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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0006598,UBERON:0003886,UBERON:0004176,UBERON:0002532,UBERON:0002119,UBERON:0003100,UBERON:0000474,UBERON:0004531,UBERON:0009196,UBERON:0009117,UBERON:0006603,UBERON:0005564
|DRA_sample_Accession=CAGE@SAMD00005216
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255
|accession_numbers=CAGE;DRX008557;DRR009429;DRZ000854;DRZ002239;DRZ012204;DRZ013589
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002119,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000273
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.76!56.05!PAX8;;chr8:55370487..55370503,+!p1@SOX17!1.49!29.66!SOX17;;chr20:50179368..50179392,-!p2@NFATC2!1.33!26.08!NFATC2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!19.72!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.31!40.99!C11orf9;;chr21:36260773..36260804,-!p7@RUNX1!1.30!25.62!RUNX1;;chr15:83953397..83953425,-!p1@BNC1!1.27!20.03!BNC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!76.70!CREB3L1;;chr12:26277817..26277863,-!p2@BHLHE41!1.19!19.56!BHLHE41;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.35!GATA4;;chr19:42636586..42636607,-!p1@POU2F2!1.13!34.47!POU2F2;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.28!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.11!31.21!ZFPM2;;chr17:1959369..1959388,+!p2@HIC1!1.04!26.86!HIC1;;chr8:72756267..72756296,-!p4@MSC!1.04!14.59!MSC;;chr10:64576105..64576133,-!p1@EGR2!1.03!20.18!EGR2;;chr6:134210243..134210257,+!p1@TCF21!1.03!9.78!TCF21;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.01!9.32!HOXC5;;chr2:102091566..102091581,-!p1@RFX8!1.01!9.16!RFX8;;chr19:45971246..45971265,+!p1@FOSB!1.00!169.86!FOSB;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.08!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.96!26.08!GATA6;;chr11:32457075..32457095,-!p1@WT1!0.96!8.07!WT1;;chr1:170632115..170632136,+!p9@PRRX1!0.95!7.92!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.58!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.94!7.76!PRRX1;;chr11:120107344..120107351,+!p1@POU2F3!0.92!8.85!POU2F3;;chr17:1958388..1958404,+!p1@HIC1!0.91!47.67!HIC1;;chr3:141087393..141087426,+!p3@ZBTB38!0.91!29.81!ZBTB38;;chr1:170633348..170633399,+!p2@PRRX1!0.90!9.63!PRRX1;;chr8:72756637..72756664,-!p3@MSC!0.90!7.92!MSC;;chr9:16705069..16705086,-!p3@BNC2!0.90!6.99!BNC2;;chr12:26277956..26277980,-!p1@BHLHE41!0.89!25.31!BHLHE41;;chr3:141087454..141087465,+!p19@ZBTB38!0.88!6.52!ZBTB38;;chr2:239756739..239756755,+!p2@TWIST2!0.87!11.18!TWIST2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.14!PRRX1;;chr3:25470156..25470227,+!p2@RARB!0.86!6.21!RARB;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.70!OSR1;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.11!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.85!10.56!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.63!HOXB2;;chr7:1577899..1577943,+!p3@MAFK!0.85!6.06!MAFK;;chr12:66218212..66218244,+!p5@HMGA2!0.84!8.85!HMGA2;;chr12:26277929..26277955,-!p3@BHLHE41!0.84!8.54!BHLHE41;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.74!HIF3A;;chr1:151032860..151032918,+!p1@MLLT11!0.82!71.89!MLLT11;;chr8:72756667..72756736,-!p2@MSC!0.81!8.85!MSC;;chr7:26191809..26191890,+!p1@NFE2L3!0.80!28.26!NFE2L3;;chr8:72756063..72756125,-!p1@MSC!0.80!11.33!MSC;;chr7:27183263..27183284,-!p2@HOXA5!0.80!5.28!HOXA5;;chr9:127269661..127269719,-!p1@NR5A1!0.80!5.28!NR5A1;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.12!FOXL2;;chr17:46132044..46132080,+!p4@NFE2L1!0.79!5.12!NFE2L1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.38!ZC3H12A;;chr17:46622070..46622109,-!p1@HOXB2!0.78!11.96!HOXB2;;chr8:106330696..106330719,+!p2@ZFPM2!0.78!6.52!ZFPM2;;chr12:54394309..54394336,+!p2@HOXC9!0.78!4.97!HOXC9;;chr17:45928521..45928539,-!p1@SP6!0.78!4.97!SP6;;chr15:96869114..96869160,+!p11@NR2F2!0.77!6.83!NR2F2;;chr7:44143925..44143970,+!p1@AEBP1!0.76!116.29!AEBP1;;chr8:49833948..49833973,-!p2@SNAI2!0.76!32.92!SNAI2;;chr18:19749386..19749404,+!p2@GATA6!0.76!6.99!GATA6;;chr2:239756671..239756732,+!p1@TWIST2!0.75!15.99!TWIST2;;chr1:170632051..170632081,+!p16@PRRX1!0.74!4.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.74!4.50!PRRX1;;chr3:25469815..25469866,+!p3@RARB!0.73!4.35!RARB;;chr17:45928443..45928473,-!p2@SP6!0.73!4.35!SP6;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.75!SNAI2;;chr12:115121962..115121987,-!p1@TBX3!0.72!39.90!TBX3;;chr2:66662281..66662308,+!p1@MEIS1!0.72!16.30!MEIS1;;chr16:86544113..86544145,+!p1@FOXF1!0.72!5.43!FOXF1;;chr7:27183291..27183324,-!p1@HOXA5!0.72!4.19!HOXA5;;chr8:72756213..72756243,-!p5@MSC!0.71!5.59!MSC;;chr2:121493425..121493474,+!p1@GLI2!0.70!9.63!GLI2;;chr6:45296048..45296082,+!p1@RUNX2!0.70!4.66!RUNX2;;chr1:170632250..170632277,+!p7@PRRX1!0.70!4.04!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!0.70!4.04!HOXC8;;chr12:54447637..54447659,+!p4@HOXC4!0.70!4.04!HOXC4;;chr10:94449703..94449718,+!p1@HHEX!0.69!17.08!HHEX;;chr1:151032922..151032951,+!p2@MLLT11!0.69!6.99!MLLT11;;chr1:170632959..170632987,+!p4@PRRX1!0.69!4.35!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!0.69!3.88!PKNOX2;;chr1:59249688..59249703,-!p3@JUN!0.68!25.62!JUN;;chr15:96874927..96874938,+!p8@NR2F2!0.68!8.85!NR2F2;;chr3:141121847..141121868,+!p5@ZBTB38!0.68!6.06!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!0.68!4.50!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!0.67!3.73!HAND2;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.73!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.39!DRAP1;;chr1:151032782..151032801,+!p4@MLLT11!0.66!7.92!MLLT11;;chr2:102091144..102091183,-!p2@RFX8!0.66!3.57!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!0.66!3.57!HOXD8;;chr12:66218836..66218888,+!p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;chr10:119302232..119302265,+!p1@EMX2!0.17!0.47!EMX2;;chr10:119302508..119302559,+!p5@EMX2!0.17!0.47!EMX2;;chr10:135121763..135121783,+!p5@ZNF511!0.17!0.47!ZNF511;;chr10:28032421..28032494,-!p2@MKX!0.17!0.47!MKX;;chr10:35416172..35416184,+!p13@CREM!0.17!0.47!CREM;;chr10:45495946..45495976,+!p2@ZNF22!0.17!0.47!ZNF22;;chr11:16627528..16627550,-!p7@SOX6!0.17!0.47!SOX6;;chr11:19262461..19262476,-!p5@E2F8!0.17!0.47!E2F8;;chr11:32457185..32457193,-!p7@WT1!0.17!0.47!WT1;;chr11:34642612..34642646,+!p1@EHF!0.17!0.47!EHF;;chr11:65430617..65430624,-!p8@RELA!0.17!0.47!RELA;;chr11:65480222..65480241,+!p4@KAT5!0.17!0.47!KAT5;;chr11:85393886..85393913,-!p3@CREBZF!0.17!0.47!CREBZF;;chr12:115122297..115122302,-!p15@TBX3!0.17!0.47!TBX3;;chr12:12794994..12795024,+!p5@CREBL2!0.17!0.47!CREBL2;;chr12:54378923..54378966,+!p1@HOXC10!0.17!0.47!HOXC10;;chr12:57853596..57853613,+!p3@GLI1!0.17!0.47!GLI1;;chr12:72056897..72056908,+!p12@THAP2!0.17!0.47!THAP2;;chr12:80084120..80084136,-!p15@PAWR!0.17!0.47!PAWR;;chr13:37494306..37494324,-!p4@SMAD9!0.17!0.47!SMAD9;;chr13:46543936..46543949,-!p19@ZC3H13!0.17!0.47!ZC3H13;;chr19:45254481..45254495,+!p13@BCL3!0.17!0.47!BCL3;;chr19:54024313..54024361,+!p7@ZNF331!0.17!0.47!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!0.17!0.47!ZNF331;;chr1:114301553..114301576,-!p6@PHTF1!0.17!0.47!PHTF1;;chr1:151032957..151032968,+!p7@MLLT11!0.17!0.47!MLLT11;;chr1:158985686..158985719,+!p15@IFI16!0.17!0.47!IFI16;;chr1:170632325..170632339,+!p24@PRRX1!0.17!0.47!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.17!0.47!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.17!0.47!PRRX1;;chr1:212873162..212873188,-!p3@BATF3!0.17!0.47!BATF3;;chr1:221053444..221053473,+!p8@HLX!0.17!0.47!HLX;;chr1:8763282..8763291,-!p32@RERE!0.17!0.47!RERE;;chr20:55205791..55205817,+!p3@TFAP2C!0.17!0.47!TFAP2C;;chr20:61051039..61051057,-!p1@GATA5!0.17!0.47!GATA5;;chr21:38071403..38071428,+!p2@SIM2!0.17!0.47!SIM2;;chr5:121465294..121465301,+!p4@ZNF474!0.17!0.47!ZNF474;;chr6:152011695..152011709,+!p6@ESR1!0.17!0.47!ESR1;;chr6:15245752..15245767,+!p14@JARID2!0.17!0.47!JARID2;;chr6:1612300..1612324,+!p3@FOXC1!0.17!0.47!FOXC1;;chr6:21597687..21597708,+!p14@SOX4!0.17!0.47!SOX4;;chr6:27356595..27356611,+!p6@ZNF391!0.17!0.47!ZNF391;;chr6:28321811..28321824,-!p8@ZNF323!0.17!0.47!ZNF323;;chr6:45389893..45389902,+!p21@RUNX2!0.17!0.47!RUNX2;;chr7:14029034..14029087,-!p5@ETV1!0.17!0.47!ETV1;;chr7:150102756..150102772,+!p5@ZNF775!0.17!0.47!ZNF775;;chr7:1577076..1577095,+!p5@MAFK!0.17!0.47!MAFK;;chr7:1577952..1577963,+!p8@MAFK!0.17!0.47!MAFK;;chr7:27153590..27153608,-!p7@HOXA3!0.17!0.47!HOXA3;;chr7:27195867..27195893,-!p3@HOXA7!0.17!0.47!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.17!0.47!HOXA10;;chr8:103668114..103668134,-!p5@KLF10!0.17!0.47!KLF10;;chr8:30890810..30890880,-!p1@PURG!0.17!0.47!PURG;;chr8:55370884..55370896,+!p5@SOX17!0.17!0.47!SOX17;;chr15:31658288..31658338,+!p4@KLF13!0.17!0.47!KLF13;;chr15:57025732..57025743,-!p6@ZNF280D!0.17!0.47!ZNF280D;;chr15:57511589..57511608,+!p4@TCF12!0.17!0.47!TCF12;;chr15:61521462..61521482,-!p4@RORA!0.17!0.47!RORA;;chr15:67430381..67430396,+!p21@SMAD3!0.17!0.47!SMAD3;;chr15:96869394..96869405,+!p25@NR2F2!0.17!0.47!NR2F2;;chr16:30406423..30406447,+!p4@ZNF48!0.17!0.47!ZNF48;;chr16:51185318..51185348,-!p2@SALL1!0.17!0.47!SALL1;;chr16:67881647..67881663,-!p3@CENPT!0.17!0.47!CENPT;;chr16:69419590..69419601,-!p5@TERF2!0.17!0.47!TERF2;;chr17:17740823..17740833,-!p8@SREBF1!0.17!0.47!SREBF1;;chr17:3571934..3571935,-!p3@TAX1BP3!0.17!0.47!TAX1BP3;;chr17:41277334..41277348,-!p6@BRCA1!0.17!0.47!BRCA1;;chr17:41622901..41622913,-!p16@ETV4!0.17!0.47!ETV4;;chr17:46655578..46655589,-!p4@HOXB4!0.17!0.47!HOXB4;;chr17:46675344..46675355,-!p9@HOXB6!0.17!0.47!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.17!0.47!HOXB7;;chr17:7382810..7382822,-!p12@ZBTB4!0.17!0.47!ZBTB4;;chr18:19751305..19751324,+!p9@GATA6!0.17!0.47!GATA6;;chr18:45935720..45935772,-!p1@ZBTB7C!0.17!0.47!ZBTB7C;;chr18:52894476..52894484,-!p41@TCF4!0.17!0.47!TCF4;;chr18:52988952..52988965,-!p23@TCF4!0.17!0.47!TCF4;;chr18:53089453..53089482,-!p11@TCF4!0.17!0.47!TCF4;;chr18:53255379..53255382,-!p45@TCF4!0.17!0.47!TCF4;;chr19:12267577..12267593,-!p3@ZNF625!0.17!0.47!ZNF625;;chr19:13135582..13135600,+!p3@NFIX!0.17!0.47!NFIX;;chr19:1622138..1622153,-!p7@TCF3!0.17!0.47!TCF3;;chr19:1863437..1863446,-!p5@KLF16!0.17!0.47!KLF16;;chrX:66763914..66763933,+!p3@AR!0.17!0.47!AR;;chr9:130966497..130966541,-!p4@CIZ1!0.17!0.47!CIZ1;;chr8:37553292..37553317,+!p1@ZNF703!0.16!30.28!ZNF703;;chr4:103422499..103422632,+!p1@NFKB1!0.16!26.86!NFKB1;;chr12:77459306..77459365,-!p1@E2F7!0.16!15.68!E2F7;;chr16:29817617..29817664,+!p4@MAZ!0.16!13.20!MAZ;;chr2:42795745..42795824,+!p1@MTA3!0.16!11.33!MTA3;;chr10:21823128..21823216,+!p1@MLLT10!0.16!11.18!MLLT10;;chr18:72265084..72265143,+!p1@ZNF407!0.16!9.16!ZNF407;;chr19:1592714..1592762,-!p1@MBD3!0.16!9.16!MBD3;;chr3:71179699..71179744,-!p2@FOXP1!0.16!9.16!FOXP1;;chr11:65479702..65479731,+!p1@KAT5!0.16!7.61!KAT5;;chr10:104154246..104154347,+!p3@NFKB2!0.16!7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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
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Line 43: Line 60:
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Line 58: Line 78:
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|sample_cell_line=
Line 79: Line 100:
|top_motifs=HSF1,2:1.71757376762;NKX3-1:1.69233020144;TAL1_TCF{3,4,12}:1.48727960559;HBP1_HMGB_SSRP1_UBTF:1.18496528004;SRF:1.16619287965;ALX4:1.1647912356;ZNF238:1.15951868447;GZF1:1.15237947499;HIF1A:1.14587292974;TEF:1.12859168147;CDC5L:0.975559385393;ZNF384:0.952785496494;HOX{A5,B5}:0.941997575631;PAX8:0.93187770944;EN1,2:0.904140985288;NFATC1..3:0.898073174627;TLX2:0.882019138491;CRX:0.866334155035;PAX4:0.846486426058;MYBL2:0.783031005036;TEAD1:0.77606773588;NFIX:0.764317284392;IKZF1:0.732938168419;XCPE1{core}:0.719074571338;TLX1..3_NFIC{dimer}:0.705119085993;POU3F1..4:0.693194737774;ATF6:0.660194746968;UFEwm:0.656228395233;ONECUT1,2:0.654439715765;TBP:0.634856587489;NFE2L2:0.634289412675;PRDM1:0.625966736823;GLI1..3:0.615541309368;GTF2A1,2:0.611724320662;AIRE:0.609756941075;EVI1:0.587805145019;NKX2-2,8:0.562927156582;TFCP2:0.546807733477;MZF1:0.53725897708;HMGA1,2:0.532868475359;RFX1:0.523753896649;GTF2I:0.513206902337;DBP:0.509291402064;FOX{I1,J2}:0.467406972913;SMAD1..7,9:0.464508880014;PAX1,9:0.464083842535;BACH2:0.456221169048;ALX1:0.434104241478;TBX4,5:0.428313560518;TP53:0.417376491217;HLF:0.411154564826;NANOG{mouse}:0.409713069356;POU6F1:0.405353078379;FOS_FOS{B,L1}_JUN{B,D}:0.402474712108;EBF1:0.401626141221;MAZ:0.398594925819;GFI1B:0.396456490567;AHR_ARNT_ARNT2:0.3921272907;HOX{A4,D4}:0.374363576451;ELK1,4_GABP{A,B1}:0.370316692775;ZIC1..3:0.369030735635;POU5F1:0.352289186895;NKX2-1,4:0.344278695622;SOX17:0.33546377283;ZBTB6:0.313628585133;KLF4:0.306307900084;LEF1_TCF7_TCF7L1,2:0.291490079213;POU2F1..3:0.280018586662;AR:0.278117207593;RXR{A,B,G}:0.268121832141;SPZ1:0.264765443853;XBP1:0.247292387992;FOXM1:0.229336767018;MTE{core}:0.22617557603;JUN:0.221888136084;RXRA_VDR{dimer}:0.215221965977;RUNX1..3:0.205387623152;PAX3,7:0.20261122189;NR3C1:0.198500023098;PPARG:0.196250066755;EGR1..3:0.195788989416;NR6A1:0.171725472659;NFE2:0.163165483709;PATZ1:0.159758277102;NKX3-2:0.158112327851;ATF2:0.157685128847;TFDP1:0.151730674602;ARID5B:0.150338600775;MAFB:0.139438621066;TFAP2B:0.130881814375;ZNF148:0.0905953409919;HNF1A:0.0887202117125;NFE2L1:0.088090504979;NHLH1,2:0.0802073512877;TFAP2{A,C}:0.0745149903449;GCM1,2:0.0735684751212;NFKB1_REL_RELA:0.0691797499046;GFI1:0.0681303758913;FOSL2:0.0674407733795;HIC1:0.0665126063176;ZBTB16:0.0513594275154;NKX6-1,2:0.0307804276935;PAX5:0.0241705359388;PAX2:0.0144914689293;HOXA9_MEIS1:0.00877907091124;SOX2:0.00462560441695;E2F1..5:-0.00161066407798;ZNF143:-0.0058889410447;HES1:-0.00624036099148;STAT1,3:-0.016281670644;PBX1:-0.0167109100804;ELF1,2,4:-0.0170826381505;ZFP161:-0.0203576078915;MED-1{core}:-0.0285779382802;LHX3,4:-0.0323642457473;GATA4:-0.0349696874127;SP1:-0.0431293998396;NRF1:-0.0432752856424;IRF1,2:-0.0610023029757;MYFfamily:-0.0715604942396;CDX1,2,4:-0.0768140220827;NFIL3:-0.0903378791549;ESR1:-0.0950076496527;PRRX1,2:-0.118851806213;SOX{8,9,10}:-0.139790743492;CREB1:-0.142192866659;RREB1:-0.146704022625;TFAP4:-0.148636538104;MTF1:-0.155749447923;EP300:-0.175910702036;STAT2,4,6:-0.176306550359;FOXL1:-0.17696940316;GATA6:-0.190220786555;STAT5{A,B}:-0.193202622047;FOXQ1:-0.193623998916;HMX1:-0.19502344928;REST:-0.202957870472;MEF2{A,B,C,D}:-0.2081592777;SOX5:-0.208339016416;POU1F1:-0.20865787857;DMAP1_NCOR{1,2}_SMARC:-0.20887731986;ADNP_IRX_SIX_ZHX:-0.212010882243;HAND1,2:-0.222360084265;HNF4A_NR2F1,2:-0.230563825235;NFY{A,B,C}:-0.234403195011;ETS1,2:-0.247154466774;MYB:-0.283805141675;IRF7:-0.302488483557;FOXN1:-0.305361778221;ATF5_CREB3:-0.345320886733;ZNF423:-0.356431010111;FOXD3:-0.361773376716;SPI1:-0.370722087557;YY1:-0.372039074751;CEBPA,B_DDIT3:-0.383261634721;OCT4_SOX2{dimer}:-0.387698756736;bHLH_family:-0.393797567738;PAX6:-0.40183064737;RFX2..5_RFXANK_RFXAP:-0.415738808287;TOPORS:-0.421432423366;SREBF1,2:-0.429029296638;BPTF:-0.448311920784;FOXP3:-0.490644811872;ATF4:-0.50079050347;NR1H4:-0.511577696899;SPIB:-0.540042844867;FOXP1:-0.544426153512;FOXA2:-0.549078917335;IKZF2:-0.568261815288;ZEB1:-0.581374489536;FOXO1,3,4:-0.5878086759;NR5A1,2:-0.598894130885;FOX{D1,D2}:-0.613355993979;LMO2:-0.647360133663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.6739042192;TGIF1:-0.675301279653;NKX2-3_NKX2-5:-0.677299467238;BREu{core}:-0.687374754382;CUX2:-0.72885832234;SNAI1..3:-0.733682910347;RBPJ:-0.755478833353;NANOG:-0.772804320728;RORA:-0.799164724683;PITX1..3:-0.863673501573;MYOD1:-0.883200015426;ESRRA:-0.915600263994;T:-0.947145784093;VSX1,2:-0.949980474846;HOX{A6,A7,B6,B7}:-0.996231477996;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.04780851997;FOX{F1,F2,J1}:-1.14215579708;PDX1:-1.33493430522
|top_motifs=HSF1,2:1.71757376762;NKX3-1:1.69233020144;TAL1_TCF{3,4,12}:1.48727960559;HBP1_HMGB_SSRP1_UBTF:1.18496528004;SRF:1.16619287965;ALX4:1.1647912356;ZNF238:1.15951868447;GZF1:1.15237947499;HIF1A:1.14587292974;TEF:1.12859168147;CDC5L:0.975559385393;ZNF384:0.952785496494;HOX{A5,B5}:0.941997575631;PAX8:0.93187770944;EN1,2:0.904140985288;NFATC1..3:0.898073174627;TLX2:0.882019138491;CRX:0.866334155035;PAX4:0.846486426058;MYBL2:0.783031005036;TEAD1:0.77606773588;NFIX:0.764317284392;IKZF1:0.732938168419;XCPE1{core}:0.719074571338;TLX1..3_NFIC{dimer}:0.705119085993;POU3F1..4:0.693194737774;ATF6:0.660194746968;UFEwm:0.656228395233;ONECUT1,2:0.654439715765;TBP:0.634856587489;NFE2L2:0.634289412675;PRDM1:0.625966736823;GLI1..3:0.615541309368;GTF2A1,2:0.611724320662;AIRE:0.609756941075;EVI1:0.587805145019;NKX2-2,8:0.562927156582;TFCP2:0.546807733477;MZF1:0.53725897708;HMGA1,2:0.532868475359;RFX1:0.523753896649;GTF2I:0.513206902337;DBP:0.509291402064;FOX{I1,J2}:0.467406972913;SMAD1..7,9:0.464508880014;PAX1,9:0.464083842535;BACH2:0.456221169048;ALX1:0.434104241478;TBX4,5:0.428313560518;TP53:0.417376491217;HLF:0.411154564826;NANOG{mouse}:0.409713069356;POU6F1:0.405353078379;FOS_FOS{B,L1}_JUN{B,D}:0.402474712108;EBF1:0.401626141221;MAZ:0.398594925819;GFI1B:0.396456490567;AHR_ARNT_ARNT2:0.3921272907;HOX{A4,D4}:0.374363576451;ELK1,4_GABP{A,B1}:0.370316692775;ZIC1..3:0.369030735635;POU5F1:0.352289186895;NKX2-1,4:0.344278695622;SOX17:0.33546377283;ZBTB6:0.313628585133;KLF4:0.306307900084;LEF1_TCF7_TCF7L1,2:0.291490079213;POU2F1..3:0.280018586662;AR:0.278117207593;RXR{A,B,G}:0.268121832141;SPZ1:0.264765443853;XBP1:0.247292387992;FOXM1:0.229336767018;MTE{core}:0.22617557603;JUN:0.221888136084;RXRA_VDR{dimer}:0.215221965977;RUNX1..3:0.205387623152;PAX3,7:0.20261122189;NR3C1:0.198500023098;PPARG:0.196250066755;EGR1..3:0.195788989416;NR6A1:0.171725472659;NFE2:0.163165483709;PATZ1:0.159758277102;NKX3-2:0.158112327851;ATF2:0.157685128847;TFDP1:0.151730674602;ARID5B:0.150338600775;MAFB:0.139438621066;TFAP2B:0.130881814375;ZNF148:0.0905953409919;HNF1A:0.0887202117125;NFE2L1:0.088090504979;NHLH1,2:0.0802073512877;TFAP2{A,C}:0.0745149903449;GCM1,2:0.0735684751212;NFKB1_REL_RELA:0.0691797499046;GFI1:0.0681303758913;FOSL2:0.0674407733795;HIC1:0.0665126063176;ZBTB16:0.0513594275154;NKX6-1,2:0.0307804276935;PAX5:0.0241705359388;PAX2:0.0144914689293;HOXA9_MEIS1:0.00877907091124;SOX2:0.00462560441695;E2F1..5:-0.00161066407798;ZNF143:-0.0058889410447;HES1:-0.00624036099148;STAT1,3:-0.016281670644;PBX1:-0.0167109100804;ELF1,2,4:-0.0170826381505;ZFP161:-0.0203576078915;MED-1{core}:-0.0285779382802;LHX3,4:-0.0323642457473;GATA4:-0.0349696874127;SP1:-0.0431293998396;NRF1:-0.0432752856424;IRF1,2:-0.0610023029757;MYFfamily:-0.0715604942396;CDX1,2,4:-0.0768140220827;NFIL3:-0.0903378791549;ESR1:-0.0950076496527;PRRX1,2:-0.118851806213;SOX{8,9,10}:-0.139790743492;CREB1:-0.142192866659;RREB1:-0.146704022625;TFAP4:-0.148636538104;MTF1:-0.155749447923;EP300:-0.175910702036;STAT2,4,6:-0.176306550359;FOXL1:-0.17696940316;GATA6:-0.190220786555;STAT5{A,B}:-0.193202622047;FOXQ1:-0.193623998916;HMX1:-0.19502344928;REST:-0.202957870472;MEF2{A,B,C,D}:-0.2081592777;SOX5:-0.208339016416;POU1F1:-0.20865787857;DMAP1_NCOR{1,2}_SMARC:-0.20887731986;ADNP_IRX_SIX_ZHX:-0.212010882243;HAND1,2:-0.222360084265;HNF4A_NR2F1,2:-0.230563825235;NFY{A,B,C}:-0.234403195011;ETS1,2:-0.247154466774;MYB:-0.283805141675;IRF7:-0.302488483557;FOXN1:-0.305361778221;ATF5_CREB3:-0.345320886733;ZNF423:-0.356431010111;FOXD3:-0.361773376716;SPI1:-0.370722087557;YY1:-0.372039074751;CEBPA,B_DDIT3:-0.383261634721;OCT4_SOX2{dimer}:-0.387698756736;bHLH_family:-0.393797567738;PAX6:-0.40183064737;RFX2..5_RFXANK_RFXAP:-0.415738808287;TOPORS:-0.421432423366;SREBF1,2:-0.429029296638;BPTF:-0.448311920784;FOXP3:-0.490644811872;ATF4:-0.50079050347;NR1H4:-0.511577696899;SPIB:-0.540042844867;FOXP1:-0.544426153512;FOXA2:-0.549078917335;IKZF2:-0.568261815288;ZEB1:-0.581374489536;FOXO1,3,4:-0.5878086759;NR5A1,2:-0.598894130885;FOX{D1,D2}:-0.613355993979;LMO2:-0.647360133663;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.6739042192;TGIF1:-0.675301279653;NKX2-3_NKX2-5:-0.677299467238;BREu{core}:-0.687374754382;CUX2:-0.72885832234;SNAI1..3:-0.733682910347;RBPJ:-0.755478833353;NANOG:-0.772804320728;RORA:-0.799164724683;PITX1..3:-0.863673501573;MYOD1:-0.883200015426;ESRRA:-0.915600263994;T:-0.947145784093;VSX1,2:-0.949980474846;HOX{A6,A7,B6,B7}:-0.996231477996;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.04780851997;FOX{F1,F2,J1}:-1.14215579708;PDX1:-1.33493430522
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11760-123H5;search_select_hide=table117:FF:11760-123H5
}}
}}

Latest revision as of 18:18, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer left ovary, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12376
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005216
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12376 CAGE DRX008557 DRR009429
Accession ID Hg19

Library idBAMCTSS
CNhs12376 DRZ000854 DRZ002239
Accession ID Hg38

Library idBAMCTSS
CNhs12376 DRZ012204 DRZ013589
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.01
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0985
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.21
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0782
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0116
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.407
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0311
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.112
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.117
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.117
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0627
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0366
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.021
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0169
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.117
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.117
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.319
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.477
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.542
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.407
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.542
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12376

Jaspar motifP-value
MA0002.20.165
MA0003.10.637
MA0004.10.0841
MA0006.10.379
MA0007.10.978
MA0009.10.185
MA0014.10.89
MA0017.10.101
MA0018.20.0182
MA0019.10.196
MA0024.10.143
MA0025.10.625
MA0027.10.673
MA0028.10.242
MA0029.10.564
MA0030.10.214
MA0031.10.108
MA0035.20.103
MA0038.10.394
MA0039.20.0347
MA0040.10.642
MA0041.10.515
MA0042.10.982
MA0043.10.234
MA0046.10.549
MA0047.20.721
MA0048.10.118
MA0050.10.118
MA0051.10.461
MA0052.10.05
MA0055.10.167
MA0057.10.97
MA0058.10.0182
MA0059.10.244
MA0060.10.0385
MA0061.10.665
MA0062.20.246
MA0065.20.00248
MA0066.10.129
MA0067.10.0175
MA0068.10.122
MA0069.10.612
MA0070.10.784
MA0071.10.104
MA0072.10.244
MA0073.10.926
MA0074.10.989
MA0076.10.34
MA0077.10.788
MA0078.10.814
MA0079.20.428
MA0080.27.50352e-8
MA0081.10.0348
MA0083.11.73577e-7
MA0084.10.153
MA0087.10.587
MA0088.10.421
MA0090.10.00274
MA0091.10.761
MA0092.10.952
MA0093.10.193
MA0099.23.67652e-9
MA0100.10.701
MA0101.10.166
MA0102.20.929
MA0103.15.12456e-4
MA0104.20.00328
MA0105.10.951
MA0106.10.235
MA0107.10.092
MA0108.23.2948e-5
MA0111.10.19
MA0112.20.103
MA0113.10.873
MA0114.10.0184
MA0115.10.0333
MA0116.10.0274
MA0117.10.729
MA0119.10.978
MA0122.10.214
MA0124.10.391
MA0125.10.254
MA0131.10.962
MA0135.10.143
MA0136.12.64004e-6
MA0137.20.982
MA0138.20.156
MA0139.10.313
MA0140.10.259
MA0141.10.031
MA0142.10.595
MA0143.10.717
MA0144.10.857
MA0145.10.828
MA0146.10.136
MA0147.10.0144
MA0148.10.926
MA0149.10.428
MA0150.10.282
MA0152.10.0041
MA0153.10.608
MA0154.10.209
MA0155.10.358
MA0156.10.0888
MA0157.10.106
MA0159.10.0753
MA0160.10.00936
MA0162.10.289
MA0163.10.117
MA0164.10.992
MA0258.10.014
MA0259.10.435



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12376

Novel motifP-value
10.173
100.341
1000.443
1010.936
1020.142
1030.895
1040.773
1050.335
1060.959
1070.364
1080.674
1090.158
110.478
1100.52
1110.0621
1120.429
1130.0177
1140.327
1150.751
1160.511
1170.919
1180.307
1190.407
120.327
1200.214
1210.757
1220.0499
1238.68673e-4
1240.328
1250.798
1260.546
1270.877
1280.918
1290.647
130.23
1300.619
1310.072
1320.856
1330.706
1340.463
1350.826
1360.937
1370.876
1380.706
1390.748
140.169
1400.401
1410.569
1420.991
1430.63
1440.747
1450.712
1460.599
1470.235
1480.174
1490.497
150.492
1500.254
1510.157
1520.177
1530.505
1540.801
1550.00118
1560.264
1570.145
1580.00284
1590.135
160.314
1600.581
1610.353
1620.605
1630.488
1640.761
1650.981
1660.427
1670.209
1680.873
1690.625
170.734
180.619
190.936
20.743
200.609
210.331
220.767
230.347
240.808
250.0802
260.538
270.719
280.49
290.992
30.717
300.472
310.599
320.0019
330.935
340.926
350.668
360.0365
370.837
380.221
390.424
40.173
400.101
410.232
420.638
430.269
440.659
450.713
460.45
470.205
480.485
490.00693
50.74
500.796
510.476
520.984
530.105
540.591
550.287
560.517
570.302
580.0693
590.407
60.209
600.513
610.195
620.209
630.534
640.408
650.546
660.825
670.986
680.756
690.0649
70.0693
700.0889
710.389
720.405
730.584
740.1
750.803
760.658
770.625
780.0194
790.094
80.603
800.553
810.254
820.176
830.954
840.831
850.935
860.994
870.504
880.977
890.666
90.666
900.997
910.748
920.755
930.625
940.655
950.614
960.482
970.244
980.00673
990.0323



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12376


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002119 (left ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000273 (human mesenchymal precursor cell- ovarian cancer-left ovary sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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