FFCP PHASE1:Hg19::chr17:48264045..48264073,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=100bp_to_ENST00000510710_5end | |association_with_transcript=100bp_to_ENST00000510710_5end | ||
|cluster_id=chr17:48264045..48264073,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_6_at_COL1A1_5end | |description=CAGE_peak_6_at_COL1A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!7.88e-40!180;CL:0000057!1.73e-24!75;CL:0000183!7.01e-16!59;CL:0000680!1.59e-15!57;CL:0000056!1.59e-15!57;CL:0000355!1.59e-15!57;CL:0000187!6.34e-15!54;CL:0000393!7.11e-13!60;CL:0000211!7.11e-13!60;CL:0000192!2.71e-12!42;CL:0000514!2.71e-12!42;CL:0000048!1.30e-09!430;CL:0000499!3.12e-09!27;CL:0000723!5.93e-09!436;CL:0000034!1.45e-08!444;CL:0000359!1.66e-08!32;CL:0000144!1.84e-08!625;CL:0002371!2.04e-08!591;CL:0002334!2.16e-08!12;CL:0002620!2.94e-08!23;CL:0000222!2.38e-07!119;CL:0000327!7.27e-07!14 | |ontology_enrichment_celltype=CL:0000055!7.88e-40!180;CL:0000057!1.73e-24!75;CL:0000183!7.01e-16!59;CL:0000680!1.59e-15!57;CL:0000056!1.59e-15!57;CL:0000355!1.59e-15!57;CL:0000187!6.34e-15!54;CL:0000393!7.11e-13!60;CL:0000211!7.11e-13!60;CL:0000192!2.71e-12!42;CL:0000514!2.71e-12!42;CL:0000048!1.30e-09!430;CL:0000499!3.12e-09!27;CL:0000723!5.93e-09!436;CL:0000034!1.45e-08!444;CL:0000359!1.66e-08!32;CL:0000144!1.84e-08!625;CL:0002371!2.04e-08!591;CL:0002334!2.16e-08!12;CL:0002620!2.94e-08!23;CL:0000222!2.38e-07!119;CL:0000327!7.27e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.06e-11;55!CL:0000057;5.93e-11;73!CL:0002320;3.32e-10;188!CL:0000723;3.83e-10;61!CL:0000048;7.43e-10;58!CL:0002620;1.95e-09;23!CL:0002334;1.96e-09;12!CL:0000192;2.72e-09;43!CL:0000187;3.52e-09;55!CL:0000499;2.49e-08;28!CL:0000359;3.20e-08;32!CL:0000034;6.50e-08;69!CL:0000327;2.82e-07;15!CL:0002570;5.51e-07;8 | |ontology_enrichment_celltype_v019=CL:0000134;1.06e-11;55!CL:0000057;5.93e-11;73!CL:0002320;3.32e-10;188!CL:0000723;3.83e-10;61!CL:0000048;7.43e-10;58!CL:0002620;1.95e-09;23!CL:0002334;1.96e-09;12!CL:0000192;2.72e-09;43!CL:0000187;3.52e-09;55!CL:0000499;2.49e-08;28!CL:0000359;3.20e-08;32!CL:0000034;6.50e-08;69!CL:0000327;2.82e-07;15!CL:0002570;5.51e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.24e-29,76;CL:0000680,7.29e-17,58;CL:0000056,7.29e-17,58;CL:0000355,7.29e-17,58;CL:0000187,3.61e-16,55;CL:0000048,2.66e-15,427;CL:0000723,2.95e-14,433;CL:0000034,1.68e-13,441;CL:0000192,5.31e-13,43;CL:0000514,5.31e-13,43;CL:0000393,7.04e-13,61;CL:0000211,7.04e-13,61;CL:0002334,2.01e-09,12;CL:0002620,2.07e-09,23;CL:0000359,1.91e-08,32;CL:0000499,2.51e-08,28;CL:0000222,6.05e-08,121;CL:0002320,8.16e-08,361;CL:0000327,2.94e-07,15;CL:0002570,5.57e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;2.72e-09;43!CL:0000355;3.68e-09;58 | |ontology_enrichment_development_v019=CL:0000514;2.72e-09;43!CL:0000355;3.68e-09;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;7.31e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;7.31e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,7.41e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.63e-18!83;UBERON:0002329!3.63e-18!83;UBERON:0003077!3.63e-18!83;UBERON:0003059!3.63e-18!83;UBERON:0007282!3.63e-18!83;UBERON:0009618!3.63e-18!83;UBERON:0007285!3.63e-18!83;UBERON:0004290!2.71e-16!70;UBERON:0002385!9.09e-16!63;UBERON:0001015!9.09e-16!63;UBERON:0000383!9.09e-16!63;UBERON:0001134!1.07e-15!61;UBERON:0002036!1.07e-15!61;UBERON:0003082!1.07e-15!61;UBERON:0005256!3.23e-15!143;UBERON:0000486!2.89e-13!82;UBERON:0002100!1.91e-10!216;UBERON:0000475!2.25e-09!365;UBERON:0003102!2.85e-08!95;UBERON:0001013!6.32e-08!14;UBERON:0003104!1.12e-07!238;UBERON:0009142!1.12e-07!238;UBERON:0000490!1.52e-07!138;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45;UBERON:0004872!2.23e-07!84 | |ontology_enrichment_uberon=UBERON:0000914!3.63e-18!83;UBERON:0002329!3.63e-18!83;UBERON:0003077!3.63e-18!83;UBERON:0003059!3.63e-18!83;UBERON:0007282!3.63e-18!83;UBERON:0009618!3.63e-18!83;UBERON:0007285!3.63e-18!83;UBERON:0004290!2.71e-16!70;UBERON:0002385!9.09e-16!63;UBERON:0001015!9.09e-16!63;UBERON:0000383!9.09e-16!63;UBERON:0001134!1.07e-15!61;UBERON:0002036!1.07e-15!61;UBERON:0003082!1.07e-15!61;UBERON:0005256!3.23e-15!143;UBERON:0000486!2.89e-13!82;UBERON:0002100!1.91e-10!216;UBERON:0000475!2.25e-09!365;UBERON:0003102!2.85e-08!95;UBERON:0001013!6.32e-08!14;UBERON:0003104!1.12e-07!238;UBERON:0009142!1.12e-07!238;UBERON:0000490!1.52e-07!138;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45;UBERON:0004872!2.23e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.85e-10;198!UBERON:0001013;6.44e-09;14!UBERON:0002385;8.20e-08;31!UBERON:0001015;8.20e-08;31!UBERON:0000383;8.20e-08;31!UBERON:0002204;1.70e-07;70 | |ontology_enrichment_uberon_v019=UBERON:0002384;1.85e-10;198!UBERON:0001013;6.44e-09;14!UBERON:0002385;8.20e-08;31!UBERON:0001015;8.20e-08;31!UBERON:0000383;8.20e-08;31!UBERON:0002204;1.70e-07;70 | ||
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| ||
|short_description=p6@COL1A1 | |short_description=p6@COL1A1 | ||
}} | }} |
Latest revision as of 23:55, 15 September 2015
Short description: | p6@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 100bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.24e-29 | 76 |
muscle precursor cell | 7.29e-17 | 58 |
myoblast | 7.29e-17 | 58 |
multi-potent skeletal muscle stem cell | 7.29e-17 | 58 |
muscle cell | 3.61e-16 | 55 |
multi fate stem cell | 2.66e-15 | 427 |
somatic stem cell | 2.95e-14 | 433 |
stem cell | 1.68e-13 | 441 |
smooth muscle cell | 5.31e-13 | 43 |
smooth muscle myoblast | 5.31e-13 | 43 |
electrically responsive cell | 7.04e-13 | 61 |
electrically active cell | 7.04e-13 | 61 |
preadipocyte | 2.01e-09 | 12 |
skin fibroblast | 2.07e-09 | 23 |
vascular associated smooth muscle cell | 1.91e-08 | 32 |
stromal cell | 2.51e-08 | 28 |
mesodermal cell | 6.05e-08 | 121 |
connective tissue cell | 8.16e-08 | 361 |
extracellular matrix secreting cell | 2.94e-07 | 15 |
mesenchymal stem cell of adipose | 5.57e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.06e-17 | 73 |
somite | 1.19e-17 | 71 |
presomitic mesoderm | 1.19e-17 | 71 |
presumptive segmental plate | 1.19e-17 | 71 |
dermomyotome | 1.19e-17 | 71 |
trunk paraxial mesoderm | 1.19e-17 | 71 |
epithelial vesicle | 1.28e-17 | 78 |
paraxial mesoderm | 4.17e-17 | 72 |
presumptive paraxial mesoderm | 4.17e-17 | 72 |
skeletal muscle tissue | 8.59e-17 | 62 |
striated muscle tissue | 8.59e-17 | 62 |
myotome | 8.59e-17 | 62 |
muscle tissue | 2.06e-16 | 64 |
musculature | 2.06e-16 | 64 |
musculature of body | 2.06e-16 | 64 |
multilaminar epithelium | 5.99e-14 | 83 |
mesenchyme | 7.17e-14 | 160 |
entire embryonic mesenchyme | 7.17e-14 | 160 |
trunk mesenchyme | 2.15e-13 | 122 |
adipose tissue | 6.89e-09 | 14 |
integument | 8.98e-09 | 46 |
integumental system | 8.98e-09 | 46 |
connective tissue | 2.38e-08 | 371 |
mesoderm | 3.43e-08 | 315 |
mesoderm-derived structure | 3.43e-08 | 315 |
presumptive mesoderm | 3.43e-08 | 315 |
splanchnic layer of lateral plate mesoderm | 1.69e-07 | 83 |
surface structure | 1.99e-07 | 99 |
trunk | 2.21e-07 | 199 |
unilaminar epithelium | 2.22e-07 | 148 |
skin of body | 7.77e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.41e-07 | 14 |