FF:12988-138I9: Difference between revisions

Latest revision as of 18:48, 4 June 2020

Name:	EBF KO HPCs induced to T cell
Species:	Mouse (Mus musculus)
Library ID:	CNhs12980
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	NA
company	NA
collaboration	Tomokatsu Ikawa (RCAI)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005159

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12980		CAGE		DRX008900		DRR009772

Accession ID Mm9

Library id		BAM		CTSS
CNhs12980		DRZ001197		DRZ002582

Accession ID Mm10

Library id		BAM		CTSS
CNhs12980		DRZ012547		DRZ013932

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12980

0	0
1	0
10	0
100	0
1000	0
1001	-0.0749
1002	-0.116
1003	-0.175
1004	0
1005	0
1006	-0.24
1007	-0.15
1008	0
1009	-0.191
101	0.207
1010	0
1011	0
1012	0
1013	0.0596
1014	-0.0874
1015	-0.0949
1016	-0.379
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.183
1022	-0.289
1023	0.101
1024	0.112
1025	0
1026	0
1027	-0.048
1028	0
1029	-0.148
103	-0.0887
1030	0
1031	-1.049
1032	-0.383
1033	0.107
1034	0
1035	0
1036	0.375
1037	0
1038	-0.476
1039	-0.28
104	0
1040	-0.264
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12980

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.73789e-8
MA0003.1	MA0003.1	0.479
MA0004.1	MA0004.1	0.0671
MA0006.1	MA0006.1	0.975
MA0007.1	MA0007.1	0.466
MA0009.1	MA0009.1	0.665
MA0014.1	MA0014.1	0.709
MA0017.1	MA0017.1	0.383
MA0018.2	MA0018.2	0.771
MA0019.1	MA0019.1	0.872
MA0024.1	MA0024.1	5.38863e-4
MA0025.1	MA0025.1	0.166
MA0027.1	MA0027.1	0.893
MA0028.1	MA0028.1	4.08035e-7
MA0029.1	MA0029.1	0.195
MA0030.1	MA0030.1	0.0424
MA0031.1	MA0031.1	0.502
MA0035.2	MA0035.2	0.791
MA0038.1	MA0038.1	0.104
MA0039.2	MA0039.2	0.379
MA0040.1	MA0040.1	0.201
MA0041.1	MA0041.1	0.363
MA0042.1	MA0042.1	0.462
MA0043.1	MA0043.1	0.944
MA0046.1	MA0046.1	1.02195e-12
MA0047.2	MA0047.2	0.364
MA0048.1	MA0048.1	0.15
MA0050.1	MA0050.1	6.55323e-6
MA0051.1	MA0051.1	0.00173
MA0052.1	MA0052.1	0.173
MA0055.1	MA0055.1	0.073
MA0057.1	MA0057.1	0.928
MA0058.1	MA0058.1	0.0233
MA0059.1	MA0059.1	4.19146e-4
MA0060.1	MA0060.1	0.726
MA0061.1	MA0061.1	0.0396
MA0062.2	MA0062.2	1.24921e-15
MA0065.2	MA0065.2	0.097
MA0066.1	MA0066.1	0.0986
MA0067.1	MA0067.1	0.74
MA0068.1	MA0068.1	0.704
MA0069.1	MA0069.1	0.628
MA0070.1	MA0070.1	0.765
MA0071.1	MA0071.1	0.26
MA0072.1	MA0072.1	0.862
MA0073.1	MA0073.1	0.812
MA0074.1	MA0074.1	0.213
MA0076.1	MA0076.1	5.16746e-9
MA0077.1	MA0077.1	0.278
MA0078.1	MA0078.1	0.607
MA0079.2	MA0079.2	0.0381
MA0080.2	MA0080.2	9.12579e-12
MA0081.1	MA0081.1	8.98542e-4
MA0083.1	MA0083.1	0.00139
MA0084.1	MA0084.1	0.547
MA0087.1	MA0087.1	0.991
MA0088.1	MA0088.1	0.0602
MA0090.1	MA0090.1	0.0195
MA0091.1	MA0091.1	0.0809
MA0092.1	MA0092.1	0.385
MA0093.1	MA0093.1	0.0593
MA0099.2	MA0099.2	0.638
MA0100.1	MA0100.1	0.00136
MA0101.1	MA0101.1	0.0164
MA0102.2	MA0102.2	0.547
MA0103.1	MA0103.1	0.498
MA0104.2	MA0104.2	0.00743
MA0105.1	MA0105.1	6.40596e-5
MA0106.1	MA0106.1	0.0594
MA0107.1	MA0107.1	0.111
MA0108.2	MA0108.2	1.26844e-4
MA0111.1	MA0111.1	0.459
MA0112.2	MA0112.2	0.00836
MA0113.1	MA0113.1	0.199
MA0114.1	MA0114.1	0.677
MA0115.1	MA0115.1	0.651
MA0116.1	MA0116.1	8.21001e-4
MA0117.1	MA0117.1	0.931
MA0119.1	MA0119.1	0.871
MA0122.1	MA0122.1	0.477
MA0124.1	MA0124.1	0.573
MA0125.1	MA0125.1	0.048
MA0131.1	MA0131.1	0.195
MA0135.1	MA0135.1	0.0895
MA0136.1	MA0136.1	2.3385e-25
MA0137.2	MA0137.2	4.91805e-5
MA0138.2	MA0138.2	0.0119
MA0139.1	MA0139.1	0.195
MA0140.1	MA0140.1	0.396
MA0141.1	MA0141.1	0.198
MA0142.1	MA0142.1	0.562
MA0143.1	MA0143.1	0.299
MA0144.1	MA0144.1	0.0797
MA0145.1	MA0145.1	0.669
MA0146.1	MA0146.1	0.208
MA0147.1	MA0147.1	0.00305
MA0148.1	MA0148.1	0.488
MA0149.1	MA0149.1	0.0842
MA0150.1	MA0150.1	0.368
MA0152.1	MA0152.1	0.949
MA0153.1	MA0153.1	1.00276e-5
MA0154.1	MA0154.1	0.118
MA0155.1	MA0155.1	0.927
MA0156.1	MA0156.1	1.92336e-19
MA0157.1	MA0157.1	0.846
MA0159.1	MA0159.1	0.00958
MA0160.1	MA0160.1	0.305
MA0162.1	MA0162.1	0.202
MA0163.1	MA0163.1	3.87556e-6
MA0164.1	MA0164.1	0.927
MA0258.1	MA0258.1	0.0222
MA0259.1	MA0259.1	0.351

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12980

Novel motif	Logo	P-value
1	1	0.275
10	10	0.0223
100	100	0.861
101	101	0.971
102	102	0.338
103	103	0.0377
104	104	0.715
105	105	0.749
106	106	0.779
107	107	0.345
108	108	0.397
109	109	0.0843
11	11	0.0885
110	110	0.0361
111	111	0.00897
112	112	0.0439
113	113	0.667
114	114	0.888
115	115	0.985
116	116	0.707
117	117	4.06246e-4
118	118	0.145
119	119	0.583
12	12	0.491
120	120	0.42
121	121	0.165
122	122	0.885
123	123	0.816
124	124	0.71
125	125	0.344
126	126	0.223
127	127	0.304
128	128	0.386
129	129	0.551
13	13	0.016
130	130	0.786
131	131	0.746
132	132	0.506
133	133	0.766
134	134	0.268
135	135	0.638
136	136	0.719
137	137	0.152
138	138	0.372
139	139	0.137
14	14	0.621
140	140	0.534
141	141	0.826
142	142	0.862
143	143	0.135
144	144	0.83
145	145	0.0445
146	146	0.736
147	147	0.726
148	148	0.283
149	149	0.447
15	15	0.0105
150	150	0.464
151	151	0.387
152	152	0.474
153	153	0.885
154	154	0.686
155	155	0.192
156	156	0.092
157	157	0.855
158	158	0.344
159	159	0.49
160	160	0.953
161	161	0.056
162	162	0.395
163	163	0.23
164	164	0.0171
165	165	0.379
166	166	0.552
167	167	0.274
168	168	0.596
169	169	0.0292
17	17	0.827
18	18	0.184
19	19	0.82
2	2	0.118
20	20	0.0697
21	21	0.182
22	22	0.865
23	23	0.355
24	24	0.0603
25	25	0.11
26	26	0.0216
27	27	0.94
28	28	0.653
29	29	0.00543
3	3	0.0576
30	30	0.144
31	31	0.895
32	32	0.96
33	33	0.345
34	34	0.718
35	35	0.15
36	36	0.0234
37	37	0.0775
38	38	0.437
39	39	0.522
4	4	0.731
40	40	0.18
41	41	0.138
42	42	0.167
43	43	0.455
44	44	0.12
45	45	0.563
46	46	0.175
47	47	0.225
48	48	0.113
49	49	0.203
5	5	0.0619
50	50	0.59
51	51	0.741
52	52	0.33
53	53	0.511
54	54	0.898
55	55	0.159
56	56	0.717
57	57	0.148
58	58	0.168
59	59	0.718
6	6	0.499
60	60	0.719
61	61	0.113
62	62	0.0727
63	63	0.688
64	64	0.336
65	65	0.594
66	66	0.619
67	67	0.538
68	68	0.664
69	69	0.787
7	7	0.159
70	70	0.0178
71	71	0.00685
72	72	0.294
73	73	0.141
74	74	0.641
75	75	0.0076
76	76	0.136
77	77	0.423
78	78	0.148
79	79	0.898
8	8	0.0237
80	80	0.118
81	81	0.799
82	82	0.557
83	83	0.221
84	84	0.64
85	85	0.693
86	86	0.0778
87	87	0.196
88	88	0.459
89	89	0.358
9	9	0.927
90	90	0.0178
91	91	0.813
92	92	0.598
93	93	0.41
94	94	0.113
95	95	0.0841
96	96	0.231
97	97	0.578
98	98	0.627
99	99	0.373

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12980

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000729 mouse EBF KO HPCs induced to T cell 0h sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)
0000837 (hematopoietic multipotent progenitor cell)

FF: FANTOM5
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000342 (T-cell induction sample)
0000729 (mouse EBF KO HPCs induced to T cell 0h sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005159
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000084,CL:0000838,CL:0002031,CL:0000827,CL:0000037,CL:0000566,CL:0000837,CL:0000051
+|accession_numbers=CAGE;DRX008900;DRR009772;DRZ001197;DRZ002582;DRZ012547;DRZ013932
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084,CL:0000837
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000101,FF:0000103,FF:0000001,FF:0000350,FF:0000357,FF:0000342,FF:0000729
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|donor= biol_rep2
 |expression_enrichment_score=chr1:38721792..38721845,-!p1@Aff3!1.80!76.01!Aff3;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.78!74.44!Zbtb11;;chr11:11584970..11585030,+!p2@Ikzf1!1.72!72.87!Ikzf1;;chr3:135257325..135257364,-!p11@Nfkb1!1.65!43.62!Nfkb1;;chr3:135257370..135257389,-!p9@Nfkb1!1.62!40.75!Nfkb1;;chr6:52176164..52176195,-!p1@Hoxa9!1.50!37.87!Hoxa9;;chr10:20880629..20880683,-!p1@Myb!1.47!79.40!Myb;;chr11:11586218..11586285,+!p1@Ikzf1!1.45!84.11!Ikzf1;;chr4:134676555..134676575,+!p2@Runx3!1.44!26.38!Runx3;;chr12:12948633..12948651,-!p1@Mycn!1.43!239.78!Mycn;;chr2:28477452..28477483,-!p1@Gfi1b!1.39!29.25!Gfi1b;;chr14:79915425..79915501,+!p1@Elf1!1.37!190.68!Elf1;;chr17:51971932..51971958,-!p2@Satb1!1.29!25.34!Satb1;;chr6:52167459..52167492,-!p1@Hoxa7!1.29!21.94!Hoxa7;;chr17:51971960..51971979,-!p1@Satb1!1.28!24.29!Satb1;;chr10:20880731..20880775,-!p2@Myb!1.21!31.34!Myb;;chr12:12947182..12947194,-!p3@Mycn!1.19!14.63!Mycn;;chr8:87225329..87225396,+!p1@Lyl1!1.16!50.93!Lyl1;;chr11:11590140..11590187,+!p3@Ikzf1!1.15!15.67!Ikzf1;;chr11:16908650..16908690,-!p1@Plek!1.14!78.36!Plek;;chr7:51787434..51787448,-!p1@Spib!1.12!17.50!Spib;;chr19:25685023..25685043,+!p1@Dmrt3!1.11!11.75!Dmrt3;;chr2:90936901..90936945,+!p1@Sfpi1!1.08!58.77!Sfpi1;;chr2:153475178..153475196,+!p1@Dnmt3b!1.08!23.77!Dnmt3b;;chr6:99216488..99216534,-!p2@Foxp1!1.06!29.78!Foxp1;;chr11:11585912..11585950,+!p6@Ikzf1!1.05!13.06!Ikzf1;;chr8:125921689..125921725,+!p3@Tcf25!1.05!10.19!Tcf25;;chr11:3191741..3191769,+!p5@Patz1!1.04!12.80!Patz1;;chr7:20162663..20162678,+!p1@Zfp296!1.02!12.54!Zfp296;;chr15:103085802..103085817,-!p4@Nfe2!1.01!11.75!Nfe2;;chr12:12947199..12947213,-!p2@Mycn!1.01!9.14!Mycn;;chr13:83663902..83663927,+!p1@Mef2c!0.99!216.80!Mef2c;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!0.99!8.88!Sp140;;chr15:103085660..103085681,-!p1@Nfe2!0.97!12.80!Nfe2;;chr3:135271185..135271254,-!p4@Nfkb1!0.96!15.15!Nfkb1;;chr17:44872561..44872615,-!p1@Runx2!0.94!18.02!Runx2;;chr10:20880698..20880717,-!p3@Myb!0.94!12.28!Myb;;chr15:61816932..61816952,+!p2@Myc!0.93!65.04!Myc;;chr4:63064364..63064384,-!p1@Akna!0.93!22.72!Akna;;chr2:90936947..90936977,+!p2@Sfpi1!0.93!15.41!Sfpi1;;chr17:21626055..21626081,+!p2@Zfp53!0.93!12.80!Zfp53;;chr1:87497443..87497454,+!p3@Gm2427,p3@Sp140!0.93!7.57!Sp140;;chr4:134708451..134708469,+!p1@Runx3!0.92!13.32!Runx3;;chr6:52176144..52176161,-!p2@Hoxa9!0.92!7.31!Hoxa9;;chr6:52163319..52163342,-!p1@Hoxa3!0.91!10.45!Hoxa3;;chr14:79915521..79915539,+!p5@Elf1!0.91!8.62!Elf1;;chr12:12947406..12947418,-!p5@Mycn!0.91!7.05!Mycn;;chr7:123174606..123174636,-!p5@Sox6!0.90!8.88!Sox6;;chr12:87027598..87027652,+!p1@Batf!0.89!16.19!Batf;;chr1:36364590..36364608,+!p1@Arid5a!0.86!67.65!Arid5a;;chr16:92826249..92826325,-!p1@Runx1!0.86!15.93!Runx1;;chr11:11585678..11585745,+!p5@Ikzf1!0.86!9.40!Ikzf1;;chr9:32348943..32349001,-!p1@Fli1!0.85!52.24!Fli1;;chr19:37509324..37509337,+!p1@Hhex!0.85!45.71!Hhex;;chr8:87225702..87225726,+!p3@Lyl1!0.84!12.54!Lyl1;;chr12:3891810..3891829,+!p2@Dnmt3a!0.84!9.40!Dnmt3a;;chr7:123174485..123174514,-!p6@Sox6!0.80!6.79!Sox6;;chr8:123260252..123260264,+!p1@Irf8!0.79!39.70!Irf8;;chr6:116578973..116579022,-!p1@Zfp422!0.78!94.03!Zfp422;;chr6:29476690..29476724,+!p1@Irf5!0.78!25.34!Irf5;;chr11:11590117..11590138,+!p4@Ikzf1!0.78!4.96!Ikzf1;;chr5:92391466..92391471,+!p2@Thap6!0.77!7.31!Thap6;;chr6:99471223..99471254,-!p7@Foxp1!0.76!7.57!Foxp1;;chr15:103085690..103085710,-!p3@Nfe2!0.76!5.22!Nfe2;;chr14:79915502..79915514,+!p4@Elf1!0.75!7.31!Elf1;;chr8:87225670..87225697,+!p2@Lyl1!0.74!14.37!Lyl1;;chr6:99216375..99216395,-!p5@Foxp1!0.74!4.44!Foxp1;;chr6:29479277..29479296,+!p2@Irf5!0.74!4.44!Irf5;;chr1:38721767..38721778,-!p5@Aff3!0.74!4.44!Aff3;;chr2:90936978..90937023,+!p3@Sfpi1!0.73!8.88!Sfpi1;;chr7:19895354..19895369,-!p1@Fosb!0.73!6.27!Fosb;;chr11:18918434..18918489,-!p3@Meis1!0.72!7.05!Meis1;;chr13:83663868..83663894,+!p2@Mef2c!0.71!67.65!Mef2c;;chr17:44873258..44873281,-!p5@Runx2!0.71!5.75!Runx2;;chr6:29479308..29479325,+!p3@Irf5!0.71!4.18!Irf5;;chr1:38721779..38721790,-!p6@Aff3!0.71!4.18!Aff3;;chr4:6917606..6917681,-!p1@Tox!0.69!18.28!Tox;;chr17:51971991..51972003,-!p4@Satb1!0.69!3.92!Satb1;;chr17:51972603..51972624,-!p9@Satb1!0.69!3.92!Satb1;;chr6:99216360..99216372,-!p8@Foxp1!0.69!3.92!Foxp1;;chr2:153475210..153475252,+!p2@Dnmt3b!0.68!11.49!Dnmt3b;;chr11:60036258..60036276,-!p3@Srebf1!0.68!7.05!Srebf1;;chr1:133904901..133904934,+!p3@Elk4!0.67!12.02!Elk4;;chr11:100683839..100683890,-!p2@Stat5b!0.67!9.40!Stat5b;;chr1:133904862..133904893,+!p6@Elk4!0.67!8.36!Elk4;;chr17:51965903..51965926,-!p5@Satb1!0.67!3.66!Satb1;;chr4:124805061..124805087,-!p1@Zc3h12a!0.64!11.75!Zc3h12a;;chr6:116578939..116578952,-!p2@Zfp422!0.64!8.88!Zfp422;;chr6:99471044..99471066,-!p4@Foxp1!0.64!7.84!Foxp1;;chr13:59923965..59924003,-!p2@Zcchc6!0.64!4.18!Zcchc6;;chr3:135271325..135271343,-!p15@Nfkb1!0.64!3.40!Nfkb1;;chr6:52167434..52167450,-!p3@Hoxa7!0.62!3.13!Hoxa7;;chr10:20881239..20881254,-!p5@Myb!0.62!3.13!Myb;;chr11:95609863..95609870,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+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 45: @@
 |is_a=EFO:0002091;;FF:0000729
 |is_obsolete=
-|name=EBF KO HPCs induced to T cell, 00hr00min, biol_rep2
+|library_id=CNhs12980
+|library_id_phase_based=2:CNhs12980
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12988
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12988
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/EBF%2520KO%2520HPCs%2520induced%2520to%2520T%2520cell%252c%252000hr00min%252c%2520biol_rep2.CNhs12980.12988-138I9.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/EBF%2520KO%2520HPCs%2520induced%2520to%2520T%2520cell%252c%252000hr00min%252c%2520biol_rep2.CNhs12980.12988-138I9.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/EBF%2520KO%2520HPCs%2520induced%2520to%2520T%2520cell%252c%252000hr00min%252c%2520biol_rep2.CNhs12980.12988-138I9.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/EBF%2520KO%2520HPCs%2520induced%2520to%2520T%2520cell%252c%252000hr00min%252c%2520biol_rep2.CNhs12980.12988-138I9.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/EBF%2520KO%2520HPCs%2520induced%2520to%2520T%2520cell%252c%252000hr00min%252c%2520biol_rep2.CNhs12980.12988-138I9.mm9.nobarcode.rdna.fa.gz
+|name=EBF KO HPCs induced to T cell
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
 |profile_hcage=CNhs12980,LSID993,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0.182528654974432,0,-0.356684203370802,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0594039587652579,0,0.85989906920933,0,0,0,0.100783889465809,0,0,0,0,0,0,0.100783889465809,0.155839606831079,0,0,0,0,-0.0499933372715238,-0.11805839800861,-0.175149267443353,-0.370307663490376,-0.984211366477826,-0.269868638010351,0.182528654974432,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.040920811129406,0,-0.0050479106268705,0,0.100783889465809,0,-0.111178093209964,0,-0.158091042771083,-0.0537030295375345,0,-0.0769039220261714,-0.205379539342993,-0.237022816195277,0,0,-0.161584336179705,-0.121715582968928,0.020497345441696,0.103697060134525,0,0,0,0,0,0,-0.0773372897074742,-0.277631472266578,0.357428573582035,0,0,0,0.100783889465809,0
 |rna_box=138
 |rna_catalog_number=
@@ Line 58: / Line 77: @@
 |rna_weight_ug=4.46
 |sample_age=
+|sample_category=time courses
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_strain=
 |sample_tissue=
+|time= 00hr00min
+|timecourse=T-cell_differentiation
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12988-138I9;search_select_hide=table117:12988-138I9
 }}

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FF:12988-138I9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:48, 4 June 2020

CNhs12980

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0