FFCP PHASE1:Hg19::chr12:46662478..46662504,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81539 | |EntrezGene=81539 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13447 | |HGNC=13447 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=84bp_to_ENST00000551506_5end | |association_with_transcript=84bp_to_ENST00000551506_5end | ||
|cluster_id=chr12:46662478..46662504,- | |||
|coexpression_cluster_id=C3280 | |coexpression_cluster_id=C3280 | ||
|description=CAGE_peak_6_at_SLC38A1_5end | |description=CAGE_peak_6_at_SLC38A1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!2.20e-27!254;CL:0000548!3.82e-14!679;CL:0000004!3.82e-14!679;CL:0000255!3.82e-14!679;CL:0000012!2.43e-13!682;CL:0000063!7.84e-13!578;CL:0002076!1.19e-09!43;CL:0000223!2.80e-09!59;CL:0000003!2.15e-08!722;CL:0000076!8.97e-07!62 | |ontology_enrichment_celltype=CL:0000066!2.20e-27!254;CL:0000548!3.82e-14!679;CL:0000004!3.82e-14!679;CL:0000255!3.82e-14!679;CL:0000012!2.43e-13!682;CL:0000063!7.84e-13!578;CL:0002076!1.19e-09!43;CL:0000223!2.80e-09!59;CL:0000003!2.15e-08!722;CL:0000076!8.97e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.45e-08;42!CL:0002251;4.72e-07;20 | |ontology_enrichment_celltype_v019=CL:0002076;1.45e-08;42!CL:0002251;4.72e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.98e-28,253;CL:0002076,1.90e-10,42;CL:0000223,5.16e-10,58;CL:0002251,4.25e-07,20 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!1.27e-33!235;DOID:14566!1.67e-33!239;DOID:305!1.17e-24!106;DOID:0050687!2.64e-24!143;DOID:0050686!1.92e-15!137 | |ontology_enrichment_disease=DOID:162!1.27e-33!235;DOID:14566!1.67e-33!239;DOID:305!1.17e-24!106;DOID:0050687!2.64e-24!143;DOID:0050686!1.92e-15!137 | ||
|ontology_enrichment_disease_v019=DOID:305;3.86e-08;106 | |ontology_enrichment_disease_v019=DOID:305;3.86e-08;106 | ||
|ontology_enrichment_disease_v019_2=DOID:162,2.90e-34,235;DOID:14566,3.83e-34,239;DOID:305,4.35e-25,106;DOID:0050687,1.23e-24,143;DOID:0050686,9.08e-16,137 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.72e-10!169;UBERON:0000925!1.72e-10!169;UBERON:0006595!1.72e-10!169;UBERON:0001007!8.25e-09!155;UBERON:0001555!8.25e-09!155;UBERON:0007026!8.25e-09!155;UBERON:0001004!1.64e-07!72;UBERON:0000077!2.53e-07!130 | |ontology_enrichment_uberon=UBERON:0004119!1.72e-10!169;UBERON:0000925!1.72e-10!169;UBERON:0006595!1.72e-10!169;UBERON:0001007!8.25e-09!155;UBERON:0001555!8.25e-09!155;UBERON:0007026!8.25e-09!155;UBERON:0001004!1.64e-07!72;UBERON:0000077!2.53e-07!130 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.64e-09,160;UBERON:0000925,4.64e-09,160;UBERON:0006595,4.64e-09,160;UBERON:0001004,1.28e-07,74;UBERON:0001007,2.85e-07,145;UBERON:0001555,2.85e-07,145;UBERON:0007026,2.85e-07,145 | |||
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| ||
|short_description=p6@SLC38A1 | |short_description=p6@SLC38A1 | ||
}} | }} |
Latest revision as of 10:46, 18 September 2015
Short description: | p6@SLC38A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLC38A1_5end |
Coexpression cluster: | C3280_acute_somatostatinoma_neuroblastoma_small_choriocarcinoma_bile_signet |
Association with transcript: | 84bp_to_ENST00000551506_5end |
EntrezGene: | SLC38A1 |
HGNC: | 13447 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.98e-28 | 253 |
endo-epithelial cell | 1.90e-10 | 42 |
endodermal cell | 5.16e-10 | 58 |
epithelial cell of alimentary canal | 4.25e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.64e-09 | 160 |
endoderm | 4.64e-09 | 160 |
presumptive endoderm | 4.64e-09 | 160 |
respiratory system | 1.28e-07 | 74 |
digestive system | 2.85e-07 | 145 |
digestive tract | 2.85e-07 | 145 |
primitive gut | 2.85e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.90e-34 | 235 |
disease of cellular proliferation | 3.83e-34 | 239 |
carcinoma | 4.35e-25 | 106 |
cell type cancer | 1.23e-24 | 143 |
organ system cancer | 9.08e-16 | 137 |