FFCP PHASE1:Hg19::chr12:4136920..4136943,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:4136920..4136943,+ | |||
|coexpression_cluster_id=C461 | |coexpression_cluster_id=C461 | ||
|description=CAGE_peak_at_chr12:4136920..4136943,+ | |description=CAGE_peak_at_chr12:4136920..4136943,+ | ||
|id=chr12:4136920..4136943,+ | |id=chr12:4136920..4136943,+ | ||
|ontology_enrichment_celltype=CL:0002251!3.46e-13!21;CL:0000223!4.57e-13!59;CL:0002623!3.00e-12!3;CL:0002076!1.89e-10!43;CL:0000066!8.35e-08!254;CL:0000622!1.64e-07!5 | |ontology_enrichment_celltype=CL:0002251!3.46e-13!21;CL:0000223!4.57e-13!59;CL:0002623!3.00e-12!3;CL:0002076!1.89e-10!43;CL:0000066!8.35e-08!254;CL:0000622!1.64e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002149;7.13e-20;6!CL:0002255;7.13e-20;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,7.13e-20,6;CL:0002255,7.13e-20,6;CL:0002076,8.53e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.15e-15;2!UBERON:0010056;1.15e-15;2 | |||
|ontology_enrichment_disease=DOID:305!9.82e-10!106;DOID:0050687!7.66e-07!143 | |ontology_enrichment_disease=DOID:305!9.82e-10!106;DOID:0050687!7.66e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:5093;4.86e-29;4!DOID:1612;4.86e-29;4!DOID:299;1.80e-28;25!DOID:3001;7.13e-20;6!DOID:4468;2.05e-15;2!DOID:120;3.69e-10;27!DOID:193;1.66e-09;29!DOID:1749;4.04e-09;14!DOID:305;1.98e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,7.46e-29,4;DOID:1612,7.46e-29,4;DOID:299,1.90e-28,25;DOID:3001,7.13e-20,6;DOID:4468,1.54e-15,2;DOID:305,2.72e-13,106;DOID:120,3.47e-10,27;DOID:0050687,6.71e-10,143;DOID:193,1.57e-09,29;DOID:1749,3.88e-09,14;DOID:7,3.24e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.19e-10!129;UBERON:0004185!1.19e-10!129;UBERON:0004119!2.20e-10!169;UBERON:0000925!2.20e-10!169;UBERON:0006595!2.20e-10!169;UBERON:0001007!7.96e-10!155;UBERON:0001555!7.96e-10!155;UBERON:0007026!7.96e-10!155;UBERON:0000166!5.09e-08!21;UBERON:0001041!4.78e-07!98 | |ontology_enrichment_uberon=UBERON:0004921!1.19e-10!129;UBERON:0004185!1.19e-10!129;UBERON:0004119!2.20e-10!169;UBERON:0000925!2.20e-10!169;UBERON:0006595!2.20e-10!169;UBERON:0001007!7.96e-10!155;UBERON:0001555!7.96e-10!155;UBERON:0007026!7.96e-10!155;UBERON:0000166!5.09e-08!21;UBERON:0001041!4.78e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0000310;2.81e-12;10!UBERON:0001443;2.98e-11;11!UBERON:0001723;6.73e-11;3!UBERON:0001033;6.73e-11;3!UBERON:0003343;1.70e-08;4!UBERON:0004785;1.70e-08;4!UBERON:0000995;1.17e-07;17!UBERON:0003975;2.77e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,3.34e-12,10;UBERON:0001443,3.48e-11,11;UBERON:0001723,6.73e-11,3;UBERON:0001033,6.73e-11,3;UBERON:0010056,6.73e-11,3;UBERON:0003343,1.70e-08,4;UBERON:0004785,1.70e-08,4 | |||
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| ||
|short_description=p@chr12:4136920..4136943,+ | |short_description=p@chr12:4136920..4136943,+ | ||
}} | }} |
Latest revision as of 08:26, 24 July 2015
Short description: | p@chr12:4136920..4136943, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:4136920..4136943, + |
Coexpression cluster: | C461_oral_chorionic_squamous_amniotic_epidermoid_gall_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 7.13e-20 | 6 |
stromal cell of endometrium | 7.13e-20 | 6 |
endo-epithelial cell | 8.53e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
breast | 3.34e-12 | 10 |
chest | 3.48e-11 | 11 |
tongue | 6.73e-11 | 3 |
gustatory system | 6.73e-11 | 3 |
future tongue | 6.73e-11 | 3 |
mucosa of oral region | 1.70e-08 | 4 |
respiratory system mucosa | 1.70e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 7.46e-29 | 4 |
breast cancer | 7.46e-29 | 4 |
adenocarcinoma | 1.90e-28 | 25 |
female reproductive endometrioid cancer | 7.13e-20 | 6 |
clear cell adenocarcinoma | 1.54e-15 | 2 |
carcinoma | 2.72e-13 | 106 |
female reproductive organ cancer | 3.47e-10 | 27 |
cell type cancer | 6.71e-10 | 143 |
reproductive organ cancer | 1.57e-09 | 29 |
squamous cell carcinoma | 3.88e-09 | 14 |
disease of anatomical entity | 3.24e-07 | 39 |