686759,-#_5ae6d961fd4cd3f52fd763b96ddd3818p16@CLASP2
1.75e-51FFCP PHASE2:Hg19::chr3:33686743..33686759,-#_5ae6d961fd4cd3f52fd763b96ddd3818p16@CLASP2
3.3e-51FFCP PHASE1:Hg19::chr8:4852195..4852205,-#_23ecb09a9e87a6b8368a95ba48cd8269p13@CSMD1
3.3e-51FFCP PHASE2:Hg19::chr8:4852195..4852205,-#_23ecb09a9e87a6b8368a95ba48cd8269p13@CSMD1
2.05e-49FFCP PHASE2:Hg19::chr2:162273032..162273042,+#_0eb793ffde3f678a35322f7aa6031171p13@TBR1
2.05e-49FFCP PHASE1:Hg19::chr2:162273032..162273042,+#_0eb793ffde3f678a35322f7aa6031171p13@TBR1
3.21e-49FFCP PHASE2:Hg19::chr7:45113897..45113916,+#_d37aac7a6e71314ff2af96b8ee467023p@chr7:45113897..45113916, +
3.21e-49FFCP PHASE1:Hg19::chr7:45113897..45113916,+#_d37aac7a6e71314ff2af96b8ee467023p@chr7:45113897..45113916, +
5.27e-49FFCP PHASE2:Hg19::chr2:162273824..162273837,+#_b81452eb8d94510c52420d238e2423dep16@TBR1
5.27e-49FFCP PHASE1:Hg19::chr2:162273824..162273837,+#_b81452eb8d94510c52420d238e2423dep16@TBR1
9.36e-48FFCP PHASE2:Hg19::chr20:45980635..45980649,-#_86da6bdc41dc25784eede7ce1f65672fp17@ZMYND8
9.36e-48FFCP PHASE1:Hg19::chr20:45980635..45980649,-#_86da6bdc41dc25784eede7ce1f65672fp17@ZMYND8
1.03e-47FFCP PHASE2:Hg19::chr6:155537942..155537959,+#_940d9a07b36886799452cf6483e768c2p9@TIAM2
1.03e-47FFCP PHASE1:Hg19::chr6:155537942..155537959,+#_940d9a07b36886799452cf6483e768c2p9@TIAM2
2.7e-47FFCP PHASE2:Hg19::chr2:115200168..115200182,+#_46427b190f05c18c4e77297f9f985076p11@DPP10
2.7e-47FFCP PHASE1:Hg19::chr2:115200168..115200182,+#_46427b190f05c18c4e77297f9f985076p11@DPP10
1.58e-45FFCP PHASE2:Hg19::chrX:9881014..9881038,+#_dbb704bb27ca5b120c75418b3540aedap12@SHROOM2
1.58e-45FFCP PHASE1:Hg19::chrX:9881014..9881038,+#_dbb704bb27ca5b120c75418b3540aedap12@SHROOM2
1.9e-45FFCP PHASE2:Hg19::chr19:13617584..13617596,-#_eaf29186558f2e1835363e8c6fc4ee53p7@CACNA1A
1.9e-45FFCP PHASE1:Hg19::chr19:13617584..13617596,-#_eaf29186558f2e1835363e8c6fc4ee53p7@CACNA1A
1.99e-45FFCP PHASE2:Hg19::chr9:73728085..73728108,-#_35a6c9e25722470d9eba78e81ff7f48dp@chr9:73728085..73728108, -
1.99e-45FFCP PHASE1:Hg19::chr9:73728085..73728108,-#_35a6c9e25722470d9eba78e81ff7f48dp@chr9:73728085..73728108, -
2.81e-45FFCP PHASE2:Hg19::chr12:130303291..130303304,-#_47a96781972540626c0fc760146615cdp@chr12:130303291..130303304, -
2.81e-45FFCP PHASE1:Hg19::chr12:130303291..130303304,-#_47a96781972540626c0fc760146615cdp@chr12:130303291..130303304, -
2.81e-45FFCP PHASE2:Hg19::chr8:48758335..48758346,-#_47a96781972540626c0fc760146615cdp@chr8:48758335..48758346, -
2.81e-45FFCP PHASE1:Hg19::chr8:48758335..48758346,-#_47a96781972540626c0fc760146615cdp@chr8:48758335..48758346, -
2.81e-45FFCP PHASE1:Hg19::chr10:116850978..116851000,+#_47a96781972540626c0fc760146615cdp@chr10:116850978..116851000, +
2.81e-45FFCP PHASE2:Hg19::chr10:116850978..116851000,+#_47a96781972540626c0fc760146615cdp@chr10:116850978..116851000, +
4.44e-45FFCP PHASE2:Hg19::chr11:132897766..132897783,-#_8e83fed868768d0b0eef7e50a77f0784p@chr11:132897766..132897783, -
4.44e-45FFCP PHASE1:Hg19::chr11:132897766..132897783,-#_8e83fed868768d0b0eef7e50a77f0784p@chr11:132897766..132897783, -
5.45e-45FFCP PHASE2:Hg19::chr11:132845422..132845423,-#_6e5292c809bd7f9e96e21f1bc2035748p@chr11:132845422..132845423, -
5.45e-45FFCP PHASE1:Hg19::chr11:132845422..132845423,-#_6e5292c809bd7f9e96e21f1bc2035748p@chr11:132845422..132845423, -
6.33e-45FFCP PHASE1:Hg19::chr2:76412175..76412186,+#_ea4c0b74cd08262cb3316c7f96151e97p@chr2:76412175..76412186, +
6.33e-45FFCP PHASE2:Hg19::chr2:76412175..76412186,+#_ea4c0b74cd08262cb3316c7f96151e97p@chr2:76412175..76412186, +
6.33e-45FFCP PHASE2:Hg19::chr2:50149146..50149156,-#_ea4c0b74cd08262cb3316c7f96151e97p35@NRXN1
6.33e-45FFCP PHASE1:Hg19::chr2:50149146..50149156,-#_ea4c0b74cd08262cb3316c7f96151e97p35@NRXN1
8.23e-45FFCP PHASE1:Hg19::chr6:100441869..100441892,-#_86e08257086c0b3709304dc1614f682ep3@MCHR2
8.23e-45FFCP PHASE2:Hg19::chr6:100441869..100441892,-#_86e08257086c0b3709304dc1614f682ep3@MCHR2
8.55e-45FFCP PHASE1:Hg19::chr14:60212694..60212703,-#_fd00c4fea1f2be9a5dba2320b4ca01b4p@chr14:60212694..60212703, -
8.55e-45FFCP PHASE2:Hg19::chr14:60212694..60212703,-#_fd00c4fea1f2be9a5dba2320b4ca01b4p@chr14:60212694..60212703, -
1.56e-44FFCP PHASE1:Hg19::chr13:97152251..97152262,+#_810ccbfd26759f20f90f4613f5576cd4p@chr13:97152251..97152262, +
1.56e-44FFCP PHASE2:Hg19::chr13:97152251..97152262,+#_810ccbfd26759f20f90f4613f5576cd4p@chr13:97152251..97152262, +
9.22e-44FFCP PHASE1:Hg19::chr2:200335983..200335994,-#_f272a424ea4b76972c6b5699c5c4442bp16@SATB2
9.22e-44FFCP PHASE2:Hg19::chr2:200335983..200335994,-#_f272a424ea4b76972c6b5699c5c4442bp16@SATB2
4.49e-43FFCP PHASE2:Hg19::chr4:46995689..46995706,+#_130f194e7e2f14812f5e028f8e55dadbp7@GABRB1
4.49e-43FFCP PHASE1:Hg19::chr4:46995689..46995706,+#_130f194e7e2f14812f5e028f8e55dadbp7@GABRB1
4.9e-43FFCP PHASE1:Hg19::chr2:162273873..162273885,+#_e163ac2fa2af606c6a31d97bbf0efd76p14@TBR1
4.9e-43FFCP PHASE2:Hg19::chr2:162273873..162273885,+#_e163ac2fa2af606c6a31d97bbf0efd76p14@TBR1
5.34e-43FFCP PHASE2:Hg19::chr4:158142034..158142043,+#_2c5b83ed1a5ed8ccb3ea11498992822fp10@GRIA2
5.34e-43FFCP PHASE1:Hg19::chr4:158142034..158142043,+#_2c5b83ed1a5ed8ccb3ea11498992822fp10@GRIA2
6.24e-43FFCP PHASE1:Hg19::chr1:177140795..177140813,+#_e1b4c59e42dbcb4220ab0fdc1d2acd7fp3@FAM5B
6.24e-43FFCP PHASE2:Hg19::chr1:177140795..177140813,+#_e1b4c59e42dbcb4220ab0fdc1d2acd7fp3@FAM5B
6.95e-43FFCP PHASE2:Hg19::chr10:75632990..75633015,-#_40fb69f59247d391bb1d195bcdc85b20p@chr10:75632990..75633015, -
6.95e-43FFCP PHASE1:Hg19::chr10:75632990..75633015,-#_40fb69f59247d391bb1d195bcdc85b20p@chr10:75632990..75633015, -
7.58e-43FFCP PHASE2:Hg19::chr3:63428784..63428795,+#_1a53be3c362b86b1add2722ac77b5723p8@SYNPR
7.58e-43FFCP PHASE1:Hg19::chr3:63428784..63428795,+#_1a53be3c362b86b1add2722ac77b5723p8@SYNPR
9.85e-43FFCP PHASE1:Hg19::chr7:54610331..54610338,+#_58c2817a493fd1b268c6294d5806ae2ep12@VSTM2A
9.85e-43FFCP PHASE2:Hg19::chr7:54610331..54610338,+#_58c2817a493fd1b268c6294d5806ae2ep12@VSTM2A
1.07e-42FFCP PHASE2:Hg19::chr21:16999597..16999614,-#_a44d990cc44dcdd3cbe1f810f8eb56c5p@chr21:16999597..16999614, -
1.07e-42FFCP PHASE2:Hg19::chr11:105481393..105481404,+#_a44d990cc44dcdd3cbe1f810f8eb56c5p10@GRIA4
1.07e-42FFCP PHASE1:Hg19::chr11:105481393..105481404,+#_a44d990cc44dcdd3cbe1f810f8eb56c5p10@GRIA4
1.07e-42FFCP PHASE1:Hg19::chr21:16999597..16999614,-#_a44d990cc44dcdd3cbe1f810f8eb56c5p@chr21:16999597..16999614, -
1.64e-42FFCP PHASE2:Hg19::chr4:90692879..90692891,-#_7a681b46ee847385f7e4fc893903e204p@chr4:90692879..90692891, -
1.64e-42FFCP PHASE1:Hg19::chr4:90692879..90692891,-#_7a681b46ee847385f7e4fc893903e204p@chr4:90692879..90692891, -
1.83e-42FFCP PHASE1:Hg19::chr10:79383809..79383833,+#_7766299a8e8680ea455bd689babe9ddfp@chr10:79383809..79383833, +
1.83e-42FFCP PHASE2:Hg19::chr10:79383809..79383833,+#_7766299a8e8680ea455bd689babe9ddfp@chr10:79383809..79383833, +
2.03e-42FFCP PHASE1:Hg19::chr8:145555308..145555319,-#_e0fffb050fed5986ac40aaf08d025ec3p3@SCRT1
2.03e-42FFCP PHASE2:Hg19::chr8:145555308..145555319,-#_e0fffb050fed5986ac40aaf08d025ec3p3@SCRT1
2.52e-42FFCP PHASE1:Hg19::chr2:180725954..180725965,-#_8d665e89fe5d993b3e5d4f5f92a299d9p11@ZNF385B
2.52e-42FFCP PHASE2:Hg19::chr2:180725954..180725965,-#_8d665e89fe5d993b3e5d4f5f92a299d9p11@ZNF385B
5.31e-42FFCP PHASE1:Hg19::chr11:85430299..85430311,-#_3c3d3e039c0b9e196dc80cfc247a75c4p13@SYTL2
5.31e-42FFCP PHASE2:Hg19::chr11:85430299..85430311,-#_3c3d3e039c0b9e196dc80cfc247a75c4p13@SYTL2
7.31e-42FFCP PHASE1:Hg19::chr2:215275814..215275834,+#_bfe2b7db857e8a860c28f0e06e5ec036p1@VWC2L
7.31e-42FFCP PHASE1:Hg19::chr8:4852499..4852508,-#_bfe2b7db857e8a860c28f0e06e5ec036p15@CSMD1
7.31e-42FFCP PHASE2:Hg19::chr2:215275814..215275834,+#_bfe2b7db857e8a860c28f0e06e5ec036p1@VWC2L
7.31e-42FFCP PHASE2:Hg19::chr8:4852499..4852508,-#_bfe2b7db857e8a860c28f0e06e5ec036p15@CSMD1
8.21e-42FFCP PHASE2:Hg19::chr2:162273893..162273908,+#_f3bb1f557ebeafecfc3d47b54cec8e5fp12@TBR1
8.21e-42FFCP PHASE1:Hg19::chr2:162273893..162273908,+#_f3bb1f557ebeafecfc3d47b54cec8e5fp12@TBR1
1.36e-41FFCP PHASE2:Hg19::chr17:36757284..36757327,+#_45b61c1ed388c507028c5b79ebd91f2fp@chr17:36757284..36757327, +
1.36e-41FFCP PHASE1:Hg19::chr17:36757284..36757327,+#_45b61c1ed388c507028c5b79ebd91f2fp@chr17:36757284..36757327, +
5.67e-41FFCP PHASE1:Hg19::chr6:100442077..100442114,-#_9f0e370043f33c78df2b95a6e57d7e57p1@MCHR2
5.67e-41FFCP PHASE2:Hg19::chr6:100442077..100442114,-#_9f0e370043f33c78df2b95a6e57d7e57p1@MCHR2
9.35e-41FFCP PHASE1:Hg19::chr5:169931156..169931170,+#_3cd22720e53b7ed8b1f94a579a7ebe8cp8@KCNIP1
9.35e-41FFCP PHASE2:Hg19::chr5:169931156..169931170,+#_3cd22720e53b7ed8b1f94a579a7ebe8cp8@KCNIP1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001872&oldid=3277308"