FFCP PHASE1:Hg19::chr1:201368707..201368760,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:201368707..201368760,-
|short_description=p3@LAD1
|description=CAGE_peak_3_at_LAD1_5end
|association_with_transcript=0bp_to_ENST00000391967_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3898 | |EntrezGene=3898 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6472 | |HGNC=6472 | ||
|TSSclassifier=strong | |||
|UniProt=O00515 | |UniProt=O00515 | ||
|association_with_transcript=0bp_to_ENST00000391967_5end | |||
|cluster_id=chr1:201368707..201368760,- | |||
|coexpression_cluster_id=C543 | |||
|description=CAGE_peak_3_at_LAD1_5end | |||
|id=chr1:201368707..201368760,- | |||
|ontology_enrichment_celltype=CL:0000066!8.65e-28!254;CL:0002076!3.41e-23!43;CL:0000223!2.21e-19!59;CL:0002368!6.59e-12!13;CL:0002251!2.23e-11!21;CL:0002202!1.98e-08!9;CL:0002632!1.98e-08!9;CL:0002159!1.15e-07!13;CL:1000449!3.11e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.71e-20;42!CL:0002368;4.52e-14;13!CL:0002251;6.08e-12;20!CL:0002202;6.31e-10;9!CL:0002632;6.31e-10;9!CL:0002159;2.39e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.17e-28,253;CL:0002076,1.78e-26,42;CL:0000223,9.92e-21,58;CL:0002368,3.70e-14,13;CL:0002251,6.77e-12,20;CL:0002202,5.75e-10,9;CL:0002632,5.75e-10,9;CL:0002159,2.30e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000223;5.79e-11;58 | |||
|ontology_enrichment_disease=DOID:305!1.18e-13!106;DOID:1749!3.35e-12!14;DOID:0050687!3.78e-09!143;DOID:299!1.06e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.71e-14;14!DOID:299;9.14e-11;25 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.65e-14,14;DOID:305,2.27e-13,106;DOID:299,8.59e-11,25;DOID:0050687,2.49e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.93e-26!169;UBERON:0000925!2.93e-26!169;UBERON:0006595!2.93e-26!169;UBERON:0001007!3.53e-20!155;UBERON:0001555!3.53e-20!155;UBERON:0007026!3.53e-20!155;UBERON:0004921!8.28e-18!129;UBERON:0004185!8.28e-18!129;UBERON:0000464!1.05e-17!104;UBERON:0000466!5.12e-17!126;UBERON:0000077!3.09e-16!130;UBERON:0001004!2.27e-14!72;UBERON:0005911!4.19e-12!82;UBERON:0000161!4.58e-12!35;UBERON:0001008!1.79e-11!45;UBERON:0006554!4.42e-11!44;UBERON:0005177!5.91e-11!107;UBERON:0001041!9.19e-11!98;UBERON:0000058!1.67e-10!26;UBERON:0005153!3.91e-10!37;UBERON:0002553!9.15e-10!70;UBERON:0000166!1.43e-09!21;UBERON:0003064!2.37e-09!37;UBERON:0005178!3.69e-09!34;UBERON:0002224!3.69e-09!34;UBERON:0000065!4.00e-09!53;UBERON:0005181!1.05e-08!35;UBERON:0000344!2.11e-08!12;UBERON:0000080!2.20e-08!18;UBERON:0002120!2.20e-08!18;UBERON:0004875!2.20e-08!18;UBERON:0005721!2.20e-08!18;UBERON:0005754!2.20e-08!18;UBERON:0007297!2.20e-08!18;UBERON:0004876!3.11e-08!20;UBERON:0000062!5.19e-08!511;UBERON:0009569!5.51e-08!113;UBERON:0006555!1.10e-07!17;UBERON:0005103!1.10e-07!17;UBERON:0000083!1.10e-07!17;UBERON:0009201!1.10e-07!17;UBERON:0004819!1.10e-07!17;UBERON:0006553!1.10e-07!17;UBERON:0003074!1.10e-07!17;UBERON:0003060!1.10e-07!17;UBERON:0003887!1.91e-07!21;UBERON:0004211!3.11e-07!16;UBERON:0001285!3.11e-07!16;UBERON:0007684!3.11e-07!16;UBERON:0003220!3.11e-07!16;UBERON:0004208!3.11e-07!16;UBERON:0005157!3.88e-07!51;UBERON:0003104!4.04e-07!238;UBERON:0009142!4.04e-07!238;UBERON:0000165!4.50e-07!28;UBERON:0000930!4.50e-07!28;UBERON:0007196!4.80e-07!14;UBERON:0001558!4.80e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.57e-11;33!UBERON:0001555;2.10e-09;54!UBERON:0005178;7.30e-09;34!UBERON:0002224;7.30e-09;34!UBERON:0000344;7.36e-09;20!UBERON:0005911;8.25e-09;36!UBERON:0006554;1.02e-08;30!UBERON:0001008;1.02e-08;30!UBERON:0005181;3.30e-08;35!UBERON:0005409;4.19e-08;22!UBERON:0004807;5.85e-08;22!UBERON:0007196;8.87e-08;15!UBERON:0001558;8.87e-08;15!UBERON:0000365;1.14e-07;5!UBERON:0000161;1.23e-07;19!UBERON:0000166;1.23e-07;19!UBERON:0000974;1.47e-07;6!UBERON:0000165;3.68e-07;28!UBERON:0000160;6.50e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.18e-24,160;UBERON:0000925,1.18e-24,160;UBERON:0006595,1.18e-24,160;UBERON:0001007,4.12e-18,145;UBERON:0001555,4.12e-18,145;UBERON:0007026,4.12e-18,145;UBERON:0004921,1.41e-15,118;UBERON:0001004,4.02e-13,74;UBERON:0006554,1.39e-12,47;UBERON:0001008,3.77e-12,48;UBERON:0005177,9.27e-11,101;UBERON:0000161,2.05e-10,36;UBERON:0005911,3.63e-10,82;UBERON:0005153,4.72e-10,37;UBERON:0005178,1.02e-09,34;UBERON:0002224,1.02e-09,34;UBERON:0005181,2.81e-09,35;UBERON:0000344,7.67e-09,20;UBERON:0005157,9.89e-09,47;UBERON:0000065,1.08e-08,54;UBERON:0000166,1.22e-08,22;UBERON:0001041,1.43e-08,87;UBERON:0005631,6.19e-08,14;UBERON:0000158,6.19e-08,14;UBERON:0007196,8.67e-08,15;UBERON:0001558,8.67e-08,15;UBERON:0000365,1.11e-07,5;UBERON:0009569,1.92e-07,112;UBERON:0000915,2.32e-07,52;UBERON:0000160,6.95e-07,17;UBERON:0000165,9.59e-07,29;UBERON:0000930,9.59e-07,29;UBERON:0005409,9.87e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,19.4129809836192,100.48336818803,13.980247816331,10.5506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.154816123316076,17.4690032650996,26.8073267712643,21.0759785795069,0,0,0,0,0,0,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,30.236508928281,30.4043243083232,0.649094787309367,0.870648686496336,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.7597122756878,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5282597214308,11.4553370648151,10.0381608386151,0.609868530647977,1.45782745153634,0.69716365721711,0.725627385107593,0.504641701751257,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05861847192275,0,11.0847788262712,25.8524032492525,17.0899253099772,16.7585085736939,0,0,0,0,0,0,0,0,7.90204397959275,7.72637545885385,0,0,0,13.1227367581488,3.86358894857377,5.81277898693785,5.28395283946805,8.4283842169049,14.9519244874432,0,0,0.207328115540772,0,0.12624243342638,0,0,0,3.4214489204541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6094650006191,0,7.55975733324201,0,0,0,0,0,0,0,0,0,0,0,0,6.64726972753922,6.21570057940183,19.1528456986664,0,0,0,9.92639148396306,2.6185214615501,6.27479815341484,4.38417673959782,0.422206515571503,1.13733384070897,0,0.863663664408557,0,0.541892875087706,5.01689773854853,8.6657932835313,11.6350641250021,3.35812132083267,0,0,0,0,0,2.57602529119306,0,0,18.9507627538737,12.3511446746939,0,0,0,0,0,0,0,0,0,14.5450725517661,10.5704537050808,4.72167036229961,20.7373450753877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5124245160432,26.1417887458957,11.9780083347455,2.91845782408015,24.9693116149313,35.3790098902014,30.1532504404939,9.6483828086923,0,0,0,0,0,0,0,0,0,0,10.5367292871844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.8724378138878,0,0,0,0,10.027268358983,1.78178808499583,19.0439635301524,0,0,0,0,0,0.597743964753209,3.31540698637377,0,0,0,0,41.788783283507,24.1678585812072,0,3.84709281984041,0,0,0,0,0,10.1566826823241,3.58585999984402,0,44.8346186244869,12.9669361649311,10.4010579977892,0,0,0,0,0,0,0,0,0,0,17.0096968019896,3.46276163267087,0,18.4451123510448,7.98843035246972,5.86695808378844,1.5950057986596,1.28236630762607,2.13213910407454,0,0,0,0,0,0,0,0,0,15.0174183506416,10.1774211432437,0,15.9241908972561,4.15750553165694,8.55442202907076,0,0,0,0,0,0,0,13.6965233252463,0,7.49710365413842,3.62972148145992,0,0,0,0,0,0,0,0,1.99226682220855,0,7.11594927174037,21.8523046234062,15.2353611515704,1.22308667769421,0,0,0,0,20.2707044460797,0,1.80784592624426,0,0,0,4.69323318563527,4.40873511383435,5.12287187374446,0,28.529902596513,0,0,0,0,20.9767690808948,0,0,0,0,0,0,0,0,0,0,0,0,2.39614800598789,0,0,0,0,0,0.315132729228895,0,0.404421263125109,1.27955725969173,0,0,0,1.60753148465019,2.61324929534744,2.9080823662043,2.4747128070665,6.1904156364636,0,38.9104237615149,2.83700546277113,2.62272940674991,0,0,15.1613005882362,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,0,12.6866704017001,3.63077202730162,0.943225830597996,2.89967338743037,0.992332043623902,0,0,11.4901426398633,0,0,0,0,24.3433849187863,0,0,0,0,0,0,0,0,0.606596470166591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53744911152768,0,0,0,11.1070376038451,14.3494027538432,15.2115816657935,0,0,21.3425244592213,0,0,0,0,0,18.7438540344056,9.95323616052756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,13.4462374346405,12.5047906748605,15.7748594728644,15.8270162625963,0,0,0,0.300841313397029,0,9.37816813479711,2.88097363929565,0,14.0463281906193,0,0,0,0,0,10.4168975702865,2.48105589194647,0,10.2209942111676,0,0,0,0,4.3464161379693,0,0,0,0,0.118193840883968,24.0259828086869,3.21821680687107,0,9.80952571598262,7.30526976407596,0,0,0,0,0,0,0,0.828864656652147,0.6828739083758,4.14755797088455,8.17431981758527,0,0,8.46774100381858,7.10231292486555,0,0,5.70462702168741,5.49641308245361,16.5808377975886,0,0,0,5.34282092365053,0.233939463462106,0.596852325484105,0,12.1981768602077,0,0.452888530700021,4.55327532836874,1.74847648403166,0.940634592723046,0.490296643507811,5.4205605833374,0,0,0.4226557275834,0,0.0939839179798536,0,0,12.498775702396,3.52894871715692,8.26486076898433,2.92134555298607,9.17458566809082,0,0,0,0,3.1741610430924,0,0,0,0,0,0,2.44773191380756,0.26721740526556,0.643264296743914,2.50707539292375,0.151557396436479,0,0,0,7.88965733033629,1.66645102024618,0.775066918032073,0.496597714366863,0,1.33659032384146,0.404234377916439,12.1921378822298,7.1868993227909,14.6153955041655,9.0369978794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| ||
|short_description=p3@LAD1 | |||
}} | }} |
Latest revision as of 17:46, 19 September 2015
Short description: | p3@LAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAD1_5end |
Coexpression cluster: | C543_Alveolar_Corneal_Urothelial_amniotic_Esophageal_Tracheal_esophagus |
Association with transcript: | 0bp_to_ENST00000391967_5end |
EntrezGene: | LAD1 |
HGNC: | 6472 |
UniProt: | O00515 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.17e-28 | 253 |
endo-epithelial cell | 1.78e-26 | 42 |
endodermal cell | 9.92e-21 | 58 |
respiratory epithelial cell | 3.70e-14 | 13 |
epithelial cell of alimentary canal | 6.77e-12 | 20 |
epithelial cell of tracheobronchial tree | 5.75e-10 | 9 |
epithelial cell of lower respiratory tract | 5.75e-10 | 9 |
general ecto-epithelial cell | 2.30e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.18e-24 | 160 |
endoderm | 1.18e-24 | 160 |
presumptive endoderm | 1.18e-24 | 160 |
digestive system | 4.12e-18 | 145 |
digestive tract | 4.12e-18 | 145 |
primitive gut | 4.12e-18 | 145 |
subdivision of digestive tract | 1.41e-15 | 118 |
respiratory system | 4.02e-13 | 74 |
urinary system structure | 1.39e-12 | 47 |
renal system | 3.77e-12 | 48 |
trunk region element | 9.27e-11 | 101 |
orifice | 2.05e-10 | 36 |
endo-epithelium | 3.63e-10 | 82 |
epithelial bud | 4.72e-10 | 37 |
thoracic cavity element | 1.02e-09 | 34 |
thoracic cavity | 1.02e-09 | 34 |
thoracic segment organ | 2.81e-09 | 35 |
mucosa | 7.67e-09 | 20 |
epithelial fold | 9.89e-09 | 47 |
respiratory tract | 1.08e-08 | 54 |
oral opening | 1.22e-08 | 22 |
foregut | 1.43e-08 | 87 |
extraembryonic membrane | 6.19e-08 | 14 |
membranous layer | 6.19e-08 | 14 |
tracheobronchial tree | 8.67e-08 | 15 |
lower respiratory tract | 8.67e-08 | 15 |
urothelium | 1.11e-07 | 5 |
subdivision of trunk | 1.92e-07 | 112 |
thoracic segment of trunk | 2.32e-07 | 52 |
intestine | 6.95e-07 | 17 |
mouth | 9.59e-07 | 29 |
stomodeum | 9.59e-07 | 29 |
gastrointestinal system | 9.87e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.65e-14 | 14 |
carcinoma | 2.27e-13 | 106 |
adenocarcinoma | 8.59e-11 | 25 |
cell type cancer | 2.49e-09 | 143 |