FFCP PHASE1:Hg19::chr12:70132560..70132578,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=117177 | |EntrezGene=117177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16508 | |HGNC=16508 | ||
|TSSclassifier=strong | |||
|UniProt=Q96QF0 | |UniProt=Q96QF0 | ||
|association_with_transcript=-52bp_to_NM_022456,NM_175624,uc001svl.1,uc001svm.2,uc001svn.2,uc001svo.2_5end | |association_with_transcript=-52bp_to_NM_022456,NM_175624,uc001svl.1,uc001svm.2,uc001svn.2,uc001svo.2_5end | ||
|cluster_id=chr12:70132560..70132578,+ | |||
|description=CAGE_peak_3_at_RAB3IP_5end | |description=CAGE_peak_3_at_RAB3IP_5end | ||
|id=chr12:70132560..70132578,+ | |id=chr12:70132560..70132578,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000764;1.11e-07;2!CL:0000558;1.11e-07;2 | |ontology_enrichment_celltype_v019=CL:0000764;1.11e-07;2!CL:0000558;1.11e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,2.60e-07,2;CL:0000765,2.60e-07,2;CL:0000050,2.60e-07,2;CL:0000038,2.60e-07,2;CL:0000558,2.60e-07,2;CL:0000547,2.60e-07,2;CL:0000549,2.60e-07,2;CL:0000550,2.60e-07,2;CL:0000552,2.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.96e-12;3!UBERON:0007297;4.50e-08;2 | |ontology_enrichment_development_v019=UBERON:0006215;2.96e-12;3!UBERON:0007297;4.50e-08;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.96e-18!115;UBERON:0001049!1.69e-12!57;UBERON:0005068!1.69e-12!57;UBERON:0006241!1.69e-12!57;UBERON:0007135!1.69e-12!57;UBERON:0005743!3.81e-12!86;UBERON:0003075!1.08e-11!86;UBERON:0007284!1.08e-11!86;UBERON:0002346!2.55e-11!90;UBERON:0001017!1.30e-10!82;UBERON:0000073!4.10e-10!94;UBERON:0001016!4.10e-10!94;UBERON:0002616!9.18e-10!59;UBERON:0000955!1.99e-09!69;UBERON:0006238!1.99e-09!69;UBERON:0003056!1.36e-07!61;UBERON:0003080!2.30e-07!42;UBERON:0002020!2.45e-07!34;UBERON:0003528!2.45e-07!34;UBERON:0003076!3.75e-07!15;UBERON:0003057!3.75e-07!15;UBERON:0001893!3.97e-07!34;UBERON:0002791!6.62e-07!33;UBERON:0002780!7.59e-07!41;UBERON:0001890!7.59e-07!41;UBERON:0006240!7.59e-07!41 | |ontology_enrichment_uberon=UBERON:0007023!6.96e-18!115;UBERON:0001049!1.69e-12!57;UBERON:0005068!1.69e-12!57;UBERON:0006241!1.69e-12!57;UBERON:0007135!1.69e-12!57;UBERON:0005743!3.81e-12!86;UBERON:0003075!1.08e-11!86;UBERON:0007284!1.08e-11!86;UBERON:0002346!2.55e-11!90;UBERON:0001017!1.30e-10!82;UBERON:0000073!4.10e-10!94;UBERON:0001016!4.10e-10!94;UBERON:0002616!9.18e-10!59;UBERON:0000955!1.99e-09!69;UBERON:0006238!1.99e-09!69;UBERON:0003056!1.36e-07!61;UBERON:0003080!2.30e-07!42;UBERON:0002020!2.45e-07!34;UBERON:0003528!2.45e-07!34;UBERON:0003076!3.75e-07!15;UBERON:0003057!3.75e-07!15;UBERON:0001893!3.97e-07!34;UBERON:0002791!6.62e-07!33;UBERON:0002780!7.59e-07!41;UBERON:0001890!7.59e-07!41;UBERON:0006240!7.59e-07!41 | ||
|ontology_enrichment_uberon_v019=UBERON:0002680;2.19e-10;9!UBERON:0001895;2.19e-10;9!UBERON:0004732;9.67e-10;13!UBERON:0003135;4.52e-08;11!UBERON:0004733;1.10e-07;12!UBERON:0002028;1.10e-07;12!UBERON:0000473;1.33e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0002680;2.19e-10;9!UBERON:0001895;2.19e-10;9!UBERON:0004732;9.67e-10;13!UBERON:0003135;4.52e-08;11!UBERON:0004733;1.10e-07;12!UBERON:0002028;1.10e-07;12!UBERON:0000473;1.33e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.00e-14,114;UBERON:0002680,2.41e-10,9;UBERON:0001895,2.41e-10,9;UBERON:0010092,2.41e-10,9;UBERON:0004732,9.46e-10,13;UBERON:0000966,2.56e-09,6;UBERON:0005388,2.56e-09,6;UBERON:0001802,2.56e-09,6;UBERON:0001781,2.33e-08,4;UBERON:0003135,4.22e-08,11;UBERON:0000473,1.18e-07,8;UBERON:0004733,1.18e-07,12;UBERON:0002028,1.18e-07,12;UBERON:0007277,1.18e-07,12;UBERON:0003075,4.41e-07,82;UBERON:0007284,4.41e-07,82;UBERON:0000073,6.35e-07,53;UBERON:0002616,6.35e-07,53 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0.487932798790507,0.246242116153576,0.408001382488506,0,0,0.273748850145768,0,0.305653622991805,0.410502947249729,0.550975469195755,0.393364276848904,0,0.619264493264304,0,0.6024118375565,0,0.774672005803016,0.284338464974843,0,0.553995408531877,0.601633342410425,0,0,0,0,0,0,0.727752183563449,0.232429036905685,0,0,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0,0.224723484445085,0.918251677112708,0.641858054152187,0.639337125799041,0.329851300186716,0,0.426224750532694,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0.212604299965044,0.419317291016752,0.22465726229299,0,0.32145117339416,0,0,0,0,1.63841583378639,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,2.27685187643779,2.34894875748376,1.91136614062614,0,0.560508562981536,0.263384084775077,0.393419540227666,0.393010762749165,0.411202997999018,0.334372990781356,0,0.946895611469467,0,0,0.589211814949674,0.443067789167242,0,0,0.130059347559878,0.164437904603676,0,0,0.296573126324121,0,0,0.113309342697566,0,0.34362744548263,0.253019692019503,0.95569624297229,0,0,0.451725357233318,0.255973222308837,0,0,1.64225599384209,1.00803371612366,0,0.289648807765598,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0.263504357079378,1.96468613246569,0.364295288292542,0.741568885568859,0,0.174129737299267,0,0.476981248610684,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0.71153252537342,0,0,0,0,0,0,0.17859945656816,0.44905874525234,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0.264818361626438,0,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0.234321431833797,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0.57978255948989,0.272746120590835,0,0.487894824518382,0.265059536642971,0.464775771478074,0,0.504641701751257,0,0,0.643240938192885,0,0,0,0.118306800039844,0.168584690078102,0,0.220587945464788,0,0,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0.514703430895577,0.219500570817251,1.1240175325762,0.100528972411631,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,1.58040879591855,0,0,0,0,0.93733833986777,0,0,0.179117045405697,0,0.383382679165211,0.492663237895943,0.176096868026452,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.602878754119172,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0.431255149719035,0.256686072559497,1.01637849688985,0,0,0.335032530668698,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.426910231213777,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0.177561725313127,0.164254312027618,0,0,0.241718899183244,0,0.460404944679482,0,0,0,1.35359883872224,0,0,1.46139224653261,0.422206515571503,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0.223874754722178,1.09629938322967,1.0457418040996,0.256450125116389,1.64007322849853,1.30151357865721,0.412164046590889,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0.330569830721956,0,0.382838137483752,0.30347334256665,0.464845549297286,0,0,0,0.532306030317022,0,0,0.143124886741991,0.744316738719335,0,0,0,0,0,0.78494864019923,0,0.54907405947211,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0.753150406214233,0,0,0,0.229723400206959,1.01489521846434,0,0,0.476463550915578,0,0,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0,0.569134746787313,0.159426272728822,0,0,0,0,0,0,0.156679895773023,2.50634477090067,0,0.1605880751037,0.201799707191048,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,0.561421621224659,0.146508179271894,0.485442086998054,0.222886768554957,0.568272293612826,0,0.593929361665277,0,0.994147647766298,0.562677665642051,0.111308705022906,0.824019371133798,0.211125408127993,0.597743964753209,0,1.0077309914171,0,0.123084805461069,0,0.359473404589307,0.179021174675609,0,0.197286811273867,2.3948309234694,0,2.90799823828566,0.834912883456661,0,1.5625665665114,0.61221999997337,2.89999830173917,0,0,0,0,0.291604613383254,0.173624994933292,0,0.361789315876224,3.05163472634166,3.64911557773041,3.54657142744257,1.09692698576986,0,0,0.230850775511391,0.341826167541004,0,0.179515288819544,0.325942115766024,0,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0.158936578980379,0.421996129056054,0.816164040795739,0.424059214301822,0,0,0.265372693510018,0,0.593042257361244,0,0.208843899010911,0.539209063845416,0,0,0.547364367646998,0.978323094660449,0.485560759068186,0.394584402849391,0,0.61214552326098,0.31593289814244,0.150323419414493,0.518440956986236,0,0,0,0,0,0.554698692052555,0.173559738335131,0.195984794828755,0.522355239482415,1.22308667769421,0.51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| ||
|short_description=p3@RAB3IP | |short_description=p3@RAB3IP | ||
}} | }} |
Latest revision as of 06:47, 20 September 2015
Short description: | p3@RAB3IP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB3IP_5end |
Coexpression cluster: | NA |
Association with transcript: | -52bp_to_NM_022456, NM_175624, uc001svl.1, uc001svm.2, uc001svn.2, uc001svo.2_5end |
EntrezGene: | RAB3IP |
HGNC: | 16508 |
UniProt: | Q96QF0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 2.60e-07 | 2 |
erythroblast | 2.60e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 2.60e-07 | 2 |
erythroid progenitor cell | 2.60e-07 | 2 |
reticulocyte | 2.60e-07 | 2 |
proerythroblast | 2.60e-07 | 2 |
basophilic erythroblast | 2.60e-07 | 2 |
polychromatophilic erythroblast | 2.60e-07 | 2 |
orthochromatic erythroblast | 2.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.00e-14 | 114 |
regional part of metencephalon | 2.41e-10 | 9 |
metencephalon | 2.41e-10 | 9 |
future metencephalon | 2.41e-10 | 9 |
segmental subdivision of nervous system | 9.46e-10 | 13 |
retina | 2.56e-09 | 6 |
photoreceptor array | 2.56e-09 | 6 |
posterior segment of eyeball | 2.56e-09 | 6 |
layer of retina | 2.33e-08 | 4 |
male reproductive organ | 4.22e-08 | 11 |
testis | 1.18e-07 | 8 |
segmental subdivision of hindbrain | 1.18e-07 | 12 |
hindbrain | 1.18e-07 | 12 |
presumptive hindbrain | 1.18e-07 | 12 |
neural plate | 4.41e-07 | 82 |
presumptive neural plate | 4.41e-07 | 82 |
regional part of nervous system | 6.35e-07 | 53 |
regional part of brain | 6.35e-07 | 53 |