FFCP PHASE1:Hg19::chr2:109403193..109403270,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=165055 | |EntrezGene=165055 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26531 | |HGNC=26531 | ||
|TSSclassifier=strong | |||
|UniProt=Q96M89,F8WF51 | |UniProt=Q96M89,F8WF51 | ||
|association_with_transcript=0bp_to_ENST00000295124,ENST00000409529,ENST00000412964,ENST00000447782,ENST00000470608,NM_144978,uc002ten.1,uc002teo.1,uc002tep.1,uc010fjm.1_5end | |association_with_transcript=0bp_to_ENST00000295124,ENST00000409529,ENST00000412964,ENST00000447782,ENST00000470608,NM_144978,uc002ten.1,uc002teo.1,uc002tep.1,uc010fjm.1_5end | ||
|cluster_id=chr2:109403193..109403270,+ | |||
|coexpression_cluster_id=C109 | |coexpression_cluster_id=C109 | ||
|description=CAGE_peak_1_at_CCDC138_5end | |description=CAGE_peak_1_at_CCDC138_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000542!3.57e-09!53;CL:0000051!3.57e-09!53;CL:0000838!9.12e-09!52 | |ontology_enrichment_celltype=CL:0000542!3.57e-09!53;CL:0000051!3.57e-09!53;CL:0000838!9.12e-09!52 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.51e-09,53;CL:0000051,3.51e-09,53;CL:0000838,8.98e-09,52 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!9.33e-50!235;DOID:14566!1.13e-46!239;DOID:0050687!1.13e-27!143;DOID:305!1.08e-24!106;DOID:0050686!2.30e-23!137;DOID:2531!1.00e-17!51;DOID:0060083!1.00e-17!51;DOID:1240!1.12e-13!39;DOID:8692!9.37e-11!31;DOID:3095!9.03e-07!22;DOID:2994!9.03e-07!22 | |ontology_enrichment_disease=DOID:162!9.33e-50!235;DOID:14566!1.13e-46!239;DOID:0050687!1.13e-27!143;DOID:305!1.08e-24!106;DOID:0050686!2.30e-23!137;DOID:2531!1.00e-17!51;DOID:0060083!1.00e-17!51;DOID:1240!1.12e-13!39;DOID:8692!9.37e-11!31;DOID:3095!9.03e-07!22;DOID:2994!9.03e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.97e-11;39!DOID:2531;2.33e-11;51!DOID:0060083;2.33e-11;51!DOID:8692;1.73e-10;31!DOID:305;6.21e-08;106!DOID:0050687;2.52e-07;143!DOID:3095;4.93e-07;22!DOID:2994;4.93e-07;22 | |ontology_enrichment_disease_v019=DOID:1240;1.97e-11;39!DOID:2531;2.33e-11;51!DOID:0060083;2.33e-11;51!DOID:8692;1.73e-10;31!DOID:305;6.21e-08;106!DOID:0050687;2.52e-07;143!DOID:3095;4.93e-07;22!DOID:2994;4.93e-07;22 | ||
|ontology_enrichment_disease_v019_2=DOID:162,6.20e-50,235;DOID:14566,5.68e-47,239;DOID:0050687,8.86e-28,143;DOID:305,1.03e-24,106;DOID:0050686,1.93e-23,137;DOID:2531,9.68e-18,51;DOID:0060083,9.68e-18,51;DOID:1240,1.09e-13,39;DOID:8692,9.19e-11,31;DOID:3095,7.78e-07,22;DOID:2994,7.78e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.42e-09!94;UBERON:0001016!1.42e-09!94;UBERON:0001017!3.58e-08!82;UBERON:0005743!5.95e-08!86 | |ontology_enrichment_uberon=UBERON:0000073!1.42e-09!94;UBERON:0001016!1.42e-09!94;UBERON:0001017!3.58e-08!82;UBERON:0005743!5.95e-08!86 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.65e-10,89;UBERON:0001017,1.73e-08,81;UBERON:0011216,1.41e-07,223 | |||
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| ||
|short_description=p1@CCDC138 | |short_description=p1@CCDC138 | ||
}} | }} |
Latest revision as of 06:56, 16 September 2015
Short description: | p1@CCDC138 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC138_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 0bp_to_ENST00000295124, ENST00000409529, ENST00000412964, ENST00000447782, ENST00000470608, NM_144978, uc002ten.1, uc002teo.1, uc002tep.1, uc010fjm.1_5end |
EntrezGene: | CCDC138 |
HGNC: | 26531 |
UniProt: | Q96M89F8WF51 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.51e-09 | 53 |
common lymphoid progenitor | 3.51e-09 | 53 |
lymphoid lineage restricted progenitor cell | 8.98e-09 | 52 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.65e-10 | 89 |
central nervous system | 1.73e-08 | 81 |
organ system subdivision | 1.41e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.20e-50 | 235 |
disease of cellular proliferation | 5.68e-47 | 239 |
cell type cancer | 8.86e-28 | 143 |
carcinoma | 1.03e-24 | 106 |
organ system cancer | 1.93e-23 | 137 |
hematologic cancer | 9.68e-18 | 51 |
immune system cancer | 9.68e-18 | 51 |
leukemia | 1.09e-13 | 39 |
myeloid leukemia | 9.19e-11 | 31 |
germ cell and embryonal cancer | 7.78e-07 | 22 |
germ cell cancer | 7.78e-07 | 22 |