FFCP PHASE1:Hg19::chr6:42016349..42016363,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_ENST00000505672_5end | |association_with_transcript=50bp_to_ENST00000505672_5end | ||
|cluster_id=chr6:42016349..42016363,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_8_at_CCND3_5end | |description=CAGE_peak_8_at_CCND3_5end | ||
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|ontology_enrichment_celltype=CL:0000791!1.78e-13!18;CL:0000789!1.78e-13!18;CL:0002420!1.78e-13!18;CL:0002419!1.78e-13!18;CL:0000790!1.78e-13!18;CL:0000084!1.58e-09!25;CL:0000827!1.58e-09!25;CL:0000625!3.48e-09!11;CL:0000838!4.69e-08!52;CL:0000542!1.11e-07!53;CL:0000051!1.11e-07!53 | |ontology_enrichment_celltype=CL:0000791!1.78e-13!18;CL:0000789!1.78e-13!18;CL:0002420!1.78e-13!18;CL:0002419!1.78e-13!18;CL:0000790!1.78e-13!18;CL:0000084!1.58e-09!25;CL:0000827!1.58e-09!25;CL:0000625!3.48e-09!11;CL:0000838!4.69e-08!52;CL:0000542!1.11e-07!53;CL:0000051!1.11e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.24e-22;18!CL:0000789;1.24e-22;18!CL:0002419;1.24e-22;18!CL:0000084;3.58e-17;25!CL:0000625;4.08e-14;11!CL:0000624;5.73e-12;6!CL:0000542;2.28e-09;53!CL:0000898;1.01e-07;3 | |ontology_enrichment_celltype_v019=CL:0000791;1.24e-22;18!CL:0000789;1.24e-22;18!CL:0002419;1.24e-22;18!CL:0000084;3.58e-17;25!CL:0000625;4.08e-14;11!CL:0000624;5.73e-12;6!CL:0000542;2.28e-09;53!CL:0000898;1.01e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.62e-23,18;CL:0000789,6.62e-23,18;CL:0002420,6.62e-23,18;CL:0002419,6.62e-23,18;CL:0000790,6.62e-23,18;CL:0000838,1.04e-17,52;CL:0000084,2.04e-17,25;CL:0000827,2.04e-17,25;CL:0000542,3.11e-17,53;CL:0000051,3.11e-17,53;CL:0000625,3.97e-14,11;CL:0000624,2.75e-12,6;CL:0000898,9.39e-08,3;CL:0002087,9.85e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;1.24e-22;18!CL:0000051;2.28e-09;53 | |ontology_enrichment_development_v019=CL:0000790;1.24e-22;18!CL:0000051;2.28e-09;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.69e-14!115 | |ontology_enrichment_uberon=UBERON:0007023!1.69e-14!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.37e-09;15!UBERON:0000179;7.37e-09;15!UBERON:0000463;7.37e-09;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;7.37e-09;15!UBERON:0000179;7.37e-09;15!UBERON:0000463;7.37e-09;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.07e-08,15;UBERON:0000179,1.07e-08,15;UBERON:0000463,1.07e-08,15;UBERON:0003408,2.71e-07,10 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0.697801167972428,0.436882744260345,0.263766978228454,0.74259811776028,1.65698687863958,0,0,0,0,0.246242116153576,0.408001382488506,2.19418305034661,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0.387336002901508,0,0,1.10799081706375,0.802177789880567,0.651032612147555,0.895661896959697,0.32389366601898,0.515151135268373,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0.211255286311942,0,0.209658645508376,0.336985893439485,0,0,0.570025487482497,0,0,1.75996244461323,1.63841583378639,0,0.853460445133014,0,0,1.32208974556972,0,4.55370375287559,2.34894875748376,2.6759125968766,1.32171328579026,0,0.526768169550154,1.57367816091066,1.57204305099666,1.64481199199607,0.501559486172034,6.8443675993054,5.20792586308207,1.94826728407911,0.445641827540694,3.82987679717288,2.65840673500345,1.08321545506006,0.25618263945135,0.910415432919148,0.657751618414705,1.93445012450094,1.15921234294021,7.1177550317789,8.29376567078111,1.04535523804977,0.453237370790265,4.98186641682498,5.15441168223945,2.27717722817553,1.27426165729639,2.60433381542567,0.950452044448374,2.25862678616659,2.94369205655162,2.49861453104692,2.13099526839615,4.10563998460523,2.21767417547206,0.802320587350522,2.89648807765598,0,0,0,0,0,0,0,0,0.661743720148475,0.221729397462564,1.05401742831751,0.72038491523742,0.728590576585084,0,0.324547393654683,0,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0.838998872419812,0,0.417989933073621,0.258416759169329,0,0,0.402829317109147,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0.404132016209064,0.490385709340376,1.96764655938411,1.15235184896,1.17160715916898,0,0.570471821544449,0.298897361103602,0,0,0,0.61246251376468,0.245668634623536,0.929932030581889,0,0,0.910161361938026,2.15585442544872,1.34668891163253,0.375355559615893,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,0.982827216677626,0,0.441463099414651,0.245976877086227,0.343135620597051,0.109750285408626,0,0.100528972411631,0.462942225792648,2.6064664424826,1.03993478527958,0,0,1.17408694235822,0,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0.290633938513962,0,0,0,0.829312462163088,0,0.12624243342638,0,0.381988425558278,0,0,0,0,0,0.336393253036082,0.87192013766656,0.2933531432838,0,0,0,0,0,1.54324424557285,1.41849132023278,0.799266537048298,0.857867961948885,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.289562613335158,1.02738161275192,0,0.224170287987055,1.77327684181734,1.50939302401662,2.43851768931522,0,0,0,0,0,0.749007023947182,0,0,0.613457458595699,4.00136416847742,1.89885516589815,0,0,0,0,1.80567659836631,2.27407504055985,2.0694614258501,0,0,0.0868836144680828,4.11182430671755,1.71571711905428,2.27444828735176,1.50999940573032,2.02782359826544,0,1.66435439510497,0.604780586659361,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0,0,0,0,1.46139224653261,0.105551628892876,1.13733384070897,0,0.431831832204279,0,1.62567862526312,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0.325378394664303,1.03041011647722,0,0,0,0,0,0,0.308097234229289,0,0.137836572484531,0.214840489736547,0.435050081742686,0.0852266274161009,0.178064071293475,0.165284915360978,0.384380134730212,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0.762520775695299,1.27948895655667,2.1396949401696,0,0,0.359744915166629,0.274537029736055,0.353437207037059,0,0,0,0.975267478179181,0.243713489631284,0,0,0.141405431953713,0,0,0,0.438450885253763,1.73632660280006,1.9676842561399,0,0,0,0,0.196498082026242,0,0,0,0,1.89736586882858,4.89908608342976,0,0.670302275535787,0,0.470719003883896,0,0,0,0,0.507447609232169,1.52927441428475,1.13929437434833,1.19115887728894,1.23408681925858,2.59389324477087,0.540031437238115,0.79312517629427,0.106824071127473,0,0,0,0,1.56512055366511,0.318852545457645,0.199579371432817,0,0.211673582723883,0,0,0,0,0,0.677167111206413,0,0,0,0,0,0,0,0,0.556812347790485,0,0.270455678475983,0,0,0,0.439524537815682,0.121360521749513,0,0,0,0,0.307160702099232,0,0,0.222617410045812,0,0.422250816255987,0.796991953004279,1.10513566212459,0.251932747854276,0.102268682502155,0,0,0,0,0,0.493217028184668,2.3948309234694,0,0,0.463840490809256,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0.295547618953547,0.438770794307945,0,0,0.538651809526579,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0.353830258013357,2.4441205797345,0,0,0,0.202203398942031,1.60515529459758,0,0,0,0,0.394584402849391,1.20990716048664,0,0.189559738885464,0.150323419414493,0,0,0,0.313932918407225,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0.397429223405979,0.189932387867636,0,0,0.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| ||
|short_description=p8@CCND3 | |short_description=p8@CCND3 | ||
}} | }} |
Latest revision as of 19:33, 18 September 2015
Short description: | p8@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CCND3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 50bp_to_ENST00000505672_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.62e-23 | 18 |
alpha-beta T cell | 6.62e-23 | 18 |
immature T cell | 6.62e-23 | 18 |
mature T cell | 6.62e-23 | 18 |
immature alpha-beta T cell | 6.62e-23 | 18 |
lymphoid lineage restricted progenitor cell | 1.04e-17 | 52 |
T cell | 2.04e-17 | 25 |
pro-T cell | 2.04e-17 | 25 |
lymphocyte | 3.11e-17 | 53 |
common lymphoid progenitor | 3.11e-17 | 53 |
CD8-positive, alpha-beta T cell | 3.97e-14 | 11 |
CD4-positive, alpha-beta T cell | 2.75e-12 | 6 |
naive T cell | 9.39e-08 | 3 |
nongranular leukocyte | 9.85e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
blood | 1.07e-08 | 15 |
haemolymphatic fluid | 1.07e-08 | 15 |
organism substance | 1.07e-08 | 15 |
gland of gut | 2.71e-07 | 10 |