FF:11780-124A7: Difference between revisions

Latest revision as of 18:19, 4 June 2020

Name:	CD4+CD25+CD45RA+ naive regulatory T cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13238
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005426

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13238		CAGE		DRX008060		DRR008932

Accession ID Hg19

Library id		BAM		CTSS
CNhs13238		DRZ000357		DRZ001742

Accession ID Hg38

Library id		BAM		CTSS
CNhs13238		DRZ011707		DRZ013092

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.661
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.218
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.471
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.21
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.32
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.788
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.452
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.857
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.361
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.236
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.123
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.557
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.895
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.218
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.203
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.446
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.218
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.199
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.837
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.123
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.399
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.929
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.661
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.598
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.663
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.912
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.123
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.891
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.296
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13238

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.24755e-4
MA0003.1	MA0003.1	0.437
MA0004.1	MA0004.1	0.701
MA0006.1	MA0006.1	0.0399
MA0007.1	MA0007.1	0.962
MA0009.1	MA0009.1	0.192
MA0014.1	MA0014.1	0.384
MA0017.1	MA0017.1	0.907
MA0018.2	MA0018.2	2.27826e-10
MA0019.1	MA0019.1	0.403
MA0024.1	MA0024.1	0.941
MA0025.1	MA0025.1	0.0674
MA0027.1	MA0027.1	0.431
MA0028.1	MA0028.1	6.29309e-8
MA0029.1	MA0029.1	0.761
MA0030.1	MA0030.1	0.00164
MA0031.1	MA0031.1	2.57282e-5
MA0035.2	MA0035.2	0.136
MA0038.1	MA0038.1	0.246
MA0039.2	MA0039.2	0.491
MA0040.1	MA0040.1	0.853
MA0041.1	MA0041.1	0.603
MA0042.1	MA0042.1	0.666
MA0043.1	MA0043.1	2.61068e-4
MA0046.1	MA0046.1	0.667
MA0047.2	MA0047.2	0.0671
MA0048.1	MA0048.1	0.708
MA0050.1	MA0050.1	1.61226e-4
MA0051.1	MA0051.1	0.02
MA0052.1	MA0052.1	0.0256
MA0055.1	MA0055.1	0.441
MA0057.1	MA0057.1	0.437
MA0058.1	MA0058.1	0.604
MA0059.1	MA0059.1	0.705
MA0060.1	MA0060.1	0.818
MA0061.1	MA0061.1	0.079
MA0062.2	MA0062.2	9.54976e-23
MA0065.2	MA0065.2	0.625
MA0066.1	MA0066.1	0.738
MA0067.1	MA0067.1	0.00542
MA0068.1	MA0068.1	0.971
MA0069.1	MA0069.1	0.772
MA0070.1	MA0070.1	0.937
MA0071.1	MA0071.1	0.876
MA0072.1	MA0072.1	0.214
MA0073.1	MA0073.1	0.937
MA0074.1	MA0074.1	0.132
MA0076.1	MA0076.1	2.51449e-10
MA0077.1	MA0077.1	0.0359
MA0078.1	MA0078.1	0.678
MA0079.2	MA0079.2	0.672
MA0080.2	MA0080.2	3.06307e-10
MA0081.1	MA0081.1	0.00934
MA0083.1	MA0083.1	0.0384
MA0084.1	MA0084.1	0.271
MA0087.1	MA0087.1	0.764
MA0088.1	MA0088.1	0.331
MA0090.1	MA0090.1	2.35643e-4
MA0091.1	MA0091.1	0.254
MA0092.1	MA0092.1	0.599
MA0093.1	MA0093.1	0.757
MA0099.2	MA0099.2	8.4987e-5
MA0100.1	MA0100.1	0.459
MA0101.1	MA0101.1	0.895
MA0102.2	MA0102.2	0.59
MA0103.1	MA0103.1	0.279
MA0104.2	MA0104.2	0.0698
MA0105.1	MA0105.1	0.00402
MA0106.1	MA0106.1	0.0828
MA0107.1	MA0107.1	0.937
MA0108.2	MA0108.2	6.36676e-6
MA0111.1	MA0111.1	0.454
MA0112.2	MA0112.2	0.645
MA0113.1	MA0113.1	0.779
MA0114.1	MA0114.1	0.736
MA0115.1	MA0115.1	0.688
MA0116.1	MA0116.1	0.0142
MA0117.1	MA0117.1	0.0351
MA0119.1	MA0119.1	0.0918
MA0122.1	MA0122.1	0.53
MA0124.1	MA0124.1	0.329
MA0125.1	MA0125.1	0.274
MA0131.1	MA0131.1	0.0283
MA0135.1	MA0135.1	0.369
MA0136.1	MA0136.1	3.30483e-24
MA0137.2	MA0137.2	0.692
MA0138.2	MA0138.2	0.188
MA0139.1	MA0139.1	0.0892
MA0140.1	MA0140.1	0.223
MA0141.1	MA0141.1	0.273
MA0142.1	MA0142.1	0.102
MA0143.1	MA0143.1	0.204
MA0144.1	MA0144.1	0.707
MA0145.1	MA0145.1	0.0247
MA0146.1	MA0146.1	0.7
MA0147.1	MA0147.1	0.0774
MA0148.1	MA0148.1	0.279
MA0149.1	MA0149.1	0.285
MA0150.1	MA0150.1	0.283
MA0152.1	MA0152.1	0.00359
MA0153.1	MA0153.1	0.465
MA0154.1	MA0154.1	0.698
MA0155.1	MA0155.1	0.141
MA0156.1	MA0156.1	8.32959e-20
MA0157.1	MA0157.1	6.31214e-5
MA0159.1	MA0159.1	0.643
MA0160.1	MA0160.1	0.821
MA0162.1	MA0162.1	0.165
MA0163.1	MA0163.1	5.41096e-4
MA0164.1	MA0164.1	0.839
MA0258.1	MA0258.1	0.726
MA0259.1	MA0259.1	0.0886

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13238

Novel motif	Logo	P-value
1	1	0.699
10	10	0.0238
100	100	0.615
101	101	0.488
102	102	0.654
103	103	0.873
104	104	0.866
105	105	0.371
106	106	0.705
107	107	1.49079e-4
108	108	0.391
109	109	0.278
11	11	0.511
110	110	0.853
111	111	0.873
112	112	0.974
113	113	0.694
114	114	0.997
115	115	0.359
116	116	0.0613
117	117	0.00361
118	118	0.352
119	119	0.0766
12	12	0.826
120	120	0.954
121	121	0.805
122	122	0.567
123	123	0.0281
124	124	0.71
125	125	0.224
126	126	0.914
127	127	0.982
128	128	0.0988
129	129	0.886
13	13	0.543
130	130	0.543
131	131	0.256
132	132	0.296
133	133	0.965
134	134	0.843
135	135	0.912
136	136	0.755
137	137	0.0492
138	138	0.445
139	139	0.198
14	14	0.764
140	140	0.27
141	141	0.642
142	142	0.54
143	143	0.0101
144	144	0.813
145	145	0.308
146	146	0.792
147	147	0.0197
148	148	0.659
149	149	0.41
15	15	0.401
150	150	0.861
151	151	0.902
152	152	0.241
153	153	0.871
154	154	0.553
155	155	0.0107
156	156	0.911
157	157	0.54
158	158	0.00486
159	159	0.589
16	16	0.373
160	160	0.13
161	161	0.788
162	162	0.00676
163	163	0.666
164	164	0.111
165	165	0.874
166	166	0.214
167	167	0.0838
168	168	0.88
169	169	0.0921
17	17	0.519
18	18	0.686
19	19	0.0429
2	2	0.226
20	20	0.296
21	21	0.841
22	22	0.374
23	23	0.27
24	24	0.646
25	25	0.101
26	26	0.961
27	27	0.806
28	28	0.581
29	29	0.0323
3	3	0.462
30	30	0.156
31	31	0.616
32	32	0.0273
33	33	0.126
34	34	0.339
35	35	0.475
36	36	0.0354
37	37	0.572
38	38	0.767
39	39	0.178
4	4	0.775
40	40	0.814
41	41	0.0803
42	42	0.253
43	43	0.733
44	44	0.977
45	45	0.188
46	46	0.84
47	47	0.36
48	48	0.682
49	49	0.322
5	5	0.666
50	50	0.513
51	51	0.969
52	52	0.273
53	53	0.678
54	54	0.834
55	55	0.829
56	56	0.747
57	57	0.756
58	58	0.18
59	59	0.518
6	6	0.692
60	60	0.9
61	61	0.0885
62	62	0.287
63	63	0.765
64	64	0.695
65	65	0.629
66	66	0.927
67	67	0.841
68	68	0.483
69	69	0.956
7	7	0.466
70	70	0.271
71	71	0.209
72	72	0.12
73	73	0.915
74	74	0.69
75	75	0.00675
76	76	0.0498
77	77	0.00563
78	78	0.358
79	79	0.345
8	8	0.346
80	80	0.0205
81	81	0.674
82	82	0.432
83	83	0.99
84	84	0.613
85	85	0.226
86	86	0.2
87	87	0.826
88	88	0.996
89	89	0.0403
9	9	0.909
90	90	0.188
91	91	0.962
92	92	0.666
93	93	0.849
94	94	0.312
95	95	0.0101
96	96	0.638
97	97	0.301
98	98	0.377
99	99	6.80335e-6

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13238

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002677 naive regulatory T cell
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000815 (regulatory T cell)
0000898 (naive T cell)
0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell)
0002677 (naive regulatory T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005426
+|accession_numbers=CAGE;DRX008060;DRR008932;DRZ000357;DRZ001742;DRZ011707;DRZ013092
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000815,CL:0000898,CL:0000792,CL:0002677
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.23!167.85!FOXP3;;chr3:71355163..71355209,-!p5@FOXP1!2.17!199.46!FOXP1;;chr3:63953435..63953499,+!p1@ATXN7!2.01!100.71!ATXN7;;chr19:54058073..54058088,+!p1@ZNF331!1.94!86.37!ZNF331;;chr4:109087445..109087463,-!p1@LEF1!1.90!77.90!LEF1;;chr19:16435625..16435682,+!p1@KLF2!1.82!1938.59!KLF2;;chr4:109090075..109090095,-!p2@LEF1!1.82!65.51!LEF1;;chr6:91006518..91006570,-!p1@BACH2!1.81!143.08!BACH2;;chr5:133451294..133451310,+!p2@TCF7!1.79!60.30!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.78!58.99!IKZF1;;chr19:54041669..54041697,+!p2@ZNF331!1.77!58.34!ZNF331;;chr10:35484053..35484076,+!p1@CREM!1.76!137.54!CREM;;chr1:25256756..25256774,-!p1@RUNX3!1.75!100.38!RUNX3;;chrX:106960285..106960299,-!p1@TSC22D3!1.72!1302.71!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!1.72!257.80!NR4A2;;chr3:71542615..71542644,-!p12@FOXP1!1.72!51.50!FOXP1;;chr19:19779619..19779670,+!p1@ZNF101!1.71!137.21!ZNF101;;chrY:21906594..21906622,-!p1@KDM5D!1.64!42.70!KDM5D;;chr5:133450365..133450444,+!p1@TCF7!1.58!162.31!TCF7;;chr10:35416142..35416169,+!p3@CREM!1.57!93.87!CREM;;chr2:231090433..231090469,+!p1@SP140!1.56!35.20!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.52!6958.44!JUNB;;chr3:18486354..18486377,-!p2@SATB1!1.52!40.09!SATB1;;chr4:109089901..109089930,-!p3@LEF1!1.49!29.98!LEF1;;chr17:37934365..37934387,-!p2@IKZF3!1.49!29.98!IKZF3;;chr6:391743..391759,+!p1@IRF4!1.49!29.98!IRF4;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.01!AFF3;;chr2:97202991..97203043,+!p3@ARID5A!1.45!27.38!ARID5A;;chr17:38497662..38497713,+!p4@RARA!1.43!30.31!RARA;;chr2:100759010..100759035,-!p1@AFF3!1.42!25.10!AFF3;;chr11:128392273..128392308,-!p2@ETS1!1.41!100.71!ETS1;;chr3:71353892..71353928,-!p31@FOXP1!1.41!24.77!FOXP1;;chr14:64971288..64971316,-!p2@ZBTB25!1.39!70.40!ZBTB25;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.79!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.38!61.60!AKNA;;chr10:35416172..35416184,+!p13@CREM!1.38!23.14!CREM;;chr10:35484090..35484104,+!p6@CREM!1.38!23.14!CREM;;chr5:133451347..133451358,+!p3@TCF7!1.37!22.49!TCF7;;chr9:3525727..3525828,-!p2@RFX3!1.36!55.08!RFX3;;chr8:123793988..123794016,+!p1@ZHX2!1.33!35.85!ZHX2;;chr2:192015701..192015743,-!p1@STAT4!1.32!27.05!STAT4;;chr6:91006575..91006602,-!p2@BACH2!1.31!28.68!BACH2;;chr6:91006503..91006517,-!p3@BACH2!1.31!19.56!BACH2;;chr3:71542651..71542683,-!p22@FOXP1!1.31!19.56!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!1.31!19.23!LEF1;;chr2:97202480..97202499,+!p1@ARID5A!1.29!180.89!ARID5A;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.29!102.67!ZNF10;;chr3:18480217..18480239,-!p3@SATB1!1.28!18.25!SATB1;;chr4:109088089..109088101,-!p11@LEF1!1.26!17.27!LEF1;;chr10:35416223..35416234,+!p12@CREM!1.26!17.27!CREM;;chr1:45805693..45805718,+!p3@TOE1!1.25!35.85!TOE1;;chr2:214017168..214017189,-!p8@IKZF2!1.25!16.95!IKZF2;;chr4:38665769..38665801,+!p2@KLF3!1.24!144.06!KLF3;;chr15:60884706..60884743,-!p1@RORA!1.24!83.76!RORA;;chr8:81397846..81397860,+!p3@ZBTB10!1.24!20.53!ZBTB10;;chr7:50344251..50344288,+!p3@IKZF1!1.24!16.30!IKZF1;;chr21:36421535..36421610,-!p2@RUNX1!1.23!56.38!RUNX1;;chr2:192015750..192015793,-!p2@STAT4!1.22!20.86!STAT4;;chr3:71542684..71542720,-!p18@FOXP1!1.22!15.64!FOXP1;;chr4:109088130..109088163,-!p13@LEF1!1.22!15.64!LEF1;;chr9:102584262..102584276,+!p1@NR4A3!1.20!32.92!NR4A3;;chr11:128392085..128392232,-!p1@ETS1!1.19!472.91!ETS1;;chr19:16435523..16435619,+!p2@KLF2!1.19!19.88!KLF2;;chr6:12009042..12009092,+!p6@HIVEP1!1.18!18.58!HIVEP1;;chr19:19779686..19779697,+!p3@ZNF101!1.18!16.62!ZNF101;;chr19:19729477..19729542,-!p1@PBX4!1.17!29.66!PBX4;;chr19:12444440..12444455,-!p1@ZNF563!1.17!24.12!ZNF563;;chr19:54041645..54041661,+!p5@ZNF331!1.17!13.69!ZNF331;;chr13:41240717..41240735,-!p2@FOXO1!1.16!90.28!FOXO1;;chr14:64970670..64970712,-!p3@ZBTB25!1.16!29.01!ZBTB25;;chr2:231090471..231090504,+!p2@SP140!1.16!13.36!SP140;;chr3:63898321..63898396,+!p3@ATXN7!1.14!29.01!ATXN7;;chr16:3313791..3313834,+!p2@ZNF263!1.14!28.68!ZNF263;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.90!NFATC2;;chr19:54040550..54040594,+!p20@ZNF331!1.14!12.71!ZNF331;;chr9:20620829..20620848,-!p7@MLLT3!1.14!12.71!MLLT3;;chr2:214016254..214016282,-!p7@IKZF2!1.13!12.39!IKZF2;;chr3:71542747..71542766,-!p34@FOXP1!1.13!12.39!FOXP1;;chr4:38665810..38665827,+!p1@KLF3!1.12!176.00!KLF3;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!76.92!CSRNP1;;chr19:16435423..16435484,+!p5@KLF2!1.12!12.06!KLF2;;chr14:75745523..75745537,+!p1@FOS!1.11!1418.09!FOS;;chr9:20621927..20621996,-!p3@MLLT3!1.11!20.21!MLLT3;;chr14:75988771..75988826,+!p1@BATF!1.11!15.97!BATF;;chr12:72056800..72056834,+!p1@THAP2!1.11!15.97!THAP2;;chr13:41593425..41593480,-!p1@ELF1!1.10!73.33!ELF1;;chr18:3449330..3449344,+!p10@TGIF1!1.10!15.32!TGIF1;;chr8:81397876..81397898,+!p5@ZBTB10!1.09!13.36!ZBTB10;;chr9:20622444..20622468,-!p2@MLLT3!1.08!36.18!MLLT3;;chrX:101186981..101187030,-!p1@ZMAT1!1.07!35.20!ZMAT1;;chr17:38497715..38497734,+!p8@RARA!1.07!10.76!RARA;;chr8:81397820..81397836,+!p2@ZBTB10!1.06!13.04!ZBTB10;;chr10:35416125..35416138,+!p10@CREM!1.06!12.39!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.06!10.43!IKZF2;;chr4:109089996..109090012,-!p5@LEF1!1.05!10.10!LEF1;;chr17:56565257..56565283,-!p2@HSF5!1.05!10.10!HSF5;;chr10:35485013..35485034,+!p15@CREM!1.05!10.10!CREM;;chr19:45971246..45971265,+!p1@FOSB!1.04!187.08!FOSB;;chrX:106960221..106960236,-!p3@TSC22D3!1.04!28.03!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.70!NFATC1;;chr9:114287433..114287513,+!p1@ZNF483!1.03!25.42!ZNF483;;chr3:23986824..23986848,+!p2@NR1D2!1.02!54.43!NR1D2;;chr19:52674696..52674758,-!p1@ZNF836!1.02!28.68!ZNF836;;chr8:60031619..60031676,-!p1@TOX!1.02!20.53!TOX;;chr4:109086281..109086319,-!p9@LEF1!1.02!9.45!LEF1;;chr12:57914286..57914304,-!p1@DDIT3!1.01!341.24!DDIT3;;chrX:106960180..106960197,-!p2@TSC22D3!1.01!35.53!TSC22D3;;chr3:71542827..71542838,-!p53@FOXP1!1.01!9.13!FOXP1;;chr20:56195474..56195506,-!p1@ZBP1!1.01!9.13!ZBP1;;chr14:99738138..99738163,-!p1@BCL11B!1.01!9.13!BCL11B;;chr13:41240737..41240787,-!p1@FOXO1!1.00!108.86!FOXO1;;chr2:208394817..208394834,+!p3@CREB1!1.00!36.83!CREB1;;chr15:60884747..60884774,-!p3@RORA!0.99!21.84!RORA;;chr13:74707894..74707947,-!p6@KLF12!0.99!9.78!KLF12;;chrY:2803415..2803468,+!p1@ZFY!0.99!8.80!ZFY;;chr4:109090054..109090073,-!p7@LEF1!0.99!8.80!LEF1;;chr5:142814241..142814278,-!p12@NR3C1!0.99!8.80!NR3C1;;chr19:19843900..19843928,-!p1@ZNF14!0.96!42.04!ZNF14;;chr9:102584241..102584261,+!p4@NR4A3!0.96!12.71!NR4A3;;chr6:106546808..106546833,+!p3@PRDM1!0.96!10.43!PRDM1;;chr12:56418637..56418648,+!p9@IKZF4!0.96!8.15!IKZF4;;chr19:18392422..18392440,-!p1@JUND!0.95!1128.99!JUND;;chr19:45972701..45972774,+!p2@FOSB!0.95!11.08!FOSB;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.45!GATA3;;chr19:16435735..16435773,+!p4@KLF2!0.95!7.82!KLF2;;chr3:18487057..18487105,-!p4@SATB1!0.95!7.82!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.95!7.82!LEF1;;chr7:99097863..99097936,-!p1@ZNF394!0.94!80.18!ZNF394;;chr19:49140609..49140643,-!p1@DBP!0.94!44.65!DBP;;chr2:157198916..157198978,-!p2@NR4A2!0.94!28.03!NR4A2;;chr5:172483347..172483407,+!p1@C5orf41!0.93!58.99!CREBRF;;chr2:214015111..214015179,-!p1@IKZF2!0.93!13.69!IKZF2;;chr4:109086403..109086421,-!p19@LEF1!0.93!7.50!LEF1;;chr17:38020516..38020544,-!p5@IKZF3!0.93!7.50!IKZF3;;chr12:72056773..72056796,+!p3@THAP2!0.91!9.45!THAP2;;chr7:50344144..50344157,+!p6@IKZF1!0.91!7.17!IKZF1;;chr19:54041574..54041589,+!p6@ZNF331!0.91!7.17!ZNF331;;chr3:71179699..71179744,-!p2@FOXP1!0.90!54.10!FOXP1;;chr14:65569101..65569119,-!p3@MAX!0.90!23.14!MAX;;chr19:22235279..22235301,+!p1@ZNF257!0.90!13.36!ZNF257;;chr12:133706975..133707013,-!p3@ZNF891!0.90!9.45!ZNF891;;chr13:74708246..74708264,-!p8@KLF12!0.90!7.82!KLF12;;chr11:67007548..67007610,+!p3@KDM2A!0.89!52.80!KDM2A;;chr7:21467674..21467727,+!p1@SP4!0.89!28.36!SP4;;chr4:109087906..109087928,-!p12@LEF1!0.89!6.84!LEF1;;chr3:18466787..18466839,-!p1@SATB1!0.88!30.64!SATB1;;chr9:73028332..73028385,-!p3@KLF9!0.88!23.79!KLF9;;chr7:50344289..50344323,+!p1@IKZF1!0.88!6.52!IKZF1;;chr3:18480173..18480189,-!p6@SATB1!0.88!6.52!SATB1;;chr4:149363494..149363543,-!p1@NR3C2!0.88!6.52!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.88!6.52!NR3C2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.86!81.15!ZC3H12A;;chr10:104154246..104154347,+!p3@NFKB2!0.86!40.09!NFKB2;;chr9:3525867..3525902,-!p3@RFX3!0.86!22.49!RFX3;;chr19:12721790..12721810,+!p2@ZNF791!0.86!18.25!ZNF791;;chrY:21906761..21906810,-!p2@KDM5D!0.86!6.19!KDM5D;;chr10:135121763..135121783,+!p5@ZNF511!0.86!6.19!ZNF511;;chr2:214013461..214013517,-!p6@IKZF2!0.86!6.19!IKZF2;;chr4:109090106..109090124,-!p10@LEF1!0.86!6.19!LEF1;;chr6:106546834..106546850,+!p4@PRDM1!0.86!6.19!PRDM1;;chr7:50348268..50348366,+!p4@IKZF1!0.86!6.19!IKZF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.85!339.61!NFKBIZ;;chr4:140005443..140005527,-!p2@ELF2!0.85!38.13!ELF2;;chr1:91487836..91487854,-!p3@ZNF644!0.85!14.34!ZNF644;;chr9:32550839..32550962,-!p3@TOPORS!0.84!15.64!TOPORS;;chr19:38085768..38085821,+!p1@ZNF540!0.84!9.13!ZNF540;;chr7:104654718..104654741,+!p3@MLL5!0.84!8.80!MLL5;;chr2:231090344..231090361,-!p3@SP110!0.84!5.87!SP110;;chr19:54041603..54041615,+!p10@ZNF331!0.84!5.87!ZNF331;;chr19:9546177..9546224,-!p1@ZNF266!0.83!43.67!ZNF266;;chr13:74708029..74708077,-!p2@KLF12!0.83!17.27!KLF12;;chr10:8096631..8096660,+!p1@GATA3!0.83!7.17!GATA3;;chr19:9879350..9879419,-!p2@ZNF846!0.82!12.39!ZNF846;;chr19:12405606..12405629,-!p2@ZNF44!0.82!11.41!ZNF44;;chr7:50343864..50343888,+!p7@IKZF1!0.82!5.54!IKZF1;;chr19:38086030..38086048,-!p2@ZNF571!0.82!5.54!ZNF571;;chr14:64971893..64971928,-!p8@ZBTB25!0.82!5.54!ZBTB25;;chr2:43453734..43453751,-!p1@ZFP36L2!0.81!633.27!ZFP36L2;;chr7:104654690..104654704,+!p2@MLL5!0.81!11.41!MLL5;;chr17:36861735..36861755,+!p4@MLLT6!0.81!9.78!MLLT6;;chr10:3824332..3824425,-!p4@KLF6!0.81!9.13!KLF6;;chr7:127032330..127032356,-!p3@ZNF800!0.81!7.17!ZNF800;;chr14:69262947..69262986,-!p3@ZFP36L1!0.81!6.84!ZFP36L1;;chr14:90085458..90085557,-!p1@FOXN3!0.80!59.97!FOXN3;;chr2:61108695..61108753,+!p1@REL!0.80!39.76!REL;;chr16:88519669..8851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RID3B;;chr19:47615426..47615439,-!p5@ZC3H4!0.31!3.59!ZC3H4;;chr15:31619871..31619884,+!p8@KLF13!0.31!2.28!KLF13;;chr9:86593238..86593252,-!p3@HNRNPK!0.31!1.96!HNRPK;;chr12:12764917..12764931,+!p4@CREBL2!0.31!1.63!CREBL2;;chr19:9649253..9649265,-!p3@ZNF426!0.31!1.63!ZNF426;;chr21:30671145..30671156,+!p8@BACH1!0.31!1.30!BACH1;;chr9:125667739..125667770,-!p4@RC3H2!0.31!1.30!RC3H2;;chr10:3824229..3824253,-!p7@KLF6!0.31!1.30!KLF6;;chr12:57914481..57914509,+!p5@MBD6!0.31!1.30!MBD6;;chr2:28615716..28615733,+!p1@FOSL2!0.30!85.39!FOSL2;;chr5:16465902..16465917,-!p1@ZNF622!0.30!42.37!ZNF622;;chr1:59165724..59165751,-!p1@MYSM1!0.30!40.74!MYSM1;;chr7:6746529..6746591,-!p1@ZNF12!0.30!24.12!ZNF12;;chr11:130184753..130184824,-!p1@ZBTB44!0.30!24.12!ZBTB44;;chr19:9731872..9731915,-!p1@ZNF561!0.30!23.14!ZNF561;;chr16:68119250..68119293,+!p2@NFATC3!0.30!13.36!NFATC3;;chr17:7382935..7382961,-!p2@ZBTB4!0.30!10.43!ZBTB4;;chr19:45004556..45004581,-!p1@ZNF180!0.30!10.10!ZNF180;;chr5:178286925..178287007,+!p1@ZNF354B!0.30!9.78!ZNF354B;;chr19:58193338..58193386,+!p1@ZNF551,p2@ZNF776!0.30!8.15!ZNF551;;chr18:72922777..72922808,+!p2@TSHZ1!0.30!7.82!TSHZ1;;chr13:74708504..74708549,-!p1@KLF12!0.30!7.50!KLF12;;chr19:58331073..58331084,+!p3@ZNF587!0.30!6.19!ZNF587;;chr2:148778570..148778589,+!p4@MBD5!0.30!4.89!MBD5;;chr12:104532004..104532033,-!p4@NFYB!0.30!4.24!NFYB;;chr6:126102254..126102289,+!p5@NCOA7!0.30!4.24!NCOA7;;chr19:8942909..8942953,-!p2@ZNF558!0.30!3.59!ZNF558;;chr6:42419514..42419606,-!p1@TRERF1!0.30!3.26!TRERF1;;chr7:99070527..99070542,+!p2@ZNF789!0.30!3.26!ZNF789;;chr19:35417798..35417842,+!p1@ZNF30!0.30!2.28!ZNF30;;chr16:30569604..30569629,-!p3@ZNF764!0.30!1.96!ZNF764;;chr16:89787436..89787450,+!p4@ZNF276!0.30!1.63!ZNF276;;chr20:44600199..44600219,-!p3@ZNF335!0.30!1.63!ZNF335;;chr7:106826626..106826630,+!p3@HBP1!0.30!1.30!HBP1;;chr16:88752889..88752921,-!p1@SNAI3!0.30!1.30!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.30!1.30!HOXB2;;chr14:75747296..75747329,+!p4@FOS!0.30!0.98!FOS;;chr14:99737588..99737617,-!p4@BCL11B!0.30!0.98!BCL11B;;chr14:99738106..99738117,-!p9@BCL11B!0.30!0.98!BCL11B;;chr17:37934188..37934202,-!p8@IKZF3!0.30!0.98!IKZF3;;chr17:37934268..37934277,-!p10@IKZF3!0.30!0.98!IKZF3;;chr17:37934392..37934398,-!p11@IKZF3!0.30!0.98!IKZF3;;chr17:41738684..41738704,-!p2@MEOX1!0.30!0.98!MEOX1;;chr18:46477549..46477578,-!p7@SMAD7!0.30!0.98!SMAD7;;chr19:36204309..36204335,+!p1@ZBTB32!0.30!0.98!ZBTB32;;chr1:61542891..61542920,+!p12@NFIA!0.30!0.98!NFIA;;chr1:8586084..8586100,-!p20@RERE!0.30!0.98!RERE;;chr21:36421401..36421414,-!p16@RUNX1!0.30!0.98!RUNX1;;chr10:135121790..135121801,+!p7@ZNF511!0.30!0.98!ZNF511;;chr10:3823938..3823954,-!p13@KLF6!0.30!0.98!KLF6;;chr10:3824206..3824226,-!p10@KLF6!0.30!0.98!KLF6;;chr10:3824309..3824321,-!p15@KLF6!0.30!0.98!KLF6;;chr11:113930477..113930488,+!p4@ZBTB16!0.30!0.98!ZBTB16;;chr12:57914700..57914737,+!p7@MBD6!0.30!0.98!MBD6;;chr13:41593392..41593403,-!p7@ELF1!0.30!0.98!ELF1;;chr2:157186741..157186759,-!p25@NR4A2!0.30!0.98!NR4A2;;chr2:157189298..157189305,-!p23@NR4A2!0.30!0.98!NR4A2;;chr2:157189317..157189325,-!p8@NR4A2!0.30!0.98!NR4A2;;chr2:214016899..214016926,-!p10@IKZF2!0.30!0.98!IKZF2;;chr2:214017053..214017065,-!p16@IKZF2!0.30!0.98!IKZF2;;chr2:242556880..242556899,-!p5@THAP4!0.30!0.98!THAP4;;chr2:242556900..242556916,-!p6@THAP4!0.30!0.98!THAP4;;chr3:101546889..101546895,+!p6@NFKBIZ!0.30!0.98!NFKBIZ;;chr3:101546918..101546929,+!p4@NFKBIZ!0.30!0.98!NFKBIZ;;chr3:18463329..18463336,-!p15@SATB1!0.30!0.98!SATB1;;chr3:18480192..18480198,-!p22@SATB1!0.30!0.98!SATB1;;chr3:18486740..18486760,-!p10@SATB1!0.30!0.98!SATB1;;chr3:71179687..71179696,-!p54@FOXP1!0.30!0.98!FOXP1;;chr3:71355138..71355149,-!p41@FOXP1!0.30!0.98!FOXP1;;chr4:109087991..109087996,-!p50@LEF1!0.30!0.98!LEF1;;chr4:109089050..109089067,-!p26@LEF1!0.30!0.98!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.30!0.98!LEF1;;chr4:109089515..109089523,-!p31@LEF1!0.30!0.98!LEF1;;chr4:109089820..109089825,-!p35@LEF1!0.30!0.98!LEF1;;chr4:149363662..149363688,-!p6@NR3C2!0.30!0.98!NR3C2;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11780-124A7
 |is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
+|library_id=CNhs13238
+|library_id_phase_based=2:CNhs13238
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11780
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11780
 |name=CD4+CD25+CD45RA+ naive regulatory T cells, donor1
 |namespace=
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13238,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=0.9014
 |sample_age=25
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11780-124A7;search_select_hide=table117:FF:11780-124A7
 }}

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FF:11780-124A7: Difference between revisions

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Latest revision as of 18:19, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0