FFCP PHASE1:Hg19::chr7:45952925..45952936,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3486 | |EntrezGene=3486 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |HGNC=5472 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-249bp_to_S56205_5end | |association_with_transcript=-249bp_to_S56205_5end | ||
|cluster_id=chr7:45952925..45952936,- | |||
|coexpression_cluster_id=C223 | |coexpression_cluster_id=C223 | ||
|description=CAGE_peak_14_at_IGFBP3_5end | |description=CAGE_peak_14_at_IGFBP3_5end | ||
|id=chr7:45952925..45952936,- | |id=chr7:45952925..45952936,- | ||
|ontology_enrichment_celltype=CL:0002620;1.92e-18;23!CL:0000153;3.60e-12;9!CL:0000447;3.60e-12;9!CL:0002595;1.78e-09;5!CL:0002615;5.11e-09;3!CL:0000138;6.59e-09;6!CL:0000499;3.35e-07;28!CL:0000136;3.69e-07;13!CL:0000327;5.86e-07;15 | |ontology_enrichment_celltype=CL:0000055!3.43e-10!180;CL:0000057!1.27e-08!75;CL:0000359!3.55e-08!32;CL:0002620!3.70e-08!23;CL:0002334!1.48e-07!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;1.92e-18;23!CL:0000153;3.60e-12;9!CL:0000447;3.60e-12;9!CL:0002595;1.78e-09;5!CL:0002615;5.11e-09;3!CL:0000138;6.59e-09;6!CL:0000499;3.35e-07;28!CL:0000136;3.69e-07;13!CL:0000327;5.86e-07;15 | ||
|ontology_enrichment_disease=DOID:17;2.42e-14;5!DOID:450;2.42e-14;5!DOID:66;2.42e-14;5!DOID:423;2.42e-14;5!DOID:0080000;2.42e-14;5!DOID:11722;2.42e-14;5 | |ontology_enrichment_celltype_v019_2=CL:0002620,1.61e-18,23;CL:0000057,1.68e-12,76;CL:0000153,3.59e-12,9;CL:0000447,3.59e-12,9;CL:0002595,2.14e-09,5;CL:0000048,2.38e-09,427;CL:0000723,4.94e-09,433;CL:0002615,6.23e-09,3;CL:0000058,6.69e-09,6;CL:0000138,6.69e-09,6;CL:0000034,1.27e-08,441;CL:0000136,5.57e-08,15;CL:0000499,2.89e-07,28;CL:0000327,5.84e-07,15;CL:0000134,8.92e-07,354 | ||
|ontology_enrichment_uberon=UBERON:0004457;1.33e-14;9!UBERON:0000042;1.33e-14;9!UBERON:0002097;1.43e-11;41!UBERON:0003688;1.88e-11;6!UBERON:0002358;1.88e-11;6!UBERON:0003684;1.88e-11;6!UBERON:0001178;1.88e-11;6!UBERON:0003834;1.78e-09;5!UBERON:0001533;1.78e-09;5!UBERON:0002199;3.86e-09;46!UBERON:0002416;3.86e-09;46!UBERON:0003513;9.29e-07;7 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:17!4.73e-07!5;DOID:450!4.73e-07!5;DOID:66!4.73e-07!5;DOID:423!4.73e-07!5;DOID:0080000!4.73e-07!5;DOID:11722!4.73e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.42e-14;5!DOID:450;2.42e-14;5!DOID:66;2.42e-14;5!DOID:423;2.42e-14;5!DOID:0080000;2.42e-14;5!DOID:11722;2.42e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.67e-14,5;DOID:450,1.67e-14,5;DOID:66,1.67e-14,5;DOID:423,1.67e-14,5;DOID:0080000,1.67e-14,5;DOID:11722,1.67e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0001637!6.90e-08!42;UBERON:0003509!6.90e-08!42;UBERON:0004572!6.90e-08!42;UBERON:0004573!1.13e-07!33;UBERON:0004571!1.13e-07!33;UBERON:0003688!1.40e-07!6;UBERON:0002358!1.40e-07!6;UBERON:0003684!1.40e-07!6;UBERON:0001178!1.40e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.33e-14;9!UBERON:0000042;1.33e-14;9!UBERON:0002097;1.43e-11;41!UBERON:0003688;1.88e-11;6!UBERON:0002358;1.88e-11;6!UBERON:0003684;1.88e-11;6!UBERON:0001178;1.88e-11;6!UBERON:0003834;1.78e-09;5!UBERON:0001533;1.78e-09;5!UBERON:0002199;3.86e-09;46!UBERON:0002416;3.86e-09;46!UBERON:0003513;9.29e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.70e-14,41;UBERON:0002199,3.51e-12,46;UBERON:0002416,3.51e-12,46;UBERON:0003688,2.09e-11,6;UBERON:0002358,2.09e-11,6;UBERON:0003684,2.09e-11,6;UBERON:0001178,2.09e-11,6;UBERON:0004457,1.18e-10,12;UBERON:0000042,1.18e-10,12;UBERON:0003834,2.14e-09,5;UBERON:0001533,2.14e-09,5 | |||
|phase1_expression=1.09007027562334,2.5692062866918,2.39622486963151,2.00146596706261,1.34088328328186,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,25.6621798193042,15.0401373190767,27.3759920835957,0,14.1124112387764,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0,0.286836620748814,0,0.560677600142307,2.1349799145941,1.2333377420858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919463387397059,0,0.113432183160021,4.48474089222155,1.92201649936711,2.7551147150743,9.00273288253207,1.23663035086127,2.06112432036503,4.46680455195816,1.35021065793013,1.75386609290158,4.54380793639406,3.86609574297657,0,9.58525899794859,4.23158812556089,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,0,1.92972281457866,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0.26593811658487,0,0,0,0,0,0.542621605391443,0,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,2.29723871668228,0,1.15825045334063,1.2328579353023,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831883446123229,1.42743191037729,0.473107245101804,0.35142424497814,0,2.27407504055985,0,0.664225598535437,0.553107505625109,0.0868836144680828,0.195801157462741,0,0,0,0,0.909382714338778,0,0,1.48864684691266,0.153461973288062,3.92924132206303,0.896974044789907,2.04682899626681,1.60853921143608,1.48418066444991,0,0.532685175939381,0.0821271560138091,0,0.348631135379878,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0,0,0.170093705276516,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0.464845549297286,2.51849877464512,0,0,0,0,1.8532421910392,3.00562262158182,0,0,0,0,0,0.318203247925937,0.78494864019923,0,0,0,0,1.58510321173008,0.421258456238981,0,1.46228093778771,1.05650146756755,0,0,1.13008116620243,0,4.64407282668854,14.4688792133742,0,0,0.608731130888112,0,0,0,0,0.35667105148125,0,2.32218398827431,4.61012850143863,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,1.90995587790152,0.890894042497916,2.76444631889309,0,0,0,0,0,0.597743964753209,0,0,0,0,6.22079175323615,0,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0.341826167541004,0,0,0,3.50901275705111,0.183195186803725,5.86338253620498,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,1.90915712168644,0,0.0870592065804026,0,1.20390222730132,0,0,0,0.193978032976839,0,0.677942222341597,0,0,0,0.195551382734803,0,0,4.99524023955326,0,0,0,0,0,0,0.271808412147228,0,0.305994652908965,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.720599767084807,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0.335434687599266,0.157611414598396,0.0524545881349981,0,1.6135860539956,0,0,0,0,4.3439968140297,0.864221491201268,0.326587360109409,0,0,0,0,0.146552233678082,0,0,0,0.513260513652988,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467426619694449,0,0.568209015825267,1.25783950876288,3.55924488638614,0.228840068396924,1.05861646634267,0.310874401165561,0,0,0.449803112163605,0,0,0,0,0,2.28483127301277,0.406870733204662,0,0.107410557042488,0,0.796191777397232,0,1.03018711554838,0,1.26184898228651,0,0,0,0.906823702049089,0,0,0.71635536432595,0.617602894321944,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637724760305049,0.123935764259002,0,0.636008701306837,0,0,0,0.918736432059601,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0.462102664601353,0,0,0,0.150420656698515,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0.351742488719241,1.40538670403555,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,3.0229862770607,12.8992955729504,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0.31020638566432,0,0.782988022584546,0,0,0,0.102662806856247,0,1.45713297917742,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,1.86919826156599,0,0,0,0.357107877211315,0,0.0802413666891683,0.730336388246517,0,0,0,0,0,0,0,4.62175628631418,4.75889218336168,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.639701945702943,0,0,0,0,0,0,0.435433495793923,1.02669990325584,0,0.0717222053926763,0.332660356546013,0,0.320182037633146,0,0.538951212639521,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=1.09007027562334,2.5692062866918,2.39622486963151,2.00146596706261,1.34088328328186,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,25.6621798193042,15.0401373190767,27.3759920835957,0,14.1124112387764,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0,0.286836620748814,0,0.560677600142307,2.1349799145941,1.2333377420858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919463387397059,0,0.113432183160021,4.48474089222155,1.92201649936711,2.7551147150743,9.00273288253207,1.23663035086127,2.06112432036503,4.46680455195816,1.35021065793013,1.75386609290158,4.54380793639406,3.86609574297657,0,9.58525899794859,4.23158812556089,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,0,1.92972281457866,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0.26593811658487,0,0,0,0,0,0.542621605391443,0,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0.239624855491583,2.29723871668228,0,1.15825045334063,1.2328579353023,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831883446123229,1.42743191037729,0.473107245101804,0.35142424497814,0,2.27407504055985,0,0.664225598535437,0.553107505625109,0.0868836144680828,0.195801157462741,0,0,0,0,0.909382714338778,0,0,1.48864684691266,0.153461973288062,3.92924132206303,0.896974044789907,2.04682899626681,1.60853921143608,1.48418066444991,0,0.532685175939381,0.0821271560138091,0,0.348631135379878,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0,0,0.170093705276516,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0.464845549297286,2.51849877464512,0,0,0,0,1.8532421910392,3.00562262158182,0,0,0,0,0,0.318203247925937,0.78494864019923,0,0,0,0,1.58510321173008,0.421258456238981,0,1.46228093778771,1.05650146756755,0,0,1.13008116620243,0,4.64407282668854,14.4688792133742,0,0,0.608731130888112,0,0,0,0,0.35667105148125,0,2.32218398827431,4.61012850143863,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,1.90995587790152,0.890894042497916,2.76444631889309,0,0,0,0,0,0.597743964753209,0,0,0,0,6.22079175323615,0,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.153900517007594,0.341826167541004,0,0,0,3.50901275705111,0.183195186803725,5.86338253620498,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,1.90915712168644,0,0.0870592065804026,0,1.20390222730132,0,0,0,0.193978032976839,0,0.677942222341597,0,0,0,0.195551382734803,0,0,4.99524023955326,0,0,0,0,0,0,0.271808412147228,0,0.305994652908965,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.720599767084807,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0.335434687599266,0.157611414598396,0.0524545881349981,0,1.6135860539956,0,0,0,0,4.3439968140297,0.864221491201268,0.326587360109409,0,0,0,0,0.146552233678082,0,0,0,0.513260513652988,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467426619694449,0,0.568209015825267,1.25783950876288,3.55924488638614,0.228840068396924,1.05861646634267,0.310874401165561,0,0,0.449803112163605,0,0,0,0,0,2.28483127301277,0.406870733204662,0,0.107410557042488,0,0.796191777397232,0,1.03018711554838,0,1.26184898228651,0,0,0,0.906823702049089,0,0,0.71635536432595,0.617602894321944,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637724760305049,0.123935764259002,0,0.636008701306837,0,0,0,0.918736432059601,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0.462102664601353,0,0,0,0.150420656698515,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0.351742488719241,1.40538670403555,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,3.0229862770607,12.8992955729504,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0.31020638566432,0,0.782988022584546,0,0,0,0.102662806856247,0,1.45713297917742,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,1.86919826156599,0,0,0,0.357107877211315,0,0.0802413666891683,0.730336388246517,0,0,0,0,0,0,0,4.62175628631418,4.75889218336168,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.639701945702943,0,0,0,0,0,0,0.435433495793923,1.02669990325584,0,0.0717222053926763,0.332660356546013,0,0.320182037633146,0,0.538951212639521,0,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p14@IGFBP3 | |short_description=p14@IGFBP3 | ||
}} | }} |
Latest revision as of 19:30, 18 September 2015
Short description: | p14@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -249bp_to_S56205_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.61e-18 | 23 |
fibroblast | 1.68e-12 | 76 |
GAG secreting cell | 3.59e-12 | 9 |
carbohydrate secreting cell | 3.59e-12 | 9 |
smooth muscle cell of the subclavian artery | 2.14e-09 | 5 |
multi fate stem cell | 2.38e-09 | 427 |
somatic stem cell | 4.94e-09 | 433 |
adipocyte of omentum tissue | 6.23e-09 | 3 |
chondroblast | 6.69e-09 | 6 |
chondrocyte | 6.69e-09 | 6 |
stem cell | 1.27e-08 | 441 |
fat cell | 5.57e-08 | 15 |
stromal cell | 2.89e-07 | 28 |
extracellular matrix secreting cell | 5.84e-07 | 15 |
mesenchymal cell | 8.92e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.70e-14 | 41 |
integument | 3.51e-12 | 46 |
integumental system | 3.51e-12 | 46 |
omentum | 2.09e-11 | 6 |
peritoneum | 2.09e-11 | 6 |
abdominal cavity | 2.09e-11 | 6 |
visceral peritoneum | 2.09e-11 | 6 |
cavity lining | 1.18e-10 | 12 |
serous membrane | 1.18e-10 | 12 |
thoracic segment blood vessel | 2.14e-09 | 5 |
subclavian artery | 2.14e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.67e-14 | 5 |
myotonic disease | 1.67e-14 | 5 |
muscle tissue disease | 1.67e-14 | 5 |
myopathy | 1.67e-14 | 5 |
muscular disease | 1.67e-14 | 5 |
myotonic dystrophy | 1.67e-14 | 5 |