FFCP PHASE1:Hg19::chr11:842826..842881,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7106 | |EntrezGene=7106 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11859 | |HGNC=11859 | ||
|TSSclassifier=strong | |||
|UniProt=A8MVV6,O14817 | |UniProt=A8MVV6,O14817 | ||
|association_with_transcript=2bp_to_ENST00000397396,NM_001025238,NM_001025239,NM_003271,uc001lsd.1,uc001lse.1,uc001lsf.1_5end | |association_with_transcript=2bp_to_ENST00000397396,NM_001025238,NM_001025239,NM_003271,uc001lsd.1,uc001lse.1,uc001lsf.1_5end | ||
|cluster_id=chr11:842826..842881,+ | |||
|coexpression_cluster_id=C3206 | |coexpression_cluster_id=C3206 | ||
|description=CAGE_peak_1_at_TSPAN4_5end | |description=CAGE_peak_1_at_TSPAN4_5end | ||
|id=chr11:842826..842881,+ | |id=chr11:842826..842881,+ | ||
|ontology_enrichment_celltype=CL:0000359;3.29e-09;32!CL:0000192;5.00e-09;43!CL:0000187;1.10e-07;55!CL:0002620;2.21e-07;23!CL:0000057;3.03e-07;73!CL:0002320;9.96e-07;188 | |ontology_enrichment_celltype=CL:0000055!4.20e-34!180;CL:0000222!4.56e-21!119;CL:0000548!2.65e-18!679;CL:0000004!2.65e-18!679;CL:0000255!2.65e-18!679;CL:0000057!6.49e-18!75;CL:0000012!1.33e-17!682;CL:0002371!1.56e-16!591;CL:0000144!1.09e-15!625;CL:0000220!1.27e-15!246;CL:0002321!4.10e-15!248;CL:0000183!5.48e-14!59;CL:0000680!1.02e-13!57;CL:0000056!1.02e-13!57;CL:0000355!1.02e-13!57;CL:0000187!1.55e-12!54;CL:0000192!1.39e-11!42;CL:0000514!1.39e-11!42;CL:0000393!4.88e-10!60;CL:0000211!4.88e-10!60;CL:0000359!1.27e-09!32;CL:0002620!2.17e-07!23;CL:0000048!2.26e-07!430;CL:0000213!2.85e-07!57;CL:0000215!2.85e-07!57;CL:0000723!4.71e-07!436;CL:0000003!6.92e-07!722 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;3.29e-09;32!CL:0000192;5.00e-09;43!CL:0000187;1.10e-07;55!CL:0002620;2.21e-07;23!CL:0000057;3.03e-07;73!CL:0002320;9.96e-07;188 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.07e-22,121;CL:0000057,4.93e-18,76;CL:0002321,1.13e-15,250;CL:0000680,3.42e-14,58;CL:0000056,3.42e-14,58;CL:0000355,3.42e-14,58;CL:0000187,5.29e-13,55;CL:0000192,4.60e-12,43;CL:0000514,4.60e-12,43;CL:0000393,1.85e-10,61;CL:0000211,1.85e-10,61;CL:0000359,1.27e-09,32;CL:0000213,1.86e-07,58;CL:0000215,1.86e-07,58;CL:0000048,2.03e-07,427;CL:0002620,2.17e-07,23;CL:0000723,4.26e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;5.00e-09;43!CL:0000355;7.27e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001637;9.22e-08;42!UBERON:0003509;9.22e-08;42!UBERON:0004572;9.22e-08;42!UBERON:0004573;1.18e-07;33!UBERON:0004571;1.18e-07;33!UBERON:0002384;2.45e-07;198!UBERON:0001737;4.50e-07;9!UBERON:0001557;4.50e-07;9 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.79e-16!83;UBERON:0002329!4.79e-16!83;UBERON:0003077!4.79e-16!83;UBERON:0003059!4.79e-16!83;UBERON:0007282!4.79e-16!83;UBERON:0009618!4.79e-16!83;UBERON:0007285!4.79e-16!83;UBERON:0004290!9.10e-16!70;UBERON:0005256!1.97e-15!143;UBERON:0000926!4.88e-15!448;UBERON:0004120!4.88e-15!448;UBERON:0006603!4.88e-15!448;UBERON:0002100!2.26e-14!216;UBERON:0000486!2.75e-14!82;UBERON:0003104!1.57e-13!238;UBERON:0009142!1.57e-13!238;UBERON:0001134!3.82e-13!61;UBERON:0002036!3.82e-13!61;UBERON:0003082!3.82e-13!61;UBERON:0002385!1.42e-12!63;UBERON:0001015!1.42e-12!63;UBERON:0000383!1.42e-12!63;UBERON:0002049!3.97e-12!79;UBERON:0007798!3.97e-12!79;UBERON:0003914!3.98e-12!118;UBERON:0000055!3.24e-11!69;UBERON:0000490!3.81e-11!138;UBERON:0004872!5.91e-11!84;UBERON:0001981!1.61e-10!60;UBERON:0007500!1.61e-10!60;UBERON:0004537!1.61e-10!60;UBERON:0006965!1.61e-10!60;UBERON:0001637!1.95e-10!42;UBERON:0003509!1.95e-10!42;UBERON:0004572!1.95e-10!42;UBERON:0003102!1.18e-08!95;UBERON:0002199!1.67e-08!45;UBERON:0002416!1.67e-08!45;UBERON:0000468!1.71e-08!659;UBERON:0004573!1.85e-08!33;UBERON:0004571!1.85e-08!33;UBERON:0002204!5.51e-08!167;UBERON:0002097!3.77e-07!40;UBERON:0000467!3.93e-07!625;UBERON:0004535!4.13e-07!110;UBERON:0001737!4.54e-07!9;UBERON:0000480!5.74e-07!626;UBERON:0001009!9.63e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;9.22e-08;42!UBERON:0003509;9.22e-08;42!UBERON:0004572;9.22e-08;42!UBERON:0004573;1.18e-07;33!UBERON:0004571;1.18e-07;33!UBERON:0002384;2.45e-07;198!UBERON:0001737;4.50e-07;9!UBERON:0001557;4.50e-07;9 | |||
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| ||
|short_description=p1@TSPAN4 | |short_description=p1@TSPAN4 | ||
}} | }} |
Latest revision as of 20:02, 24 September 2015
Short description: | p1@TSPAN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TSPAN4_5end |
Coexpression cluster: | C3206_Mesenchymal_Osteoblast_tenocyte_Synoviocyte_Alveolar_Fibroblast_Smooth |
Association with transcript: | 2bp_to_ENST00000397396, NM_001025238, NM_001025239, NM_003271, uc001lsd.1, uc001lse.1, uc001lsf.1_5end |
EntrezGene: | TSPAN4 |
HGNC: | 11859 |
UniProt: | A8MVV6O14817 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.07e-22 | 121 |
fibroblast | 4.93e-18 | 76 |
embryonic cell | 1.13e-15 | 250 |
muscle precursor cell | 3.42e-14 | 58 |
myoblast | 3.42e-14 | 58 |
multi-potent skeletal muscle stem cell | 3.42e-14 | 58 |
muscle cell | 5.29e-13 | 55 |
smooth muscle cell | 4.60e-12 | 43 |
smooth muscle myoblast | 4.60e-12 | 43 |
electrically responsive cell | 1.85e-10 | 61 |
electrically active cell | 1.85e-10 | 61 |
vascular associated smooth muscle cell | 1.27e-09 | 32 |
lining cell | 1.86e-07 | 58 |
barrier cell | 1.86e-07 | 58 |
multi fate stem cell | 2.03e-07 | 427 |
skin fibroblast | 2.17e-07 | 23 |
somatic stem cell | 4.26e-07 | 433 |