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{{UBERON
{{UBERON
|id=UBERON:0009494
|alt_id=
|name=pharyngeal arch mesenchymal region
|namespace=
|def="A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
|xref=
|is_a=UBERON:0005291;;UBERON:0007524
|synonym="branchial arch mesenchyme" EXACT [MP:0011262];;"pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
|comment=Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]
|comment=Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009494
|is_a=UBERON:0004119 ;;UBERON:0005253 ;;UBERON:0007524 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=pharyngeal arch mesenchymal region
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002539;;UBERON:0010046
|part_of=UBERON:0002539;;UBERON:0010046
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="branchial arch mesenchyme" EXACT [MP:0011262];;"pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
|union_of=
|xref=
}}
}}

Latest revision as of 18:05, 12 September 2014

Name:pharyngeal arch mesenchymal region
Namespace:FANTOM
Definition:"A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
Synonyms: "branchial arch mesenchyme" EXACT [MP:0011262]
"pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
Comments:Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005253(head mesenchyme),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002539(pharyngeal arch),UBERON:0010046(entire pharyngeal arch associated mesenchyme)



Children

is a:UBERON:0010042 (1st arch mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009494 (pharyngeal arch mesenchymal region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_620a136ddaeb98de45c8634a1f2768acp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_620a136ddaeb98de45c8634a1f2768acp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_1a33975f97cbfda11c7eb2e1f1a0cb3dp@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_28032f9bed98a384aed84bc9fcf5dcb9p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_28032f9bed98a384aed84bc9fcf5dcb9p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_28032f9bed98a384aed84bc9fcf5dcb9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_28032f9bed98a384aed84bc9fcf5dcb9p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_df202582fd3c3fc34e0f4ec84247c798p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_df202582fd3c3fc34e0f4ec84247c798p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_766d6d0f1d343f982dc2df8a98752b36p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_766d6d0f1d343f982dc2df8a98752b36p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_766d6d0f1d343f982dc2df8a98752b36p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_766d6d0f1d343f982dc2df8a98752b36p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_766d6d0f1d343f982dc2df8a98752b36p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_766d6d0f1d343f982dc2df8a98752b36p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_0400a17246dcfc99d2069283a7d34498p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_0400a17246dcfc99d2069283a7d34498p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_a04bc0a271cdb319618788f324974561p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_a04bc0a271cdb319618788f324974561p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_a04bc0a271cdb319618788f324974561p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_a04bc0a271cdb319618788f324974561p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_a04bc0a271cdb319618788f324974561p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_a04bc0a271cdb319618788f324974561p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_427b7e1627c453d4381c6907dbc074c5p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_427b7e1627c453d4381c6907dbc074c5p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_427b7e1627c453d4381c6907dbc074c5p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_427b7e1627c453d4381c6907dbc074c5p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_0a3c841c34153ddd39cebc3be1e6ef34p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_e706dbebead4f7ba9408e34d15997559p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_e706dbebead4f7ba9408e34d15997559p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_e706dbebead4f7ba9408e34d15997559p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_e706dbebead4f7ba9408e34d15997559p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_e706dbebead4f7ba9408e34d15997559p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_e706dbebead4f7ba9408e34d15997559p8@LHX8
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_3948b33cc6e1e7be0c064853895829cfp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_3948b33cc6e1e7be0c064853895829cfp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_3948b33cc6e1e7be0c064853895829cfp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_3948b33cc6e1e7be0c064853895829cfp@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_a3424243a1725d22ac7431f12ab261b8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_a3424243a1725d22ac7431f12ab261b8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_a3424243a1725d22ac7431f12ab261b8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_a3424243a1725d22ac7431f12ab261b8p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_2b930db954572e669553f7d51c625447p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_2b930db954572e669553f7d51c625447p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_2b930db954572e669553f7d51c625447p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_2b930db954572e669553f7d51c625447p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_2b930db954572e669553f7d51c625447p5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_2b930db954572e669553f7d51c625447p4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_d97565b678e6ee4ddbd4dfcad488a110p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_d97565b678e6ee4ddbd4dfcad488a110p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_4363aede665d9a198a28ffef8b6202b8p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_4363aede665d9a198a28ffef8b6202b8p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_69f5ab9cf05e59e4b1da23fb78e264dep@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_69f5ab9cf05e59e4b1da23fb78e264dep@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_69f5ab9cf05e59e4b1da23fb78e264dep@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_69f5ab9cf05e59e4b1da23fb78e264dep@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_25f9b4ebd4888971837ce54296353401p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_25f9b4ebd4888971837ce54296353401p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_25f9b4ebd4888971837ce54296353401p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_25f9b4ebd4888971837ce54296353401p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_25f9b4ebd4888971837ce54296353401p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_25f9b4ebd4888971837ce54296353401p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_43b1d492e7a2ab02121b534cdfb85e28p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_11f08bbbeb19188b5e8ffb267cb23760p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_11f08bbbeb19188b5e8ffb267cb23760p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_11f08bbbeb19188b5e8ffb267cb23760p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_11f08bbbeb19188b5e8ffb267cb23760p7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_1d0985765e1200ac5396954338f0d5ccp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_1d0985765e1200ac5396954338f0d5ccp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_1d0985765e1200ac5396954338f0d5ccp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_1d0985765e1200ac5396954338f0d5ccp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_1d0985765e1200ac5396954338f0d5ccp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_1d0985765e1200ac5396954338f0d5ccp@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_391141a5c4f8da8210624d48757abbd2p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_391141a5c4f8da8210624d48757abbd2p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_81942027b5ffff582a887355e509bb30p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_81942027b5ffff582a887355e509bb30p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_81942027b5ffff582a887355e509bb30p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_81942027b5ffff582a887355e509bb30p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_81942027b5ffff582a887355e509bb30p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_81942027b5ffff582a887355e509bb30p@chr8:57359975..57359992, -
4.2e-29FFCP PHASE2:Hg19::chr15:52606315..52606320,-#_200e1f738dfcc9399ab0b4740c16077ap@chr15:52606315..52606320, -
4.2e-29FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_200e1f738dfcc9399ab0b4740c16077ap@chr10:28033565..28033575, -

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