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{{UBERON
{{UBERON
|id=UBERON:0004151
|alt_id=
|name=cardiac chamber
|namespace=
|def="A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
|xref=FMA:7095;;OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw;;SCTID:276456008
|is_a=UBERON:0000064;;UBERON:0004120
|synonym="chamber of heart" EXACT [];;"heart chamber" EXACT []
|comment=generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus
|comment=generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004151
|is_a=UBERON:0000064 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=cardiac chamber
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000948
|part_of=UBERON:0000948
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="chamber of heart" EXACT [];;"heart chamber" EXACT []
|union_of=
|xref=FMA:7095;;OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw;;SCTID:276456008
}}
}}

Latest revision as of 17:44, 12 September 2014

Name:cardiac chamber
Namespace:FANTOM
Definition:"A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
Xrefs:
links:

FMA:7095
OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw

SCTID:276456008
Synonyms: "chamber of heart" EXACT []
"heart chamber" EXACT []
Comments:generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0000948(heart)



Children

is a:UBERON:0002081 (cardiac atrium),UBERON:0002082 (cardiac ventricle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004151 (cardiac chamber), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.16e-117FFCP PHASE1:Hg19::chr2:179585314..179585321,-#_4793eb66e5cf4bacc42acbf7d8da92a3p@chr2:179585314..179585321, -
1.16e-117FFCP PHASE2:Hg19::chr2:179585314..179585321,-#_4793eb66e5cf4bacc42acbf7d8da92a3p@chr2:179585314..179585321, -
9.74e-88FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_f0d704bc4df8cc26e110c25582f31a0ep9@NPPA
9.74e-88FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_f0d704bc4df8cc26e110c25582f31a0ep@chr1:11905799..11905806, -
9.74e-88FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_f0d704bc4df8cc26e110c25582f31a0ep9@NPPA
9.74e-88FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_f0d704bc4df8cc26e110c25582f31a0ep@chr1:11905799..11905806, -
1.52e-87FFCP PHASE2:Hg19::chr1:1154360..1154365,-#_1bce306d93f5549e8031ae42cc01a784p@chr1:1154360..1154365, -
1.52e-87FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_1bce306d93f5549e8031ae42cc01a784p@chr20:55732283..55732288, -
1.52e-87FFCP PHASE1:Hg19::chr1:1154360..1154365,-#_1bce306d93f5549e8031ae42cc01a784p@chr1:1154360..1154365, -
1.52e-87FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_1bce306d93f5549e8031ae42cc01a784p@chr20:55732283..55732288, -
4.06e-85FFCP PHASE1:Hg19::chr1:78408547..78408558,+#_cd351a2f063cbb520d541c4b6a3e035ep@chr1:78408547..78408558, +
4.06e-85FFCP PHASE2:Hg19::chr1:78408547..78408558,+#_cd351a2f063cbb520d541c4b6a3e035ep@chr1:78408547..78408558, +
9.61e-85FFCP PHASE1:Hg19::chr2:179396338..179396348,-#_e6e5615ac83270f81a2bf7c76583c2c2p@chr2:179396338..179396348, -
9.61e-85FFCP PHASE2:Hg19::chr1:11907441..11907453,-#_e6e5615ac83270f81a2bf7c76583c2c2p3@NPPA
9.61e-85FFCP PHASE2:Hg19::chr2:179396338..179396348,-#_e6e5615ac83270f81a2bf7c76583c2c2p@chr2:179396338..179396348, -
9.61e-85FFCP PHASE1:Hg19::chr1:11907441..11907453,-#_e6e5615ac83270f81a2bf7c76583c2c2p3@NPPA
1.28e-84FFCP PHASE2:Hg19::chr1:11907940..11907947,-#_e92fe02bc6e4dd8ff7d8cc496769d057p2@NPPA
1.28e-84FFCP PHASE1:Hg19::chr1:11907940..11907947,-#_e92fe02bc6e4dd8ff7d8cc496769d057p2@NPPA
2.27e-84FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_3f1a8f99905a7e7caa35f6f5a030f51dp@chrX:112324334..112324339, -
2.27e-84FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_3f1a8f99905a7e7caa35f6f5a030f51dp@chrX:112324334..112324339, -
1.29e-74FFCP PHASE2:Hg19::chr20:44035965..44035976,+#_eda2eafd9d55cc70720fd9c44e9adbb3p30@DBNDD2
1.29e-74FFCP PHASE1:Hg19::chr20:44035965..44035976,+#_eda2eafd9d55cc70720fd9c44e9adbb3p30@DBNDD2
1.66e-74FFCP PHASE1:Hg19::chr2:179504505..179504514,-#_8ff53d7190e118e4552ec390df26de53p@chr2:179504505..179504514, -
1.66e-74FFCP PHASE2:Hg19::chr2:179504505..179504514,-#_8ff53d7190e118e4552ec390df26de53p@chr2:179504505..179504514, -
3.54e-74FFCP PHASE1:Hg19::chr3:131523446..131523459,-#_6355d6ee7fc609662e894c66a0cb9f25p@chr3:131523446..131523459, -
3.54e-74FFCP PHASE2:Hg19::chr3:131523446..131523459,-#_6355d6ee7fc609662e894c66a0cb9f25p@chr3:131523446..131523459, -
3.54e-74FFCP PHASE1:Hg19::chr1:201328779..201328797,-#_6355d6ee7fc609662e894c66a0cb9f25p@chr1:201328779..201328797, -
3.54e-74FFCP PHASE2:Hg19::chr1:201328779..201328797,-#_6355d6ee7fc609662e894c66a0cb9f25p@chr1:201328779..201328797, -
5.84e-74FFCP PHASE1:Hg19::chr1:206838422..206838456,+#_158afd2de3a4f7bb378e4186bd8ef764p@chr1:206838422..206838456, +
5.84e-74FFCP PHASE2:Hg19::chr1:206838422..206838456,+#_158afd2de3a4f7bb378e4186bd8ef764p@chr1:206838422..206838456, +
2.04e-73FFCP PHASE1:Hg19::chr3:16940540..16940554,+#_708adbf28481f959c3777ac41f9c932fp@chr3:16940540..16940554, +
2.04e-73FFCP PHASE2:Hg19::chr3:16940540..16940554,+#_708adbf28481f959c3777ac41f9c932fp@chr3:16940540..16940554, +
7.85e-67FFCP PHASE1:Hg19::chr1:201328328..201328343,-#_e9f55e80dc6f02b3f6a69fc8097f5398p@chr1:201328328..201328343, -
7.85e-67FFCP PHASE2:Hg19::chr1:201328328..201328343,-#_e9f55e80dc6f02b3f6a69fc8097f5398p@chr1:201328328..201328343, -
9.82e-67FFCP PHASE2:Hg19::chr2:179399691..179399696,-#_5ff51ccd2b60335f7dcf3269b42dde82p@chr2:179399691..179399696, -
9.82e-67FFCP PHASE1:Hg19::chr2:179399691..179399696,-#_5ff51ccd2b60335f7dcf3269b42dde82p@chr2:179399691..179399696, -
1.92e-66FFCP PHASE1:Hg19::chr7:123302841..123302854,+#_05fa294516d670c9ff5da965ae3fb2afp@chr7:123302841..123302854, +
1.92e-66FFCP PHASE2:Hg19::chr7:123302841..123302854,+#_05fa294516d670c9ff5da965ae3fb2afp@chr7:123302841..123302854, +
2.39e-66FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr17:79385898..79385905, -
2.39e-66FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_c19505a5634f1ba6f4a9d5759b2102b7p10@NPPA
2.39e-66FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr1:43676416..43676417, -
2.39e-66FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr10:92678409..92678410, -
2.39e-66FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_c19505a5634f1ba6f4a9d5759b2102b7p@chr15:86272097..86272099, +
2.39e-66FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_c19505a5634f1ba6f4a9d5759b2102b7p10@NPPA
2.39e-66FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr5:99390735..99390743, -
2.39e-66FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr10:92678409..92678410, -
2.39e-66FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_c19505a5634f1ba6f4a9d5759b2102b7p@chr15:86272097..86272099, +
2.39e-66FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr5:99390735..99390743, -
2.39e-66FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr1:43676416..43676417, -
2.39e-66FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_c19505a5634f1ba6f4a9d5759b2102b7p@chr17:79385898..79385905, -
2.4e-66FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_7dc2f22b532c4bb45a10a1619c13b360p@chr1:11905830..11905839, -
2.4e-66FFCP PHASE1:Hg19::chr5:80555040..80555044,+#_7dc2f22b532c4bb45a10a1619c13b360p@chr5:80555040..80555044, +
2.4e-66FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_7dc2f22b532c4bb45a10a1619c13b360p2@MYL7
2.4e-66FFCP PHASE2:Hg19::chr5:80555040..80555044,+#_7dc2f22b532c4bb45a10a1619c13b360p@chr5:80555040..80555044, +
2.4e-66FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_7dc2f22b532c4bb45a10a1619c13b360p2@MYL7
2.4e-66FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_7dc2f22b532c4bb45a10a1619c13b360p@chr1:11905830..11905839, -
2.4e-66FFCP PHASE1:Hg19::chr12:56091538..56091540,-#_7dc2f22b532c4bb45a10a1619c13b360p@chr12:56091538..56091540, -
2.4e-66FFCP PHASE2:Hg19::chr12:56091538..56091540,-#_7dc2f22b532c4bb45a10a1619c13b360p@chr12:56091538..56091540, -
3.01e-66FFCP PHASE1:Hg19::chr10:127569398..127569410,-#_761ed3a2abd0884dc70ba1d07b74def0p5@DHX32
3.01e-66FFCP PHASE2:Hg19::chr10:127569398..127569410,-#_761ed3a2abd0884dc70ba1d07b74def0p5@DHX32
3.35e-66FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_e6760969cff9bf7efbdc63b3ca1a43c4p@chr12:4735761..4735787, -
3.35e-66FFCP PHASE1:Hg19::chr1:11906020..11906041,+#_e6760969cff9bf7efbdc63b3ca1a43c4p@chr1:11906020..11906041, +
3.35e-66FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_e6760969cff9bf7efbdc63b3ca1a43c4p@chr12:4735761..4735787, -
3.35e-66FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_e6760969cff9bf7efbdc63b3ca1a43c4p3@MYL7
3.35e-66FFCP PHASE2:Hg19::chr1:11906020..11906041,+#_e6760969cff9bf7efbdc63b3ca1a43c4p@chr1:11906020..11906041, +
3.35e-66FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_e6760969cff9bf7efbdc63b3ca1a43c4p3@MYL7
3.35e-66FFCP PHASE1:Hg19::chr14:23854188..23854193,-#_e6760969cff9bf7efbdc63b3ca1a43c4p@chr14:23854188..23854193, -
3.35e-66FFCP PHASE2:Hg19::chr14:23854188..23854193,-#_e6760969cff9bf7efbdc63b3ca1a43c4p@chr14:23854188..23854193, -
3.76e-66FFCP PHASE1:Hg19::chrX:121555838..121555874,+#_4473824453022ac01d87d4903f9e49e4p@chrX:121555838..121555874, +
3.76e-66FFCP PHASE2:Hg19::chrX:121555838..121555874,+#_4473824453022ac01d87d4903f9e49e4p@chrX:121555838..121555874, +
4.68e-66FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_ac73fbb79bbbaeaf4d74d46e4bbf4f78p@chr7:44178491..44178498, -
4.68e-66FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_ac73fbb79bbbaeaf4d74d46e4bbf4f78p@chr7:44178491..44178498, -
5.88e-66FFCP PHASE1:Hg19::chr2:179648899..179648909,-#_ecd9c285b12423fa390356ff14b7fdd5p@chr2:179648899..179648909, -
5.88e-66FFCP PHASE2:Hg19::chr2:179648899..179648909,-#_ecd9c285b12423fa390356ff14b7fdd5p@chr2:179648899..179648909, -
6.53e-66FFCP PHASE2:Hg19::chr11:20070858..20070863,-#_d8a3dc25b55248d21bf6191dae25adc9p5@NAV2-AS2
6.53e-66FFCP PHASE2:Hg19::chr20:32029111..32029122,-#_d8a3dc25b55248d21bf6191dae25adc9p@chr20:32029111..32029122, -
6.53e-66FFCP PHASE2:Hg19::chr2:15679051..15679071,-#_d8a3dc25b55248d21bf6191dae25adc9p@chr2:15679051..15679071, -
6.53e-66FFCP PHASE1:Hg19::chr9:38311053..38311058,+#_d8a3dc25b55248d21bf6191dae25adc9p@chr9:38311053..38311058, +
6.53e-66FFCP PHASE2:Hg19::chr9:38311053..38311058,+#_d8a3dc25b55248d21bf6191dae25adc9p@chr9:38311053..38311058, +
6.53e-66FFCP PHASE1:Hg19::chr2:15679051..15679071,-#_d8a3dc25b55248d21bf6191dae25adc9p@chr2:15679051..15679071, -
6.53e-66FFCP PHASE1:Hg19::chr20:32029111..32029122,-#_d8a3dc25b55248d21bf6191dae25adc9p@chr20:32029111..32029122, -
6.53e-66FFCP PHASE1:Hg19::chr11:20070858..20070863,-#_d8a3dc25b55248d21bf6191dae25adc9p5@NAV2-AS2
6.53e-66FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_d8a3dc25b55248d21bf6191dae25adc9p@chr12:114886577..114886589, -
6.53e-66FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_d8a3dc25b55248d21bf6191dae25adc9p@chr12:114886577..114886589, -
7.35e-66FFCP PHASE2:Hg19::chr6:36812225..36812238,-#_239150bd39b63bb1286c680e0dafd4a7p@chr6:36812225..36812238, -
7.35e-66FFCP PHASE1:Hg19::chr6:36812225..36812238,-#_239150bd39b63bb1286c680e0dafd4a7p@chr6:36812225..36812238, -
1.79e-65FFCP PHASE1:Hg19::chr4:62999501..62999517,+#_ed4a0814db5773f01e0ff470bc6ec4c9p@chr4:62999501..62999517, +
1.79e-65FFCP PHASE2:Hg19::chr4:62999501..62999517,+#_ed4a0814db5773f01e0ff470bc6ec4c9p@chr4:62999501..62999517, +
2.98e-60FFCP PHASE1:Hg19::chr5:79029312..79029328,+#_1f7d65b25ebf4e1e732a434e921befc4p9@CMYA5
2.98e-60FFCP PHASE2:Hg19::chr5:79029312..79029328,+#_1f7d65b25ebf4e1e732a434e921befc4p9@CMYA5
3.65e-60FFCP PHASE1:Hg19::chr1:201328177..201328208,-#_beb98853c82cc88174ec6dc6a040ebc9p@chr1:201328177..201328208, -
3.65e-60FFCP PHASE2:Hg19::chr4:47833348..47833366,+#_beb98853c82cc88174ec6dc6a040ebc9p@chr4:47833348..47833366, +
3.65e-60FFCP PHASE2:Hg19::chr1:201328177..201328208,-#_beb98853c82cc88174ec6dc6a040ebc9p@chr1:201328177..201328208, -
3.65e-60FFCP PHASE1:Hg19::chr4:47833348..47833366,+#_beb98853c82cc88174ec6dc6a040ebc9p@chr4:47833348..47833366, +
4.46e-60FFCP PHASE1:Hg19::chr5:145439648..145439659,+#_df793800a25fb58cfb6d3b15f09521f8p1@FJ695509
4.46e-60FFCP PHASE2:Hg19::chr5:145439648..145439659,+#_df793800a25fb58cfb6d3b15f09521f8p1@FJ695509
4.46e-60FFCP PHASE1:Hg19::chr2:71576703..71576714,+#_df793800a25fb58cfb6d3b15f09521f8p15@ZNF638
4.46e-60FFCP PHASE2:Hg19::chr2:71576703..71576714,+#_df793800a25fb58cfb6d3b15f09521f8p15@ZNF638
6.68e-60FFCP PHASE1:Hg19::chr15:86227895..86227898,+#_a3f6a60c3a87444637d2500dc14803dep54@AKAP13
6.68e-60FFCP PHASE2:Hg19::chr15:86227895..86227898,+#_a3f6a60c3a87444637d2500dc14803dep54@AKAP13

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