FFCP PHASE1:Hg19::chr13:49975421..49975435,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81617 | |EntrezGene=81617 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20290 | |HGNC=20290 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H9S4,E9PEW4 | |UniProt=Q9H9S4,E9PEW4 | ||
|association_with_transcript=299bp_to_ENST00000355854,ENST00000378341,NM_030925,uc001vcw.2_5end | |association_with_transcript=299bp_to_ENST00000355854,ENST00000378341,NM_030925,uc001vcw.2_5end | ||
|cluster_id=chr13:49975421..49975435,- | |||
|description=CAGE_peak_10_at_CAB39L_5end | |description=CAGE_peak_10_at_CAB39L_5end | ||
|id=chr13:49975421..49975435,- | |id=chr13:49975421..49975435,- | ||
|ontology_enrichment_celltype=CL:0000946;1.78e-15;1!CL:0000786;1.78e-15;1 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000946;1.78e-15;1!CL:0000786;1.78e-15;1 | ||
|ontology_enrichment_disease=DOID:3371;5.55e-16;1!DOID:4549;5.55e-16;1!DOID:5861;5.55e-16;1!DOID:6496;5.55e-16;1!DOID:114;2.15e-08;2 | |ontology_enrichment_celltype_v019_2=CL:0000946,3.66e-15,1;CL:0000786,3.66e-15,1;CL:0000980,3.66e-15,1;CL:0000785,3.08e-08,2;CL:0000955,3.08e-08,2;CL:0000818,3.08e-08,2;CL:0000954,3.08e-08,2;CL:0000816,3.08e-08,2 | ||
|ontology_enrichment_uberon=UBERON:0002298;8.89e-22;6!UBERON:0001896;8.65e-20;3!UBERON:0005290;8.65e-20;3!UBERON:0004733;3.24e-11;12!UBERON:0002028;3.24e-11;12!UBERON:0004732;2.13e-10;13!UBERON:0001255;2.15e-08;2!UBERON:0000341;2.15e-08;2!UBERON:0001873;2.15e-08;2!UBERON:0002148;2.15e-08;2!UBERON:0006331;2.15e-08;2!UBERON:0009662;2.15e-08;2!UBERON:0001556;2.15e-08;2!UBERON:0000125;3.24e-07;9!UBERON:0002308;3.24e-07;9 | |ontology_enrichment_development_v019=CL:0000954;2.15e-08;2!UBERON:0010122;2.15e-08;2 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;5.55e-16;1!DOID:4549;5.55e-16;1!DOID:5861;5.55e-16;1!DOID:6496;5.55e-16;1!DOID:114;2.15e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,5.56e-16,1;DOID:4549,5.56e-16,1;DOID:5861,5.56e-16,1;DOID:6496,5.56e-16,1;DOID:114,1.86e-08,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002298;8.89e-22;6!UBERON:0001896;8.65e-20;3!UBERON:0005290;8.65e-20;3!UBERON:0004733;3.24e-11;12!UBERON:0002028;3.24e-11;12!UBERON:0004732;2.13e-10;13!UBERON:0001255;2.15e-08;2!UBERON:0000341;2.15e-08;2!UBERON:0001873;2.15e-08;2!UBERON:0002148;2.15e-08;2!UBERON:0006331;2.15e-08;2!UBERON:0009662;2.15e-08;2!UBERON:0001556;2.15e-08;2!UBERON:0000125;3.24e-07;9!UBERON:0002308;3.24e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,1.46e-21,6;UBERON:0001896,1.15e-19,3;UBERON:0005290,1.15e-19,3;UBERON:0010096,1.15e-19,3;UBERON:0003076,2.48e-15,15;UBERON:0003057,2.48e-15,15;UBERON:0007023,6.66e-14,114;UBERON:0004733,4.14e-11,12;UBERON:0002028,4.14e-11,12;UBERON:0007277,4.14e-11,12;UBERON:0004732,2.67e-10,13;UBERON:0001049,1.09e-08,56;UBERON:0005068,1.09e-08,56;UBERON:0006241,1.09e-08,56;UBERON:0007135,1.09e-08,56;UBERON:0001873,1.61e-08,2;UBERON:0010122,1.61e-08,2;UBERON:0001255,2.00e-08,2;UBERON:0001556,2.00e-08,2;UBERON:0000341,2.67e-08,2;UBERON:0002148,2.87e-08,2;UBERON:0006331,2.87e-08,2;UBERON:0009662,2.87e-08,2;UBERON:0000125,3.24e-07,9;UBERON:0002308,3.24e-07,9 | |||
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| ||
|short_description=p10@CAB39L | |short_description=p10@CAB39L | ||
}} | }} |
Latest revision as of 16:49, 17 September 2015
Short description: | p10@CAB39L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_CAB39L_5end |
Coexpression cluster: | NA |
Association with transcript: | 299bp_to_ENST00000355854, ENST00000378341, NM_030925, uc001vcw.2_5end |
EntrezGene: | CAB39L |
HGNC: | 20290 |
UniProt: | Q9H9S4E9PEW4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 3.66e-15 | 1 |
plasma cell | 3.66e-15 | 1 |
plasmablast | 3.66e-15 | 1 |
mature B cell | 3.08e-08 | 2 |
pre-B-II cell | 3.08e-08 | 2 |
transitional stage B cell | 3.08e-08 | 2 |
small pre-B-II cell | 3.08e-08 | 2 |
immature B cell | 3.08e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
brainstem | 1.46e-21 | 6 |
medulla oblongata | 1.15e-19 | 3 |
myelencephalon | 1.15e-19 | 3 |
future myelencephalon | 1.15e-19 | 3 |
posterior neural tube | 2.48e-15 | 15 |
chordal neural plate | 2.48e-15 | 15 |
adult organism | 6.66e-14 | 114 |
segmental subdivision of hindbrain | 4.14e-11 | 12 |
hindbrain | 4.14e-11 | 12 |
presumptive hindbrain | 4.14e-11 | 12 |
segmental subdivision of nervous system | 2.67e-10 | 13 |
neural tube | 1.09e-08 | 56 |
neural rod | 1.09e-08 | 56 |
future spinal cord | 1.09e-08 | 56 |
neural keel | 1.09e-08 | 56 |
caudate nucleus | 1.61e-08 | 2 |
future caudate nucleus | 1.61e-08 | 2 |
urinary bladder | 2.00e-08 | 2 |
lower urinary tract | 2.00e-08 | 2 |
throat | 2.67e-08 | 2 |
locus ceruleus | 2.87e-08 | 2 |
brainstem nucleus | 2.87e-08 | 2 |
hindbrain nucleus | 2.87e-08 | 2 |
neural nucleus | 3.24e-07 | 9 |
nucleus of brain | 3.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 5.56e-16 | 1 |
extraosseous chondrosarcoma | 5.56e-16 | 1 |
myxoid chondrosarcoma | 5.56e-16 | 1 |
extraskeletal myxoid chondrosarcoma | 5.56e-16 | 1 |
heart disease | 1.86e-08 | 2 |