FFCP PHASE1:Hg19::chr2:224463376..224463387,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:224463376..224463387,- | |||
|coexpression_cluster_id=C708 | |coexpression_cluster_id=C708 | ||
|description=CAGE_peak_at_chr2:224463376..224463387,- | |description=CAGE_peak_at_chr2:224463376..224463387,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002564!4.07e-08!3 | |ontology_enrichment_celltype=CL:0002564!4.07e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000167;6.82e-13;1!CL:0000164;6.82e-13;1!CL:0000502;6.82e-13;1!CL:0000172;6.82e-13;1!CL:0002553;6.82e-13;1!CL:0000173;6.82e-13;1 | |ontology_enrichment_celltype_v019=CL:0000167;6.82e-13;1!CL:0000164;6.82e-13;1!CL:0000502;6.82e-13;1!CL:0000172;6.82e-13;1!CL:0002553;6.82e-13;1!CL:0000173;6.82e-13;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002553,4.77e-13,1;CL:0000167,6.82e-13,1;CL:0000164,6.82e-13,1;CL:0000502,6.82e-13,1;CL:0000172,6.82e-13,1;CL:0000173,6.82e-13,1;CL:0002351,6.82e-13,1 | |||
|ontology_enrichment_development_v019=CL:0002351;6.82e-13;1!UBERON:0010122;2.91e-07;2 | |ontology_enrichment_development_v019=CL:0002351;6.82e-13;1!UBERON:0010122;2.91e-07;2 | ||
|ontology_enrichment_disease=DOID:171!2.79e-15!10;DOID:169!5.47e-10!6;DOID:3095!1.20e-07!22;DOID:2994!1.20e-07!22 | |ontology_enrichment_disease=DOID:171!2.79e-15!10;DOID:169!5.47e-10!6;DOID:3095!1.20e-07!22;DOID:2994!1.20e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:171;4.01e-19;10!DOID:5662;6.82e-13;1!DOID:4430;6.82e-13;1!DOID:3095;7.89e-09;22!DOID:2994;7.89e-09;22 | |ontology_enrichment_disease_v019=DOID:171;4.01e-19;10!DOID:5662;6.82e-13;1!DOID:4430;6.82e-13;1!DOID:3095;7.89e-09;22!DOID:2994;7.89e-09;22 | ||
|ontology_enrichment_disease_v019_2=DOID:171,3.57e-19,10;DOID:4430,6.82e-13,1;DOID:5662,9.73e-13,1;DOID:3095,7.49e-09,22;DOID:2994,7.49e-09,22 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0005383,8.55e-17,3;UBERON:0005382,8.55e-17,3;UBERON:0001874,2.95e-13,1;UBERON:0003112,7.68e-13,1;UBERON:0011158,7.68e-13,1;UBERON:0003128,7.68e-13,1;UBERON:0001703,7.68e-13,1;UBERON:0002241,7.68e-13,1;UBERON:0004761,7.68e-13,1;UBERON:0009617,7.68e-13,1;UBERON:0000369,7.70e-13,4;UBERON:0002435,7.70e-13,4;UBERON:0000204,7.70e-13,4;UBERON:0010082,7.70e-13,4;UBERON:0000125,1.70e-12,9;UBERON:0002308,1.70e-12,9;UBERON:0002346,7.62e-08,86;UBERON:0009663,1.02e-07,7;UBERON:0002148,2.74e-07,2;UBERON:0006331,2.74e-07,2;UBERON:0009662,2.74e-07,2;UBERON:0001873,3.09e-07,2;UBERON:0010122,3.09e-07,2;UBERON:0002771,3.48e-07,2;UBERON:0000007,4.17e-07,2;UBERON:0005253,4.69e-07,2 | |||
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| ||
|short_description=p@chr2:224463376..224463387,- | |short_description=p@chr2:224463376..224463387,- | ||
}} | }} |
Latest revision as of 07:07, 29 July 2015
Short description: | p@chr2:224463376..224463387, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224463376..224463387, - |
Coexpression cluster: | C708_smallcell_peripheral_gastrointestinal_neuroectodermal_Neurons_pituitary_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 4.77e-13 | 1 |
peptide hormone secreting cell | 6.82e-13 | 1 |
enteroendocrine cell | 6.82e-13 | 1 |
type D enteroendocrine cell | 6.82e-13 | 1 |
somatostatin secreting cell | 6.82e-13 | 1 |
pancreatic D cell | 6.82e-13 | 1 |
progenitor cell of endocrine pancreas | 6.82e-13 | 1 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 8.55e-17 | 3 |
dorsal striatum | 8.55e-17 | 3 |
putamen | 2.95e-13 | 1 |
olfactory region | 7.68e-13 | 1 |
primary subdivision of skull | 7.68e-13 | 1 |
cranium | 7.68e-13 | 1 |
neurocranium | 7.68e-13 | 1 |
chondrocranium | 7.68e-13 | 1 |
cartilaginous neurocranium | 7.68e-13 | 1 |
head paraxial mesoderm | 7.68e-13 | 1 |
corpus striatum | 7.70e-13 | 4 |
striatum | 7.70e-13 | 4 |
ventral part of telencephalon | 7.70e-13 | 4 |
future corpus striatum | 7.70e-13 | 4 |
neural nucleus | 1.70e-12 | 9 |
nucleus of brain | 1.70e-12 | 9 |
neurectoderm | 7.62e-08 | 86 |
telencephalic nucleus | 1.02e-07 | 7 |
locus ceruleus | 2.74e-07 | 2 |
brainstem nucleus | 2.74e-07 | 2 |
hindbrain nucleus | 2.74e-07 | 2 |
caudate nucleus | 3.09e-07 | 2 |
future caudate nucleus | 3.09e-07 | 2 |
middle temporal gyrus | 3.48e-07 | 2 |
pituitary gland | 4.17e-07 | 2 |
head mesenchyme | 4.69e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.57e-19 | 10 |
somatostatinoma | 6.82e-13 | 1 |
pleomorphic carcinoma | 9.73e-13 | 1 |
germ cell and embryonal cancer | 7.49e-09 | 22 |
germ cell cancer | 7.49e-09 | 22 |