UBERON:0002412: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_9914-MA_0000309-ZFA_0001189 | ||
| | |anatomical_img_id=FMA:9914 | ||
|comment=Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear | |comment=Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear | ||
|created_by= | |created_by= | ||
| | |def="Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0011094 | |develops_from=UBERON:0011094 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002412 | |||
|is_a=UBERON:0002513 ;;UBERON:0008001 ;;UBERON:0010913 ;;UBERON:0015005 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vertebra | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001130 | |part_of=UBERON:0001130 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string;;UBPROP:0000001 "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string;;UBPROP:0000001 "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="vertebra bone" EXACT [] | ||
|union_of= | |||
|xref=AAO:0000691;;EFO:0001371;;FMA:9914;;galen:Vertebra;;MA:0000309;;ncithesaurus:Vertebra;;OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA;;SCTID:181817002;;TAO:0001189;;VHOG:0001143;;XAO:0004019;;ZFA:0001189 | |||
}} | }} | ||
Latest revision as of 17:31, 12 September 2014
| Name: | vertebra | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[FMA]. All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)[ZFA]." [FMA:9914, Wikipedia:Vertebra, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: | "vertebra bone" EXACT [] | ||
| Comments: | Editor notes: Consider changing name to make distinction from inferred superclass 'vertebral element' clear | ||
| Alt_id: | UBERON:FMA_9914-MA_0000309-ZFA_0001189 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002513(endochondral bone),UBERON:0008001(irregular bone),UBERON:0010913(vertebral element),UBERON:0015005(vertebra endochondral element) |
|---|---|
| develops_from: | UBERON:0011094(vertebra cartilage element) |
| part_of: | UBERON:0001130(vertebral column) |
Children
| part of: | CL:0002572 (vertebral mesenchymal stem cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002412 (vertebra), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
Property "Property value" (as page type) with input value "UBPROP:0000001 "Endochondral bone that forms around the notochord and is part of the vertebral column.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Main component of the vertebral column. It consists of two essential parts, a dorsal neural arch and a ventral centrum.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
