UBERON:0004134: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=todo - ensure definition works across species. | |comment=todo - ensure definition works across species. | ||
|created_by= | |created_by= | ||
| | |def="In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004134 | |||
|is_a=UBERON:0006853 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=proximal tubule | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001225;;UBERON:0001231 | |part_of=UBERON:0001225;;UBERON:0001231 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="proximal kidney tubule" EXACT [MESH:A.05.810.453.736.560.570];;"renal proximal tubule" EXACT [] | ||
|union_of= | |||
|xref=BTO:0001498;;EMAPA:28281;;MA:0002611;;MESH:A.05.810.453.736.560.570 | |||
}} | }} | ||
Latest revision as of 17:44, 12 September 2014
| Name: | proximal tubule | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "In mammals, the proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology[GO]." [GO:0072014] | ||
| Xrefs: |
| ||
| Synonyms: |
"proximal kidney tubule" EXACT [MESH:A.05.810.453.736.560.570] "renal proximal tubule" EXACT [] | ||
| Comments: | todo - ensure definition works across species. |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0006853(renal cortex tubule) |
|---|---|
| part_of: | UBERON:0001225(cortex of kidney),UBERON:0001231(nephron tubule) |
Children
| part of: | CL:0002306 (epithelial cell of proximal tubule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004134 (proximal tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_a8e05a71ad4e312b6f59f8f65b66ad1d | p10@WWC1 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_a8e05a71ad4e312b6f59f8f65b66ad1d | p10@WWC1 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_2f9104baa243103a488eda0a0c9efb87 | p39@WWTR1 |
| 1.01e-74 | FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_2f9104baa243103a488eda0a0c9efb87 | p39@WWTR1 |
| 1.24e-73 | FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_a95ac0c1d6533b1b18388fefc770ee52 | p1@ENST00000491264 |
| 1.24e-73 | FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_a95ac0c1d6533b1b18388fefc770ee52 | p1@ENST00000491264 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr8:6614884..6614885, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_0bb7f79c09131bdf2fa9d1662e91db7d | p@chr8:6614884..6614885, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_0ac78e7d05cc1f43df1b20f15053946a | p4@MEGF11 |
| 1.22e-59 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_0ac78e7d05cc1f43df1b20f15053946a | p4@MEGF11 |
| 3.75e-53 | FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_217034cd625f56be739eea2a102a96cf | p@chr9:114828174..114828179, + |
| 3.75e-53 | FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_217034cd625f56be739eea2a102a96cf | p@chr9:114828174..114828179, + |
| 1.65e-46 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_f67b33414ffa32132e935d2ef4c955d9 | p@chr7:140227349..140227360, - |
| 1.65e-46 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_f67b33414ffa32132e935d2ef4c955d9 | p@chr7:140227349..140227360, - |
| 7.81e-45 | FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_88135949b89163fe616c1ec16c478106 | p9@VARS2 |
| 7.81e-45 | FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_88135949b89163fe616c1ec16c478106 | p9@VARS2 |
| 6.91e-39 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_e3c9ae7c8ab6abf5f054f7474f05e950 | p11@VARS2 |
| 6.91e-39 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_e3c9ae7c8ab6abf5f054f7474f05e950 | p11@VARS2 |
| 1.49e-38 | FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_d033afa505864c8101a0ec08b36e4455 | p1@ENST00000534431 |
| 1.49e-38 | FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_d033afa505864c8101a0ec08b36e4455 | p1@ENST00000534431 |
| 2.64e-38 | FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_5dc3df26ffd50c35a99e63450ebefc84 | p@chr7:53466339..53466356, - |
| 2.64e-38 | FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_5dc3df26ffd50c35a99e63450ebefc84 | p@chr7:53466339..53466356, - |
| 3.48e-38 | FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_959734aaf49d657c77ed166b59b2be41 | p@chr17:18160552..18160565, - |
| 3.48e-38 | FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_959734aaf49d657c77ed166b59b2be41 | p@chr17:18160552..18160565, - |
| 3.86e-38 | FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_d6f8d878e36f9f95bbb3425d72a6b06d | p3@CLDN16 |
| 3.86e-38 | FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_d6f8d878e36f9f95bbb3425d72a6b06d | p3@CLDN16 |
| 5.76e-38 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_d02a2df7fe96fa7389646ee35ea67769 | p@chr1:1100457..1100470, + |
| 5.76e-38 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_d02a2df7fe96fa7389646ee35ea67769 | p@chr1:1100457..1100470, + |
| 2.08e-36 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_80d8daf68375e5a382c64011aa1d2e74 | p4@AIF1L |
| 2.08e-36 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_80d8daf68375e5a382c64011aa1d2e74 | p4@AIF1L |
| 2.25e-35 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_4cbfb0fffbe5e573685cb4f84e8cf793 | p4@PAX2 |
| 2.25e-35 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_4cbfb0fffbe5e573685cb4f84e8cf793 | p4@PAX2 |
| 3.2e-35 | FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_cb582b8d04726300ba735214656a4fba | p18@SCNN1A |
| 3.2e-35 | FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_cb582b8d04726300ba735214656a4fba | p18@SCNN1A |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_66109a9b1eaf5977fbeed0e193be1aeb | p@chr6:31023284..31023287, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_66109a9b1eaf5977fbeed0e193be1aeb | p@chr6:31023284..31023287, - |
| 2.09e-33 | FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_bea44a0717ed293934c870e63776f676 | p11@PAX8 |
| 2.09e-33 | FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_bea44a0717ed293934c870e63776f676 | p11@PAX8 |
| 1.41e-32 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_6ea820d651c7ada64da35bfe1d657ff1 | p2@C14orf105 |
| 1.41e-32 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_6ea820d651c7ada64da35bfe1d657ff1 | p2@C14orf105 |
| 2.17e-32 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_9837bdce7a30848ad8441e0c277b3d56 | p1@CLDN16 |
| 2.17e-32 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_9837bdce7a30848ad8441e0c277b3d56 | p1@CLDN16 |
| 3.1e-30 | FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_761e6f658924ebb8383222732e4ebfdf | p@chr3:112127710..112127713, - |
| 3.1e-30 | FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_761e6f658924ebb8383222732e4ebfdf | p@chr3:112127710..112127713, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_029a1b8e18037b0c18c259f0db50a874 | p@chr20:49347516..49347535, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_029a1b8e18037b0c18c259f0db50a874 | p@chr20:49347516..49347535, - |
| 6.17e-30 | FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_41094a97b7ac42864c6d816b6f465a14 | p5@VARS2 |
| 6.17e-30 | FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_41094a97b7ac42864c6d816b6f465a14 | p5@VARS2 |
| 8.26e-30 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_f0888a2725374dae240091201bcc3ed5 | p3@AIF1L |
| 8.26e-30 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_f0888a2725374dae240091201bcc3ed5 | p3@AIF1L |
| 8.74e-30 | FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_431185e4017a509a9f2f61cf5521a5dc | p4@CLDN16 |
| 8.74e-30 | FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_431185e4017a509a9f2f61cf5521a5dc | p4@CLDN16 |
| 4.28e-29 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_adfabb1338255ccc8ff619f6cafec05d | p@chr7:7606139..7606151, - |
| 4.28e-29 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_adfabb1338255ccc8ff619f6cafec05d | p@chr7:7606139..7606151, - |
| 5.09e-29 | FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_2260373560b2727eb669bc7f96ea59bd | p4@VARS2 |
| 5.09e-29 | FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_2260373560b2727eb669bc7f96ea59bd | p4@VARS2 |
| 4.74e-28 | FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_723efa28220f037013375cc7c2f05367 | p7@FXYD2 |
| 4.74e-28 | FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_723efa28220f037013375cc7c2f05367 | p7@FXYD2 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_375e8bbc1775a16f657e72934f822a5c | p11@FXYD2 |
| 2.38e-27 | FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_375e8bbc1775a16f657e72934f822a5c | p11@FXYD2 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_dedd9f3d7d87b073b0a3bab27de6556e | p2@ENST00000354541 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_dedd9f3d7d87b073b0a3bab27de6556e | p2@ENST00000354541 |
| 5.07e-27 | FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_6825167a87574e7566b148b5eefe4340 | p@chr1:17519128..17519138, + |
| 5.07e-27 | FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_6825167a87574e7566b148b5eefe4340 | p@chr1:17519128..17519138, + |
| 1.22e-26 | FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_22cb997ef415e4889579061610892b97 | p5@ATP9B |
| 1.22e-26 | FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_22cb997ef415e4889579061610892b97 | p5@ATP9B |
| 2.01e-25 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_307a9e7f028abc61847ac88863817a7e | p@chr7:98453821..98453843, - |
| 2.01e-25 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_307a9e7f028abc61847ac88863817a7e | p@chr7:98453821..98453843, - |
| 4.31e-25 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_1c2b70b1f44d53a7657a758a92e4c084 | p7@AIF1L |
| 4.31e-25 | FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_1c2b70b1f44d53a7657a758a92e4c084 | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_1c2b70b1f44d53a7657a758a92e4c084 | p7@AIF1L |
| 4.31e-25 | FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_1c2b70b1f44d53a7657a758a92e4c084 | p@chr2:167467988..167467993, - |
| 5.5e-25 | FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_756cd5ed9cef41a7605328e321f152a5 | p@chr2:189157368..189157381, - |
| 5.5e-25 | FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_756cd5ed9cef41a7605328e321f152a5 | p@chr2:189157368..189157381, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_9089b107a6bd1c18742e01ed095c5698 | p@chr9:119741711..119741743, - |
| 7.93e-25 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_9089b107a6bd1c18742e01ed095c5698 | p@chr9:119741711..119741743, - |
| 8.07e-25 | FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_7c568511d01d5921ecb948cc5bb83246 | p8@KLK6 |
| 8.07e-25 | FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_7c568511d01d5921ecb948cc5bb83246 | p8@KLK6 |
| 1.21e-24 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3d5d96ff08727a1ed6ec79b9aee1a83b | p7@HOXA10 |
| 1.21e-24 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3d5d96ff08727a1ed6ec79b9aee1a83b | p7@HOXA10 |
| 1.29e-24 | FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_d9c2f55dfe3aefae37b65cd0e4ee9701 | p@chr20:6034241..6034256, - |
| 1.29e-24 | FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_d9c2f55dfe3aefae37b65cd0e4ee9701 | p@chr20:6034241..6034256, - |
| 7.91e-24 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_3f03d32d84f28eae7f004f0af351b7ec | p2@B3GALT5 |
| 7.91e-24 | FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_3f03d32d84f28eae7f004f0af351b7ec | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_3f03d32d84f28eae7f004f0af351b7ec | p2@B3GALT5 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_3f03d32d84f28eae7f004f0af351b7ec | p3@FXYD2 |
| 9.99e-24 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_c80dbc7a4937a2c4efd22daa803aa85b | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_c80dbc7a4937a2c4efd22daa803aa85b | p3@PAX2 |
| 9.99e-24 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_c80dbc7a4937a2c4efd22daa803aa85b | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_c80dbc7a4937a2c4efd22daa803aa85b | p3@PAX2 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_27203789cb9aab8bf4b5f1648d0c0297 | p@chr12:6484832..6484841, + |
| 3.27e-23 | FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_27203789cb9aab8bf4b5f1648d0c0297 | p@chr12:6484832..6484841, + |
| 3.29e-23 | FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_fb05df539063047ce63bb73d661bc0e6 | p@chr3:43532224..43532252, - |
| 3.29e-23 | FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_fb05df539063047ce63bb73d661bc0e6 | p@chr3:43532224..43532252, - |
