FFCP PHASE1:Hg19::chr1:203155464..203155497,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:203155464..203155497,- | |||
|coexpression_cluster_id=C283 | |coexpression_cluster_id=C283 | ||
|description=CAGE_peak_at_chr1:203155464..203155497,- | |description=CAGE_peak_at_chr1:203155464..203155497,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000153!4.66e-12!9;CL:0000447!4.66e-12!9;CL:0000667!7.87e-10!6;CL:0000058!7.87e-10!6;CL:0000138!7.87e-10!6;CL:0000135!1.10e-07!3;CL:0000386!1.10e-07!3;CL:0000388!1.10e-07!3;CL:0000327!2.94e-07!14 | |ontology_enrichment_celltype=CL:0000153!4.66e-12!9;CL:0000447!4.66e-12!9;CL:0000667!7.87e-10!6;CL:0000058!7.87e-10!6;CL:0000138!7.87e-10!6;CL:0000135!1.10e-07!3;CL:0000386!1.10e-07!3;CL:0000388!1.10e-07!3;CL:0000327!2.94e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.29e-40;9!CL:0000447;1.29e-40;9!CL:0000138;8.09e-32;6!CL:0000327;4.14e-24;15!CL:0000499;6.27e-21;28!CL:0002540;3.09e-12;6!CL:0000135;1.03e-11;3!CL:0000388;1.03e-11;3!CL:0000214;5.56e-11;3!CL:0000151;6.48e-08;36!CL:0002092;1.55e-07;10 | |ontology_enrichment_celltype_v019=CL:0000153;1.29e-40;9!CL:0000447;1.29e-40;9!CL:0000138;8.09e-32;6!CL:0000327;4.14e-24;15!CL:0000499;6.27e-21;28!CL:0002540;3.09e-12;6!CL:0000135;1.03e-11;3!CL:0000388;1.03e-11;3!CL:0000214;5.56e-11;3!CL:0000151;6.48e-08;36!CL:0002092;1.55e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,8.49e-41,9;CL:0000447,8.49e-41,9;CL:0000058,6.06e-32,6;CL:0000138,6.06e-32,6;CL:0000327,3.24e-24,15;CL:0000499,5.29e-21,28;CL:0002540,3.27e-12,6;CL:0000135,1.03e-11,3;CL:0000388,1.03e-11,3;CL:0000214,4.90e-11,3;CL:0000151,1.19e-09,36;CL:0002092,1.60e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0010115;9.17e-09;1!UBERON:0004161;8.14e-07;11 | |ontology_enrichment_development_v019=UBERON:0010115;9.17e-09;1!UBERON:0004161;8.14e-07;11 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5662;3.72e-09;1 | |ontology_enrichment_disease_v019=DOID:5662;3.72e-09;1 | ||
|ontology_enrichment_disease_v019_2=DOID:5662,4.19e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.63e-12!57;UBERON:0005068!1.63e-12!57;UBERON:0006241!1.63e-12!57;UBERON:0007135!1.63e-12!57;UBERON:0002298!5.54e-12!8;UBERON:0000073!1.43e-11!94;UBERON:0001016!1.43e-11!94;UBERON:0005743!1.59e-11!86;UBERON:0001017!2.03e-11!82;UBERON:0002020!1.25e-09!34;UBERON:0003528!1.25e-09!34;UBERON:0002616!1.43e-09!59;UBERON:0000955!4.03e-09!69;UBERON:0006238!4.03e-09!69;UBERON:0007023!4.36e-09!115;UBERON:0002791!1.93e-08!33;UBERON:0001893!4.18e-08!34;UBERON:0003075!5.23e-08!86;UBERON:0007284!5.23e-08!86;UBERON:0000043!1.10e-07!3;UBERON:0003076!1.17e-07!15;UBERON:0003057!1.17e-07!15;UBERON:0002346!2.17e-07!90;UBERON:0002308!2.18e-07!9;UBERON:0000125!2.18e-07!9;UBERON:0002780!2.50e-07!41;UBERON:0001890!2.50e-07!41;UBERON:0006240!2.50e-07!41;UBERON:0000988!2.82e-07!3;UBERON:0003080!4.46e-07!42;UBERON:0006331!7.45e-07!3;UBERON:0001896!7.92e-07!3;UBERON:0005290!7.92e-07!3;UBERON:0010096!7.92e-07!3 | |ontology_enrichment_uberon=UBERON:0001049!1.63e-12!57;UBERON:0005068!1.63e-12!57;UBERON:0006241!1.63e-12!57;UBERON:0007135!1.63e-12!57;UBERON:0002298!5.54e-12!8;UBERON:0000073!1.43e-11!94;UBERON:0001016!1.43e-11!94;UBERON:0005743!1.59e-11!86;UBERON:0001017!2.03e-11!82;UBERON:0002020!1.25e-09!34;UBERON:0003528!1.25e-09!34;UBERON:0002616!1.43e-09!59;UBERON:0000955!4.03e-09!69;UBERON:0006238!4.03e-09!69;UBERON:0007023!4.36e-09!115;UBERON:0002791!1.93e-08!33;UBERON:0001893!4.18e-08!34;UBERON:0003075!5.23e-08!86;UBERON:0007284!5.23e-08!86;UBERON:0000043!1.10e-07!3;UBERON:0003076!1.17e-07!15;UBERON:0003057!1.17e-07!15;UBERON:0002346!2.17e-07!90;UBERON:0002308!2.18e-07!9;UBERON:0000125!2.18e-07!9;UBERON:0002780!2.50e-07!41;UBERON:0001890!2.50e-07!41;UBERON:0006240!2.50e-07!41;UBERON:0000988!2.82e-07!3;UBERON:0003080!4.46e-07!42;UBERON:0006331!7.45e-07!3;UBERON:0001896!7.92e-07!3;UBERON:0005290!7.92e-07!3;UBERON:0010096!7.92e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.03e-11;3!UBERON:0000043;1.03e-11;3!UBERON:0007845;1.03e-11;3!UBERON:0006915;5.56e-11;3!UBERON:0007616;5.56e-11;3!UBERON:0002217;5.56e-11;3!UBERON:0002018;5.56e-11;3!UBERON:0001282;3.72e-09;1!UBERON:0009842;3.72e-09;1!UBERON:0003704;3.72e-09;1!UBERON:0001171;3.72e-09;1!UBERON:0001172;3.72e-09;1!UBERON:0002363;9.17e-09;1 | |ontology_enrichment_uberon_v019=UBERON:0007846;1.03e-11;3!UBERON:0000043;1.03e-11;3!UBERON:0007845;1.03e-11;3!UBERON:0006915;5.56e-11;3!UBERON:0007616;5.56e-11;3!UBERON:0002217;5.56e-11;3!UBERON:0002018;5.56e-11;3!UBERON:0001282;3.72e-09;1!UBERON:0009842;3.72e-09;1!UBERON:0003704;3.72e-09;1!UBERON:0001171;3.72e-09;1!UBERON:0001172;3.72e-09;1!UBERON:0002363;9.17e-09;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.03e-11,3;UBERON:0000043,1.03e-11,3;UBERON:0007845,1.03e-11,3;UBERON:0006915,4.90e-11,3;UBERON:0007616,4.90e-11,3;UBERON:0002217,4.90e-11,3;UBERON:0002018,4.90e-11,3;UBERON:0001282,4.54e-09,1;UBERON:0009842,4.54e-09,1;UBERON:0003704,4.54e-09,1;UBERON:0001171,4.54e-09,1;UBERON:0001172,4.54e-09,1;UBERON:0002363,9.17e-09,1;UBERON:0007645,9.17e-09,1;UBERON:0007647,9.17e-09,1;UBERON:0010115,9.17e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,4.51204119572301,2.60723734129483,7.95285947051099,2.91980922181582,0,0,0,0.130979075497713,0,0,0,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9313088667105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,12.8702345826581,5.20209068010549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54657762555539,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,2.53329162357197,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0.156679895773023,0,0,0,0,0,0.687010689511529,8.29550063632837,4.92087437363315,5.8397199599168,0.586164286206121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0,0,0,0,0,0,4.21585606633904,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,4.66465135732005,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,1.51647791108371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,2.31160471921215,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0.137539436597234,0,0,0,0.121499113316049,0,0.157611414598396,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0.517131825446202,1.19009341568421,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.443716206147409,0.248385611765534,0,0,0,0,0,0,0,0,0,0.554805861502613,1.32582103692562,10.5658518736082,4.44905610798268,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0.606965604236632,0,0,0,4.28720023593546,0.543757863814654,0.0657727735628491,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0.414432328326074,0,0,0,0.473328002922261,0.0852134047591577,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0.198950775161368,0,0,0.329821550236287,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,5.20793025433452,23.5709570602023,0.432626562123789,0.252332849670158,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,4.51204119572301,2.60723734129483,7.95285947051099,2.91980922181582,0,0,0,0.130979075497713,0,0,0,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9313088667105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,12.8702345826581,5.20209068010549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54657762555539,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,2.53329162357197,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0.156679895773023,0,0,0,0,0,0.687010689511529,8.29550063632837,4.92087437363315,5.8397199599168,0.586164286206121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0,0,0,0,0,0,4.21585606633904,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,4.66465135732005,0,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,0,0,1.51647791108371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,2.31160471921215,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0.137539436597234,0,0,0,0.121499113316049,0,0.157611414598396,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02586563574658,0,0.517131825446202,1.19009341568421,0,0,0,0,0,0,0.395223263795889,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.443716206147409,0.248385611765534,0,0,0,0,0,0,0,0,0,0.554805861502613,1.32582103692562,10.5658518736082,4.44905610798268,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0.438568099157414,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0.606965604236632,0,0,0,4.28720023593546,0.543757863814654,0.0657727735628491,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0.414432328326074,0,0,0,0.473328002922261,0.0852134047591577,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0.198950775161368,0,0,0.329821550236287,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,5.20793025433452,23.5709570602023,0.432626562123789,0.252332849670158,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p@chr1:203155464..203155497,- | |short_description=p@chr1:203155464..203155497,- | ||
}} | }} |
Latest revision as of 02:25, 28 July 2015
Short description: | p@chr1:203155464..203155497, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:203155464..203155497, - |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 8.49e-41 | 9 |
carbohydrate secreting cell | 8.49e-41 | 9 |
chondroblast | 6.06e-32 | 6 |
chondrocyte | 6.06e-32 | 6 |
extracellular matrix secreting cell | 3.24e-24 | 15 |
stromal cell | 5.29e-21 | 28 |
mesenchymal stem cell of the bone marrow | 3.27e-12 | 6 |
fibrocyte | 1.03e-11 | 3 |
tendon cell | 1.03e-11 | 3 |
synovial cell | 4.90e-11 | 3 |
secretory cell | 1.19e-09 | 36 |
bone marrow cell | 1.60e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.03e-11 | 3 |
tendon | 1.03e-11 | 3 |
regular connective tissue | 1.03e-11 | 3 |
stratified squamous epithelium | 4.90e-11 | 3 |
layer of synovial tissue | 4.90e-11 | 3 |
synovial joint | 4.90e-11 | 3 |
synovial membrane of synovial joint | 4.90e-11 | 3 |
intralobular bile duct | 4.54e-09 | 1 |
acinus | 4.54e-09 | 1 |
intrahepatic bile duct | 4.54e-09 | 1 |
portal lobule | 4.54e-09 | 1 |
hepatic acinus | 4.54e-09 | 1 |
dura mater | 9.17e-09 | 1 |
future meninx | 9.17e-09 | 1 |
ectomeninx | 9.17e-09 | 1 |
future dura mater | 9.17e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 4.19e-09 | 1 |