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{{UBERON
{{UBERON
|id=UBERON:0003077
|alt_id=UBERON:XAO_0000259-ZFA_0000255
|name=paraxial mesoderm
|namespace=
|def="The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm]
|xref=AAO:0010568;;EFO:0003515;;EMAPA:16183;;EMAPA:16751;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Paraxial_Mesoderm;;SCTID:361475002;;TAO:0000255;;VHOG:0000114;;XAO:0000259;;ZFA:0000255
|is_a=UBERON:0005291;;UBERON:0007524
|synonym="mesoderma paraxiale" RELATED LATIN [Wikipedia:Paraxial_mesoderm];;"paraxial mesenchyme" EXACT [UBERONREF:0000002, ZFA:0000255];;"somitic mesoderm" EXACT [ISBN:9780878932504]
|comment=AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here)
|comment=AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here)
|alt_id=UBERON:XAO_0000259-ZFA_0000255
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=UBERON:0007285
|develops_from=UBERON:0007285
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003077
|is_a=UBERON:0004120 ;;UBERON:0005291 ;;UBERON:0007524 ;;UBERON:0015212
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000926
|name=paraxial mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0000926
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="mesoderma paraxiale" RELATED LATIN [Wikipedia:Paraxial_mesoderm];;"paraxial mesenchyme" EXACT [UBERONREF:0000002, ZFA:0000255];;"somitic mesoderm" EXACT [ISBN:9780878932504]
|union_of=
|xref=AAO:0010568;;EFO:0003515;;EMAPA:16183;;EMAPA:16751;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Paraxial_Mesoderm;;SCTID:361475002;;TAO:0000255;;VHOG:0000114;;XAO:0000259;;ZFA:0000255
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:paraxial mesoderm
Namespace:FANTOM
Definition:"The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube[GO]" [GO:0048339, Wikipedia:Paraxial_mesoderm]
Xrefs:
links:

AAO:0010568
EFO:0003515
EMAPA:16183
EMAPA:16751
[ Gray19_with_color.png Gray19_with_color.png]
[ 200px-Gray19_with_color.png 200px-Gray19_with_color.png]
ncithesaurus:Paraxial_Mesoderm
SCTID:361475002
TAO:0000255
VHOG:0000114
XAO:0000259

ZFA:0000255
Synonyms: "mesoderma paraxiale" RELATED LATIN [Wikipedia:Paraxial_mesoderm]
"paraxial mesenchyme" EXACT [UBERONREF:0000002, ZFA:0000255]
"somitic mesoderm" EXACT [ISBN:9780878932504]
Comments:AO notes: note that all AOs differ in the relationship between this structure and the mesoderm; in ZFA it is a subclass (and this is implied by the GO definition and GO relationships), in AAO it is part of, and in EHDAA2 it develops from the mesoderm (but in EHDAA2 the naming convention is to use 'paraxial mesenchyme', rather than 'paraxial mesoderm'). Also in ZFA it is part of the trunk whereas this conflicts with the division into head and trunk in ehdaa2 (which we follow here)
Alt_id: UBERON:XAO_0000259-ZFA_0000255
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue),UBERON:0015212(lateral structure)
develops_from:UBERON:0007285(presumptive paraxial mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0000926(mesoderm)



Children

part of:UBERON:0003059 (presomitic mesoderm),UBERON:0009617 (head paraxial mesoderm),UBERON:0009618 (trunk paraxial mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003077 (paraxial mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.34e-47FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_3f8a1915edfe77c0794b44d9e626b7d2p@chrX:160838683..160838694, +
1.34e-47FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_3f8a1915edfe77c0794b44d9e626b7d2p@chrX:160838683..160838694, +
8.78e-44FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_a5bcb73ee49cfa290a5fb56f20d9a61bp8@ARHGAP22
8.78e-44FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_a5bcb73ee49cfa290a5fb56f20d9a61bp8@ARHGAP22
5.06e-41FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3c007444b5115837287a4489a03a3544p@chrX:65748600..65748616, +
5.06e-41FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3c007444b5115837287a4489a03a3544p@chr12:105433069..105433075, -
5.06e-41FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3c007444b5115837287a4489a03a3544p@chrX:65748600..65748616, +
5.06e-41FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3c007444b5115837287a4489a03a3544p@chr12:105433069..105433075, -
3.83e-40FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_bebe98222e6ec6a12ca610b134c8d6d6p@chr6:53359400..53359406, +
3.83e-40FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_bebe98222e6ec6a12ca610b134c8d6d6p@chr6:53359400..53359406, +
6.64e-40FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_bbba0381625ba0e79ad5c072240293b9p@chrX:160838787..160838800, +
6.64e-40FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_bbba0381625ba0e79ad5c072240293b9p@chrX:160838787..160838800, +
1.1e-38FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_0c1f3917ffebf5fc9226f8284690fc18p4@ARHGAP22
1.1e-38FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_0c1f3917ffebf5fc9226f8284690fc18p4@ARHGAP22
2.48e-38FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_687c2e633fc716a1a081810f3a8a6846p@chr9:35685631..35685657, +
2.48e-38FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_687c2e633fc716a1a081810f3a8a6846p@chr9:35685631..35685657, +
9.32e-38FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_a4699ee1d4eb6c7d9938e1e9d4910654p2@SASH1
9.32e-38FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_a4699ee1d4eb6c7d9938e1e9d4910654p2@SASH1
6.65e-36FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_1054f71e13e06a9543ca6c37f109c37bp@chr11:81849982..81850000, +
6.65e-36FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_1054f71e13e06a9543ca6c37f109c37bp@chr11:81849982..81850000, +
6.84e-36FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_bb50df014894fbb93b2044d690187a14p3@ARHGAP22
6.84e-36FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_bb50df014894fbb93b2044d690187a14p3@ARHGAP22
1.05e-34FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_3e9d0fed72f6059f5507b3837d690d53p2@RCN3
1.05e-34FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_3e9d0fed72f6059f5507b3837d690d53p2@RCN3
9.31e-34FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_8c38408f6619fa031c8f13e3763a7e81p@chr9:35685445..35685517, +
9.31e-34FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_8c38408f6619fa031c8f13e3763a7e81p@chr9:35685445..35685517, +
1.65e-33FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_b4f8ef76b0a3c87691b5a09234d2dc06p@chr9:35684475..35684520, +
1.65e-33FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_b4f8ef76b0a3c87691b5a09234d2dc06p@chr9:35684475..35684520, +
1.81e-33FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_965fd4b959bd16ff67c55bbab8a3db6ep@chr13:119579287..119579292, +
1.81e-33FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_965fd4b959bd16ff67c55bbab8a3db6ep@chr13:119579287..119579292, +
2.11e-33FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_6b52cdaf2174d8ee8760b594881669b1p@chr17:14813242..14813246, -
2.11e-33FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_6b52cdaf2174d8ee8760b594881669b1p@chr17:14813242..14813246, -
2.37e-33FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_a8f8b6efee98e4b84c18eed492ec1074p3@IFI27L2
2.37e-33FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_a8f8b6efee98e4b84c18eed492ec1074p3@IFI27L2
3.52e-33FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_5dea0caabad130bd008915f04b840d09p2@LRRC17
3.52e-33FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_5dea0caabad130bd008915f04b840d09p2@LRRC17
9.55e-33FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_756bb9d037fa0ef7c2987c95b60f2feap1@LRRC17
9.55e-33FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_756bb9d037fa0ef7c2987c95b60f2feap1@LRRC17
1.29e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_290b0400e3d60fab4f95665acea71759p@chr9:35689148..35689192, +
1.29e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_290b0400e3d60fab4f95665acea71759p@chr9:35689148..35689192, +
3.07e-32FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_c90d7705b4e2b1eed6ac9f879443bf19p@chrX:160840048..160840057, +
3.07e-32FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_c90d7705b4e2b1eed6ac9f879443bf19p@chrX:160840025..160840037, +
3.07e-32FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_c90d7705b4e2b1eed6ac9f879443bf19p@chrX:160823859..160823870, +
3.07e-32FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_c90d7705b4e2b1eed6ac9f879443bf19p@chrX:160823859..160823870, +
3.07e-32FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_c90d7705b4e2b1eed6ac9f879443bf19p@chrX:160840025..160840037, +
3.07e-32FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_c90d7705b4e2b1eed6ac9f879443bf19p@chrX:160840048..160840057, +
4.43e-32FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_4fe08a8223baa5eed38fe83718a4ec4cp4@Gpr39
4.43e-32FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_4fe08a8223baa5eed38fe83718a4ec4cp4@Gpr39
6.91e-32FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_f98244d462f5f0f94f0a78bbf6c103d9p6@COL6A2
6.91e-32FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_f98244d462f5f0f94f0a78bbf6c103d9p6@COL6A2
1.87e-31FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_7b6334f6a26580aa028d7f85be91fecep2@COL6A2
1.87e-31FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_7b6334f6a26580aa028d7f85be91fecep2@COL6A2
1.97e-31FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_6a123422f0bb0d59c681bf2ea54784a2p@chr4:74703497..74703511, +
1.97e-31FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_6a123422f0bb0d59c681bf2ea54784a2p@chr4:74703497..74703511, +
2.69e-31FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_f5055f0dc97a63b09e0fd38b49ca3925p@chr2:134548872..134548879, -
2.69e-31FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_f5055f0dc97a63b09e0fd38b49ca3925p@chr2:134548872..134548879, -
5.9e-31FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_52281d4468fca6e6629a06441a57d05fp@chr9:35685273..35685313, +
5.9e-31FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_52281d4468fca6e6629a06441a57d05fp@chr9:35685273..35685313, +
1.59e-30FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_709a017275c513a9200a1a2ea92a54b5p1@AK074416
1.59e-30FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_709a017275c513a9200a1a2ea92a54b5p1@AK074416
2.29e-30FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_110c9c5f8e4319ce44f9b8b945d14094p2@LTBP1
2.29e-30FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_110c9c5f8e4319ce44f9b8b945d14094p2@LTBP1
4.87e-30FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_de716c4a4538345b6122f07160063806p@chr7:100773764..100773799, -
4.87e-30FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_de716c4a4538345b6122f07160063806p@chr7:100773764..100773799, -
5.03e-30FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_f51b4cb22b12125aeb4895846d2b607dp2@ELTD1
5.03e-30FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_f51b4cb22b12125aeb4895846d2b607dp2@ELTD1
5.09e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_f6363582dc335f0fbfcfead02fa2883ap1@CU675118
5.09e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_f6363582dc335f0fbfcfead02fa2883ap1@CU675118
1.0e-29FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_f8f17aeba7575215b3cd041b318e2e00p8@COL6A2
1.0e-29FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_f8f17aeba7575215b3cd041b318e2e00p8@COL6A2
1.82e-29FFCP PHASE2:Hg19::chr7:100773872..100773904,-#_3ca8f815b09836c4e5753404cd419982p@chr7:100773872..100773904, -
1.82e-29FFCP PHASE1:Hg19::chr7:100773872..100773904,-#_3ca8f815b09836c4e5753404cd419982p@chr7:100773872..100773904, -
1.95e-29FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_8dc970b904097a365e18b81edbc4a64dp@chr21:47542827..47542859, -
1.95e-29FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_8dc970b904097a365e18b81edbc4a64dp@chr21:47542827..47542859, -
2.28e-29FFCP PHASE1:Hg19::chr12:53492630..53492661,+#_ac2e5de35a07b3bbfe64410ea025e99dp4@IGFBP6
2.28e-29FFCP PHASE2:Hg19::chr12:53492630..53492661,+#_ac2e5de35a07b3bbfe64410ea025e99dp4@IGFBP6
2.31e-29FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_c79567a08460a6792c94f4a7770c549bp@chr11:102661517..102661541, -
2.31e-29FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_c79567a08460a6792c94f4a7770c549bp@chr11:102661517..102661541, -
3.61e-29FFCP PHASE2:Hg19::chr4:86699834..86699889,+#_94ee01e73990afddbe7238459477178dp5@ARHGAP24
3.61e-29FFCP PHASE1:Hg19::chr4:86699834..86699889,+#_94ee01e73990afddbe7238459477178dp5@ARHGAP24
5.21e-29FFCP PHASE2:Hg19::chr21:47532107..47532192,+#_b12a522ba5b2de7c706386515d390d8ap5@COL6A2
5.21e-29FFCP PHASE1:Hg19::chr21:47532107..47532192,+#_b12a522ba5b2de7c706386515d390d8ap5@COL6A2
5.71e-29FFCP PHASE2:Hg19::chr4:174430774..174430814,+#_562c9da2656b08d2749acd9e04aa80e2p@chr4:174430774..174430814, +
5.71e-29FFCP PHASE1:Hg19::chr4:174430774..174430814,+#_562c9da2656b08d2749acd9e04aa80e2p@chr4:174430774..174430814, +
5.79e-29FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_80423fcffeb373c572012277794accaap2@CXCL6
5.79e-29FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_80423fcffeb373c572012277794accaap2@CXCL6
7.21e-29FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_92ba0ecafdbc321b3e3e64557fbc989fp@chr1:127574253..127574264, +
7.21e-29FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_92ba0ecafdbc321b3e3e64557fbc989fp@chr1:127574253..127574264, +
7.95e-29FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0b66a50a9d2c69f7a24ecdff6afc4cbdp11@Fam198b
7.95e-29FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0b66a50a9d2c69f7a24ecdff6afc4cbdp11@Fam198b
8.93e-29FFCP PHASE1:Hg19::chr9:35685692..35685745,-#_9157c28858178772777a23f94fc14ed2p2@TPM2
8.93e-29FFCP PHASE2:Hg19::chr9:35685692..35685745,-#_9157c28858178772777a23f94fc14ed2p2@TPM2
9.39e-29FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_5d76f39d6b8799ab230bd169f088ba5ep7@Gpr39
9.39e-29FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_5d76f39d6b8799ab230bd169f088ba5ep7@Gpr39
1.07e-28FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_0133137e2f32480ff5b9b83f923ab68ep11@Gpr39
1.07e-28FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_0133137e2f32480ff5b9b83f923ab68ep11@Gpr39
1.11e-28FFCP PHASE1:Hg19::chr17:77020171..77020195,+#_1cfc9111a91b10345f625b1b2322122bp3@C1QTNF1
1.11e-28FFCP PHASE2:Hg19::chr17:77020171..77020195,+#_1cfc9111a91b10345f625b1b2322122bp3@C1QTNF1
1.22e-28FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_a116398c7b5bd61281652b666871d00cp@chrX:160839768..160839780, +
1.22e-28FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_a116398c7b5bd61281652b666871d00cp@chrX:160839768..160839780, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Mesoderm lateral to the neural tube and notochord that is divided into cranial and post-cranial portions. The trunk portions further segment into somites.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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