FFCP PHASE1:Hg19::chr4:41750895..41750904,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8929 | |EntrezGene=8929 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9143 | |HGNC=9143 | ||
|TSSclassifier=strong | |||
|UniProt=Q99453 | |UniProt=Q99453 | ||
|association_with_transcript=82bp_to_ENST00000226382,NM_003924,uc003gwf.3_5end | |association_with_transcript=82bp_to_ENST00000226382,NM_003924,uc003gwf.3_5end | ||
|cluster_id=chr4:41750895..41750904,- | |||
|coexpression_cluster_id=C1368 | |coexpression_cluster_id=C1368 | ||
|description=CAGE_peak_6_at_PHOX2B_5end | |description=CAGE_peak_6_at_PHOX2B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;2.59e-79;5!CL:0002321;6.34e-27;15 | |ontology_enrichment_celltype_v019=CL:0000333;2.59e-79;5!CL:0002321;6.34e-27;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000333,9.99e-10,41;CL:0000133,5.78e-07,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:169!9.69e-28!6;DOID:171!9.15e-17!10;DOID:3095!1.02e-07!22;DOID:2994!1.02e-07!22 | |ontology_enrichment_disease=DOID:169!9.69e-28!6;DOID:171!9.15e-17!10;DOID:3095!1.02e-07!22;DOID:2994!1.02e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:169;3.10e-66;6!DOID:171;4.75e-40;10!DOID:3095;1.52e-18;22!DOID:2994;1.52e-18;22!DOID:5409;1.59e-07;4 | |ontology_enrichment_disease_v019=DOID:169;3.10e-66;6!DOID:171;4.75e-40;10!DOID:3095;1.52e-18;22!DOID:2994;1.52e-18;22!DOID:5409;1.59e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:169,2.62e-66,6;DOID:171,4.30e-40,10;DOID:3095,1.45e-18,22;DOID:2994,1.45e-18,22;DOID:5409,1.80e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000013!3.26e-33!5;UBERON:0002410!3.26e-33!5;UBERON:0000010!1.34e-18!8;UBERON:0001896!8.02e-14!3;UBERON:0005290!8.02e-14!3;UBERON:0010096!8.02e-14!3;UBERON:0000160!2.05e-12!27;UBERON:0002298!1.44e-11!8;UBERON:0002135!3.28e-11!1;UBERON:0001154!3.63e-11!1;UBERON:0001153!3.63e-11!1;UBERON:0005409!1.45e-09!35;UBERON:0004907!5.28e-09!5;UBERON:0000073!7.01e-09!94;UBERON:0001016!7.01e-09!94;UBERON:0000059!7.78e-09!11;UBERON:0004733!6.90e-08!12;UBERON:0002028!6.90e-08!12;UBERON:0007277!6.90e-08!12;UBERON:0004732!2.56e-07!13;UBERON:0000063!4.45e-07!97 | |ontology_enrichment_uberon=UBERON:0000013!3.26e-33!5;UBERON:0002410!3.26e-33!5;UBERON:0000010!1.34e-18!8;UBERON:0001896!8.02e-14!3;UBERON:0005290!8.02e-14!3;UBERON:0010096!8.02e-14!3;UBERON:0000160!2.05e-12!27;UBERON:0002298!1.44e-11!8;UBERON:0002135!3.28e-11!1;UBERON:0001154!3.63e-11!1;UBERON:0001153!3.63e-11!1;UBERON:0005409!1.45e-09!35;UBERON:0004907!5.28e-09!5;UBERON:0000073!7.01e-09!94;UBERON:0001016!7.01e-09!94;UBERON:0000059!7.78e-09!11;UBERON:0004733!6.90e-08!12;UBERON:0002028!6.90e-08!12;UBERON:0007277!6.90e-08!12;UBERON:0004732!2.56e-07!13;UBERON:0000063!4.45e-07!97 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.59e-79;5!UBERON:0002410;2.59e-79;5!UBERON:0000010;2.03e-44;8!UBERON:0000059;5.92e-10;11!UBERON:0001052;1.59e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000013;2.59e-79;5!UBERON:0002410;2.59e-79;5!UBERON:0000010;2.03e-44;8!UBERON:0000059;5.92e-10;11!UBERON:0001052;1.59e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.12e-79,5;UBERON:0002410,2.12e-79,5;UBERON:0000010,1.82e-44,8;UBERON:0000059,5.54e-10,11;UBERON:0001052,1.49e-07,4;UBERON:0001016,5.66e-07,89;UBERON:0011216,6.23e-07,223 | |||
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|short_description=p6@PHOX2B | |short_description=p6@PHOX2B | ||
}} | }} |
Latest revision as of 19:56, 17 September 2015
Short description: | p6@PHOX2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PHOX2B_5end |
Coexpression cluster: | C1368_neuroblastoma_rectum_small_colon_locus_duodenum_temporal |
Association with transcript: | 82bp_to_ENST00000226382, NM_003924, uc003gwf.3_5end |
EntrezGene: | PHOX2B |
HGNC: | 9143 |
UniProt: | Q99453 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 9.99e-10 | 41 |
neurectodermal cell | 5.78e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.12e-79 | 5 |
autonomic nervous system | 2.12e-79 | 5 |
peripheral nervous system | 1.82e-44 | 8 |
large intestine | 5.54e-10 | 11 |
rectum | 1.49e-07 | 4 |
nervous system | 5.66e-07 | 89 |
organ system subdivision | 6.23e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.62e-66 | 6 |
neuroectodermal tumor | 4.30e-40 | 10 |
germ cell and embryonal cancer | 1.45e-18 | 22 |
germ cell cancer | 1.45e-18 | 22 |
lung small cell carcinoma | 1.80e-07 | 4 |