FFCP PHASE1:Hg19::chr6:152589366..152589388,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_ENST00000545694_5end | |association_with_transcript=-60bp_to_ENST00000545694_5end | ||
|cluster_id=chr6:152589366..152589388,- | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_23_at_SYNE1_5end | |description=CAGE_peak_23_at_SYNE1_5end | ||
|id=chr6:152589366..152589388,- | |id=chr6:152589366..152589388,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000138;2.19e-12;6!CL:0000153;1.04e-08;9!CL:0000447;1.04e-08;9!CL:0000182;8.14e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0000153,1.04e-08,9;CL:0000447,1.04e-08,9;CL:0000182,8.38e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.55e-07;11 | |||
|ontology_enrichment_disease=DOID:3371!4.09e-07!1;DOID:4549!4.09e-07!1;DOID:5861!4.09e-07!1;DOID:6496!4.09e-07!1 | |ontology_enrichment_disease=DOID:3371!4.09e-07!1;DOID:4549!4.09e-07!1;DOID:5861!4.09e-07!1;DOID:6496!4.09e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.23e-66;1!DOID:4549;1.23e-66;1!DOID:5861;1.23e-66;1!DOID:6496;1.23e-66;1!DOID:201;2.19e-12;6!DOID:0060100;2.19e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0000007!3.18e-12!2;UBERON:0001870!1.11e-11!2;UBERON:0003127!2.90e-11!2;UBERON:0007023!5.54e-11!115;UBERON:0002780!7.93e-09!41;UBERON:0001890!7.93e-09!41;UBERON:0006240!7.93e-09!41;UBERON:0001950!1.37e-08!20;UBERON:0003080!1.38e-08!42;UBERON:0000200!2.04e-08!6;UBERON:0002619!8.62e-08!22;UBERON:0002771!1.13e-07!3;UBERON:0001894!1.39e-07!7;UBERON:0006222!1.39e-07!7;UBERON:0001049!2.28e-07!57;UBERON:0005068!2.28e-07!57;UBERON:0006241!2.28e-07!57;UBERON:0007135!2.28e-07!57;UBERON:0002616!4.58e-07!59;UBERON:0000989!4.85e-07!1;UBERON:0008811!4.85e-07!1;UBERON:0006258!4.85e-07!1;UBERON:0005876!4.85e-07!1;UBERON:0004874!4.85e-07!1;UBERON:0002702!5.75e-07!1;UBERON:0000956!7.99e-07!25;UBERON:0000203!7.99e-07!25 | |ontology_enrichment_uberon=UBERON:0000007!3.18e-12!2;UBERON:0001870!1.11e-11!2;UBERON:0003127!2.90e-11!2;UBERON:0007023!5.54e-11!115;UBERON:0002780!7.93e-09!41;UBERON:0001890!7.93e-09!41;UBERON:0006240!7.93e-09!41;UBERON:0001950!1.37e-08!20;UBERON:0003080!1.38e-08!42;UBERON:0000200!2.04e-08!6;UBERON:0002619!8.62e-08!22;UBERON:0002771!1.13e-07!3;UBERON:0001894!1.39e-07!7;UBERON:0006222!1.39e-07!7;UBERON:0001049!2.28e-07!57;UBERON:0005068!2.28e-07!57;UBERON:0006241!2.28e-07!57;UBERON:0007135!2.28e-07!57;UBERON:0002616!4.58e-07!59;UBERON:0000989!4.85e-07!1;UBERON:0008811!4.85e-07!1;UBERON:0006258!4.85e-07!1;UBERON:0005876!4.85e-07!1;UBERON:0004874!4.85e-07!1;UBERON:0002702!5.75e-07!1;UBERON:0000956!7.99e-07!25;UBERON:0000203!7.99e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.62e-23;3!UBERON:0004755;2.62e-23;3!UBERON:0002021;1.71e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0002021,1.60e-14,5 | |||
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|short_description=p23@SYNE1 | |short_description=p23@SYNE1 | ||
}} | }} |
Latest revision as of 06:23, 16 September 2015
Short description: | p23@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_23_at_SYNE1_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -60bp_to_ENST00000545694_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
hepatocyte | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
occipital lobe | 1.60e-14 | 5 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |