FFCP PHASE1:Hg19::chr4:109066018..109066022,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:109066018..109066022,- | |||
|coexpression_cluster_id=C4357 | |coexpression_cluster_id=C4357 | ||
|description=CAGE_peak_at_chr4:109066018..109066022,- | |description=CAGE_peak_at_chr4:109066018..109066022,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!2.95e-16!25;CL:0000827!2.95e-16!25;CL:0000791!1.79e-15!18;CL:0000789!1.79e-15!18;CL:0002420!1.79e-15!18;CL:0002419!1.79e-15!18;CL:0000790!1.79e-15!18;CL:0000542!7.98e-14!53;CL:0000051!7.98e-14!53;CL:0000625!3.95e-13!11;CL:0000838!5.94e-13!52;CL:0000080!1.68e-10!6 | |ontology_enrichment_celltype=CL:0000084!2.95e-16!25;CL:0000827!2.95e-16!25;CL:0000791!1.79e-15!18;CL:0000789!1.79e-15!18;CL:0002420!1.79e-15!18;CL:0002419!1.79e-15!18;CL:0000790!1.79e-15!18;CL:0000542!7.98e-14!53;CL:0000051!7.98e-14!53;CL:0000625!3.95e-13!11;CL:0000838!5.94e-13!52;CL:0000080!1.68e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.31e-17;25!CL:0000791;3.11e-11;18!CL:0000789;3.11e-11;18!CL:0002419;3.11e-11;18!CL:0000625;1.08e-10;11 | |ontology_enrichment_celltype_v019=CL:0000084;1.31e-17;25!CL:0000791;3.11e-11;18!CL:0000789;3.11e-11;18!CL:0002419;3.11e-11;18!CL:0000625;1.08e-10;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.00e-17,25;CL:0000827,1.00e-17,25;CL:0000791,2.44e-11,18;CL:0000789,2.44e-11,18;CL:0002420,2.44e-11,18;CL:0002419,2.44e-11,18;CL:0000790,2.44e-11,18;CL:0000625,7.99e-11,11;CL:0000838,2.36e-08,52;CL:0000542,3.45e-08,53;CL:0000051,3.45e-08,53 | |||
|ontology_enrichment_development_v019=CL:0000790;3.11e-11;18 | |ontology_enrichment_development_v019=CL:0000790;3.11e-11;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.08e-10!15;UBERON:0000179!1.08e-10!15;UBERON:0000463!1.08e-10!15;UBERON:0007023!3.12e-08!115 | |ontology_enrichment_uberon=UBERON:0000178!1.08e-10!15;UBERON:0000179!1.08e-10!15;UBERON:0000463!1.08e-10!15;UBERON:0007023!3.12e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.07e-26;2!UBERON:0005058;4.07e-26;2!UBERON:0009113;4.07e-26;2!UBERON:0004177;4.78e-11;5!UBERON:0005057;4.78e-11;5 | |ontology_enrichment_uberon_v019=UBERON:0002370;4.07e-26;2!UBERON:0005058;4.07e-26;2!UBERON:0009113;4.07e-26;2!UBERON:0004177;4.78e-11;5!UBERON:0005057;4.78e-11;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.34e-13,4;UBERON:0005058,1.34e-13,4;UBERON:0009113,1.34e-13,4;UBERON:0003295,1.34e-13,4;UBERON:0005562,1.34e-13,4;UBERON:0003351,2.26e-09,6;UBERON:0004177,3.70e-08,7;UBERON:0005057,3.70e-08,7 | |||
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| ||
|short_description=p@chr4:109066018..109066022,- | |short_description=p@chr4:109066018..109066022,- | ||
}} | }} |
Latest revision as of 00:46, 30 July 2015
Short description: | p@chr4:109066018..109066022, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:109066018..109066022, - |
Coexpression cluster: | C4357_acute_thymus_chronic_CD4_Hodgkin_CD8_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.00e-17 | 25 |
pro-T cell | 1.00e-17 | 25 |
mature alpha-beta T cell | 2.44e-11 | 18 |
alpha-beta T cell | 2.44e-11 | 18 |
immature T cell | 2.44e-11 | 18 |
mature T cell | 2.44e-11 | 18 |
immature alpha-beta T cell | 2.44e-11 | 18 |
CD8-positive, alpha-beta T cell | 7.99e-11 | 11 |
lymphoid lineage restricted progenitor cell | 2.36e-08 | 52 |
lymphocyte | 3.45e-08 | 53 |
common lymphoid progenitor | 3.45e-08 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.34e-13 | 4 |
hemolymphoid system gland | 1.34e-13 | 4 |
thymic region | 1.34e-13 | 4 |
pharyngeal gland | 1.34e-13 | 4 |
thymus primordium | 1.34e-13 | 4 |
pharyngeal epithelium | 2.26e-09 | 6 |
hemopoietic organ | 3.70e-08 | 7 |
immune organ | 3.70e-08 | 7 |