FFCP PHASE1:Hg19::chr16:20338822..20338840,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2813 | |EntrezGene=2813 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4441 | |HGNC=4441 | ||
|TSSclassifier=strong | |||
|UniProt=P55259,Q8N1A3 | |UniProt=P55259,Q8N1A3 | ||
|association_with_transcript=0bp_to_ENST00000341642,ENST00000381360,NM_001007240,NM_001007241,NM_001007242,NM_001502,uc002dgv.2,uc002dgw.2,uc002dgx.2,uc002dgy.2_5end | |association_with_transcript=0bp_to_ENST00000341642,ENST00000381360,NM_001007240,NM_001007241,NM_001007242,NM_001502,uc002dgv.2,uc002dgw.2,uc002dgx.2,uc002dgy.2_5end | ||
|cluster_id=chr16:20338822..20338840,- | |||
|coexpression_cluster_id=C27 | |coexpression_cluster_id=C27 | ||
|description=CAGE_peak_1_at_GP2_5end | |description=CAGE_peak_1_at_GP2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000167;3.39e-09;1!CL:0000164;3.39e-09;1!CL:0000502;3.39e-09;1!CL:0000172;3.39e-09;1!CL:0000173;3.39e-09;1 | |ontology_enrichment_celltype_v019=CL:0000167;3.39e-09;1!CL:0000164;3.39e-09;1!CL:0000502;3.39e-09;1!CL:0000172;3.39e-09;1!CL:0000173;3.39e-09;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000167,3.25e-09,1;CL:0000164,3.25e-09,1;CL:0000502,3.25e-09,1;CL:0000172,3.25e-09,1;CL:0000173,3.25e-09,1;CL:0002351,3.25e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.03e-09;1!UBERON:0000358;1.12e-09;1!CL:0002351;3.39e-09;1!UBERON:0009143;4.87e-09;1!UBERON:0004874;4.87e-09;1 | |ontology_enrichment_development_v019=UBERON:0006242;1.03e-09;1!UBERON:0000358;1.12e-09;1!CL:0002351;3.39e-09;1!UBERON:0009143;4.87e-09;1!UBERON:0004874;4.87e-09;1 | ||
|ontology_enrichment_disease=DOID:114!7.07e-08!2 | |ontology_enrichment_disease=DOID:114!7.07e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:114;9.68e-17;2!DOID:178;1.99e-09;1!DOID:326;1.99e-09;1!DOID:3978;1.99e-09;1!DOID:3394;1.99e-09;1!DOID:5844;1.99e-09;1!DOID:4430;3.39e-09;1!DOID:1287;7.89e-09;4 | |ontology_enrichment_disease_v019=DOID:114;9.68e-17;2!DOID:178;1.99e-09;1!DOID:326;1.99e-09;1!DOID:3978;1.99e-09;1!DOID:3394;1.99e-09;1!DOID:5844;1.99e-09;1!DOID:4430;3.39e-09;1!DOID:1287;7.89e-09;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,8.93e-17,2;DOID:178,1.99e-09,1;DOID:326,1.99e-09,1;DOID:3978,1.99e-09,1;DOID:3394,1.99e-09,1;DOID:5844,1.99e-09,1;DOID:4430,3.25e-09,1;DOID:1287,7.58e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.15e-20!115;UBERON:0000160!3.60e-14!27;UBERON:0004921!3.19e-13!129;UBERON:0004185!3.19e-13!129;UBERON:0005409!2.62e-12!35;UBERON:0001007!8.94e-12!155;UBERON:0001555!8.94e-12!155;UBERON:0007026!8.94e-12!155;UBERON:0004119!3.41e-10!169;UBERON:0000925!3.41e-10!169;UBERON:0006595!3.41e-10!169;UBERON:0001155!1.01e-08!9;UBERON:0003127!3.85e-08!2;UBERON:0002108!1.70e-07!14;UBERON:0000059!4.53e-07!11 | |ontology_enrichment_uberon=UBERON:0007023!2.15e-20!115;UBERON:0000160!3.60e-14!27;UBERON:0004921!3.19e-13!129;UBERON:0004185!3.19e-13!129;UBERON:0005409!2.62e-12!35;UBERON:0001007!8.94e-12!155;UBERON:0001555!8.94e-12!155;UBERON:0007026!8.94e-12!155;UBERON:0004119!3.41e-10!169;UBERON:0000925!3.41e-10!169;UBERON:0006595!3.41e-10!169;UBERON:0001155!1.01e-08!9;UBERON:0003127!3.85e-08!2;UBERON:0002108!1.70e-07!14;UBERON:0000059!4.53e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0003127;2.07e-17;2!UBERON:0007029;1.32e-09;1!UBERON:0002146;3.39e-09;1!UBERON:0005623;3.39e-09;1!UBERON:0000989;4.87e-09;1!UBERON:0008811;4.87e-09;1!UBERON:0002108;1.74e-07;4!UBERON:0000160;2.97e-07;17!UBERON:0000922;6.12e-07;49 | |ontology_enrichment_uberon_v019=UBERON:0003127;2.07e-17;2!UBERON:0007029;1.32e-09;1!UBERON:0002146;3.39e-09;1!UBERON:0005623;3.39e-09;1!UBERON:0000989;4.87e-09;1!UBERON:0008811;4.87e-09;1!UBERON:0002108;1.74e-07;4!UBERON:0000160;2.97e-07;17!UBERON:0000922;6.12e-07;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,2.07e-17,2;UBERON:0007029,1.32e-09,1;UBERON:0007023,1.59e-09,114;UBERON:0002146,3.83e-09,1;UBERON:0005623,3.83e-09,1;UBERON:0000989,4.15e-09,1;UBERON:0008811,4.15e-09,1;UBERON:0006258,4.15e-09,1;UBERON:0005876,4.15e-09,1;UBERON:0004874,4.15e-09,1;UBERON:0002108,1.71e-07,4;UBERON:0000160,2.99e-07,17 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,2.16115474571226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43326034125095,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,18.7293108956006,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.59223616106011,1.22206028986725,0,0,0,0.134802265961354,0,0,0,0,0,0,1032.0508078951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16386819786103,0,0,0,0,0.316553979779393,0,0,169.268224828307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06244381610515,0,7.38812301846267,1.71690419254628,0,0,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59971.8221940051,0.261906694481422,0,0,0.0675375846183947,0,0,0,0,0,1.98484471355718,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,6.98588526369575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,26.7141046182527,0.233939463462106,0,0,0,0,0,0.617393264863557,4.5897507705831,0.470317296361523,0,2.82811856521951,0,0,12.2570160999186,0,0,0.322289439867886,0,0,0,0,0,0.458729283404541,0,0,0,0.436350690340377,1190.83941800017,0,0,0,0,0,0,0.101988829741982,0,0,0,0,2.94760543171796,0,0,16.8454845701775,0,0.0645889098360061,3.5382587148639,0,0.0636471582781649,0,0.217716747896961,0,0.942928742204225,73.4435383221006,13.6390746183865,0,0,0,0,136.091746594003,0.977931553462932,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,2.16115474571226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43326034125095,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,18.7293108956006,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,1.59223616106011,1.22206028986725,0,0,0,0.134802265961354,0,0,0,0,0,0,1032.0508078951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16386819786103,0,0,0,0,0.316553979779393,0,0,169.268224828307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06244381610515,0,7.38812301846267,1.71690419254628,0,0,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59971.8221940051,0.261906694481422,0,0,0.0675375846183947,0,0,0,0,0,1.98484471355718,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,6.98588526369575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,26.7141046182527,0.233939463462106,0,0,0,0,0,0.617393264863557,4.5897507705831,0.470317296361523,0,2.82811856521951,0,0,12.2570160999186,0,0,0.322289439867886,0,0,0,0,0,0.458729283404541,0,0,0,0.436350690340377,1190.83941800017,0,0,0,0,0,0,0.101988829741982,0,0,0,0,2.94760543171796,0,0,16.8454845701775,0,0.0645889098360061,3.5382587148639,0,0.0636471582781649,0,0.217716747896961,0,0.942928742204225,73.4435383221006,13.6390746183865,0,0,0,0,136.091746594003,0.977931553462932,0,0,0,0 | ||
|short_description=p1@GP2 | |short_description=p1@GP2 | ||
}} | }} |
Latest revision as of 01:51, 25 September 2015
Short description: | p1@GP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GP2_5end |
Coexpression cluster: | C27_pancreas_temporal_duodenum_salivary_ductus_umbilical_lung |
Association with transcript: | 0bp_to_ENST00000341642, ENST00000381360, NM_001007240, NM_001007241, NM_001007242, NM_001502, uc002dgv.2, uc002dgw.2, uc002dgx.2, uc002dgy.2_5end |
EntrezGene: | GP2 |
HGNC: | 4441 |
UniProt: | P55259Q8N1A3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 3.25e-09 | 1 |
enteroendocrine cell | 3.25e-09 | 1 |
type D enteroendocrine cell | 3.25e-09 | 1 |
somatostatin secreting cell | 3.25e-09 | 1 |
pancreatic D cell | 3.25e-09 | 1 |
progenitor cell of endocrine pancreas | 3.25e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 2.07e-17 | 2 |
surface | 1.32e-09 | 1 |
adult organism | 1.59e-09 | 114 |
pulmonary valve | 3.83e-09 | 1 |
semi-lunar valve | 3.83e-09 | 1 |
penis | 4.15e-09 | 1 |
intromittent organ | 4.15e-09 | 1 |
lateral plate mesenchyme | 4.15e-09 | 1 |
undifferentiated genital tubercle | 4.15e-09 | 1 |
somatopleure | 4.15e-09 | 1 |
small intestine | 1.71e-07 | 4 |
intestine | 2.99e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
heart disease | 8.93e-17 | 2 |
vascular disease | 1.99e-09 | 1 |
ischemia | 1.99e-09 | 1 |
extrinsic cardiomyopathy | 1.99e-09 | 1 |
myocardial ischemia | 1.99e-09 | 1 |
myocardial infarction | 1.99e-09 | 1 |
somatostatinoma | 3.25e-09 | 1 |
cardiovascular system disease | 7.58e-09 | 4 |