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{{UBERON
{{UBERON
|id=UBERON:0005564
|alt_id=
|name=gonad primordium
|namespace=
|def="Portion of tissue that gives rise to the immature gonad." [ZFA:0001262]
|xref=EFO:0003651;;EHDAA:5927;;EMAPA:17204;;RETIRED_EHDAA2:0002148;;TAO:0001262;;WBbt:0008366;;ZFA:0001262
|is_a=UBERON:0000479;;UBERON:0001048;;UBERON:0005156
|synonym="gonadal primordium" EXACT [ZFA:0001262];;"undifferentiated gonad" EXACT [ZFA:0001262]
|comment=Taxon notes: this is a very broad grouping class
|comment=Taxon notes: this is a very broad grouping class
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue that gives rise to the immature gonad." [ZFA:0001262]
|subset=grouping_class;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005564
|is_a=UBERON:0001048
|is_obsolete=
|located_in=
|located_in=
|name=gonad primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000990
|part_of=UBERON:0000990
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO]" xsd:string
|is_obsolete=
|subset=grouping_class;;vertebrate_core
|preceded_by=
|synonym="gonadal primordium" EXACT [ZFA:0001262];;"undifferentiated gonad" EXACT [ZFA:0001262]
|union_of=
|xref=EFO:0003651;;EHDAA:5927;;EMAPA:17204;;RETIRED_EHDAA2:0002148;;TAO:0001262;;WBbt:0008366;;ZFA:0001262
}}
}}

Latest revision as of 17:54, 12 September 2014

Name:gonad primordium
Namespace:FANTOM
Definition:"Portion of tissue that gives rise to the immature gonad." [ZFA:0001262]
Xrefs:
links:

EFO:0003651
EHDAA:5927
EMAPA:17204
RETIRED_EHDAA2:0002148
TAO:0001262
WBbt:0008366

ZFA:0001262
Synonyms: "gonadal primordium" EXACT [ZFA:0001262]
"undifferentiated gonad" EXACT [ZFA:0001262]
Comments:Taxon notes: this is a very broad grouping class
Subset: grouping_class
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0000990(reproductive system)



Children

develops from:UBERON:0000991 (gonad)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005564 (gonad primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.75e-64FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_8d45aaecd16f58e31906a402b61d9121p7@Tulp2
6.75e-64FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_8d45aaecd16f58e31906a402b61d9121p7@Tulp2
1.36e-62FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_99347e7f71f378f5f9ea0ff4712db82dp2@Slc25a31
1.36e-62FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_99347e7f71f378f5f9ea0ff4712db82dp2@Slc25a31
1.69e-62FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_bb3720bff25cdd8728f7b6198baa830dp1@Asz1
1.69e-62FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_bb3720bff25cdd8728f7b6198baa830dp1@Asz1
2.43e-62FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_484e0dd9f2ab1494fb1e97b1685a6d4ep@chr12:31775417..31775434, -
2.43e-62FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_484e0dd9f2ab1494fb1e97b1685a6d4ep@chr12:31775417..31775434, -
6.68e-62FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_315d63ecb1e4177da7612134fe6cac26p6@Folr1
6.68e-62FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_315d63ecb1e4177da7612134fe6cac26p6@Folr1
4.74e-60FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_a8f3e83e1e7782693309d1355bb80dd6p1@Mov10l1
4.74e-60FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_a8f3e83e1e7782693309d1355bb80dd6p1@Mov10l1
1.66e-59FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_cfeb16fba5a0b3943c2b86eee11e259bp1@Sycp1
1.66e-59FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_cfeb16fba5a0b3943c2b86eee11e259bp1@Sycp1
7.89e-59FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_69ef6db13cb134c871eb3c2639f528abp2@Asz1
7.89e-59FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_69ef6db13cb134c871eb3c2639f528abp2@Asz1
4.05e-58FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_de680bc26228c2b124464dc2a8b95d2fp4@STAR
4.05e-58FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_de680bc26228c2b124464dc2a8b95d2fp4@STAR
5.06e-58FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_b8e1b7a0d1129e640ade52ea1b7cbc06p@chr15:102277099..102277126, +
5.06e-58FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_b8e1b7a0d1129e640ade52ea1b7cbc06p@chr15:102277099..102277126, +
5.18e-58FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_0912aa09ddb63f8e6176dca6cab52e30p1@Mael
5.18e-58FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_0912aa09ddb63f8e6176dca6cab52e30p1@Mael
1.46e-57FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_897fa149f5f5f196a23c055aef63220ap3@Cst9
1.46e-57FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_897fa149f5f5f196a23c055aef63220ap3@Cst9
1.46e-57FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_897fa149f5f5f196a23c055aef63220ap22@Rgs3
1.46e-57FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_897fa149f5f5f196a23c055aef63220ap22@Rgs3
1.91e-57FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_6981d4b4c994bf48d264d6c4efb0f9a7p1@Fkbp6
1.91e-57FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_6981d4b4c994bf48d264d6c4efb0f9a7p@chr7:149469129..149469146, +
1.91e-57FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_6981d4b4c994bf48d264d6c4efb0f9a7p1@Fkbp6
1.91e-57FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_6981d4b4c994bf48d264d6c4efb0f9a7p@chr7:149469129..149469146, +
2.3e-57FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_6db4a76c5b57e59f5a5cd72ffa7c6bb5p1@Mir202
2.3e-57FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_6db4a76c5b57e59f5a5cd72ffa7c6bb5p1@Mir202
1.44e-56FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_9b5539e4b4ab440c3ff169cb59f36e0bp1@Hormad1
1.44e-56FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_9b5539e4b4ab440c3ff169cb59f36e0bp1@Hormad1
1.57e-56FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_fc298c2b0385fa1684caea71444a748fp1@Hist1h2aa
1.57e-56FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_fc298c2b0385fa1684caea71444a748fp1@Hist1h2aa
1.84e-56FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_cf687f9e610d337dcfeb2523743e0232p2@KLF17
1.84e-56FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_cf687f9e610d337dcfeb2523743e0232p2@KLF17
1.24e-55FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_664d356069938f29411f5bb2701b8168p1@Piwil2
1.24e-55FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_664d356069938f29411f5bb2701b8168p1@Piwil2
1.82e-55FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_fcd9a6378981872733052d7e819b9aadp1@Tex12
1.82e-55FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_fcd9a6378981872733052d7e819b9aadp1@Tex12
1.99e-55FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_73dabf8db76734b09e1c66e65d517874p1@Cst12
1.99e-55FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_73dabf8db76734b09e1c66e65d517874p1@Cst12
2.92e-55FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_4edb5218dc7bba38f526d63378d808a6p1@Gm949
2.92e-55FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_4edb5218dc7bba38f526d63378d808a6p1@Gm949
1.21e-54FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_1b83600715a550b260db67fa0656cd57p1@Fam178b
1.21e-54FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_1b83600715a550b260db67fa0656cd57p1@Fam178b
2.26e-54FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_790ed3ac1c5295be6ae0e319caf2cee3p1@Dazl
2.26e-54FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_790ed3ac1c5295be6ae0e319caf2cee3p1@Dazl
2.54e-54FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_a165d488730d3bf177e38864f03e6d68p1@Exoc3l2
2.54e-54FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_a165d488730d3bf177e38864f03e6d68p1@Exoc3l2
6.89e-54FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_e0dff54e58867a54531d26715ebd1a6dp1@Tdrd12
6.89e-54FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_e0dff54e58867a54531d26715ebd1a6dp1@Tdrd12
7.61e-54FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_0bb3927b6081522fc4a0dfd6890d7f18p4@Taf9b
7.61e-54FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_0bb3927b6081522fc4a0dfd6890d7f18p4@Taf9b
2.73e-53FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_59c3ebd5e3e8df328ff92c2701db906cp3@Hsd17b3
2.73e-53FFCP PHASE2:Mm9::chr13:64190487..64190500,-#_59c3ebd5e3e8df328ff92c2701db906cp3@Hsd17b3
2.73e-53FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_59c3ebd5e3e8df328ff92c2701db906cp2@Exoc3l2
2.73e-53FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_59c3ebd5e3e8df328ff92c2701db906cp2@Exoc3l2
3.37e-53FFCP PHASE2:Mm9::chr19:25580272..25580305,+#_0653884a0df1b6be97a48235d80b8162p3@Dmrt1
3.37e-53FFCP PHASE1:Mm9::chr19:25580272..25580305,+#_0653884a0df1b6be97a48235d80b8162p3@Dmrt1
4.16e-53FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_40a089f2d6d279ff282a5b058f108254p1@Tktl1
4.16e-53FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_40a089f2d6d279ff282a5b058f108254p1@Tktl1
4.63e-53FFCP PHASE2:Mm9::chr9:50369425..50369436,-#_9a26fbcd570874fe03571efff700d959p3@Tex12
4.63e-53FFCP PHASE1:Mm9::chr9:50369425..50369436,-#_9a26fbcd570874fe03571efff700d959p3@Tex12
6.36e-53FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_0dc156b89b7f75df809d4808cf62ee99p@chr5:26334211..26334241, +
6.36e-53FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_0dc156b89b7f75df809d4808cf62ee99p@chr5:26334211..26334241, +
8.31e-53FFCP PHASE1:Mm9::chr5:135825912..135825919,-#_f31808c09c46dcd6e9c86ac2ab842a03p2@Fkbp6
8.31e-53FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_f31808c09c46dcd6e9c86ac2ab842a03p1@Sohlh1
8.31e-53FFCP PHASE2:Mm9::chr5:135825912..135825919,-#_f31808c09c46dcd6e9c86ac2ab842a03p2@Fkbp6
8.31e-53FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr11:69431224..69431241, -
8.31e-53FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr8:26314366..26314395, -
8.31e-53FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr16:37843615..37843636, -
8.31e-53FFCP PHASE1:Mm9::chr7:104599810..104599819,+#_f31808c09c46dcd6e9c86ac2ab842a03p3@Kctd14
8.31e-53FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_f31808c09c46dcd6e9c86ac2ab842a03p1@Sohlh1
8.31e-53FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr16:37843615..37843636, -
8.31e-53FFCP PHASE2:Mm9::chr7:104599810..104599819,+#_f31808c09c46dcd6e9c86ac2ab842a03p3@Kctd14
8.31e-53FFCP PHASE2:Mm9::chr14:63940369..63940380,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr14:63940369..63940380, -
8.31e-53FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chrX:93160409..93160432, -
8.31e-53FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr11:69431224..69431241, -
8.31e-53FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr8:26314366..26314395, -
8.31e-53FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chrX:93160409..93160432, -
8.31e-53FFCP PHASE1:Mm9::chr14:63940369..63940380,-#_f31808c09c46dcd6e9c86ac2ab842a03p@chr14:63940369..63940380, -
8.63e-53FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_bf33b0310e3357c3349a553986462e26p5@Gstm6
8.63e-53FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_bf33b0310e3357c3349a553986462e26p5@Gstm6
1.03e-52FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_445e3db5463a6c3095e8bdf044b835a8p2@Kctd14
1.03e-52FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_445e3db5463a6c3095e8bdf044b835a8p2@Kctd14
1.84e-52FFCP PHASE2:Mm9::chr7:52741649..52741686,+#_e3193f4204d8aeadfcadb1b135ecc3ebp3@Tulp2
1.84e-52FFCP PHASE1:Mm9::chr7:52741649..52741686,+#_e3193f4204d8aeadfcadb1b135ecc3ebp3@Tulp2
2.15e-52FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_86a9fee7bf02535cb5cdb35804633323p3@Fkbp5
2.15e-52FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_86a9fee7bf02535cb5cdb35804633323p3@Fkbp5
4.88e-52FFCP PHASE2:Mm9::chr6:120726529..120726551,+#_439359a3935b3dbc2884a36d6a8dbeadp@chr6:120726529..120726551, +
4.88e-52FFCP PHASE1:Mm9::chr6:120726529..120726551,+#_439359a3935b3dbc2884a36d6a8dbeadp@chr6:120726529..120726551, +
1.03e-51FFCP PHASE2:Mm9::chr1:182312504..182312531,+#_df9ff6b508aa4b5ea6652d6461401fcdp@chr1:182312504..182312531, +
1.03e-51FFCP PHASE1:Mm9::chr1:182312504..182312531,+#_df9ff6b508aa4b5ea6652d6461401fcdp@chr1:182312504..182312531, +
1.67e-51FFCP PHASE1:Mm9::chrX:98989738..98989756,-#_3c65c6958429da0d3833caad3509da65p@chrX:98989738..98989756, -
1.67e-51FFCP PHASE2:Mm9::chrX:98989738..98989756,-#_3c65c6958429da0d3833caad3509da65p@chrX:98989738..98989756, -
7.03e-51FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_2102572fa91a7882737c40288d4ad910p1@Ccdc152
7.03e-51FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_2102572fa91a7882737c40288d4ad910p1@Ccdc152










Property "Property value" (as page type) with input value "UBPROP:0000001 "Immature reproductive tissue that has not undergone final maturation into either testis or ovary.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005564&oldid=3277788"