FFCP PHASE1:Hg19::chr1:154540028..154540037,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1141 | |EntrezGene=1141 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1962 | |HGNC=1962 | ||
|TSSclassifier=strong | |||
|UniProt=P17787,Q5SXY3 | |UniProt=P17787,Q5SXY3 | ||
|association_with_transcript=-219bp_to_ENST00000368476,NM_000748,uc001ffg.2_5end | |association_with_transcript=-219bp_to_ENST00000368476,NM_000748,uc001ffg.2_5end | ||
|cluster_id=chr1:154540028..154540037,+ | |||
|coexpression_cluster_id=C73 | |coexpression_cluster_id=C73 | ||
|description=CAGE_peak_4_at_CHRNB2_5end | |description=CAGE_peak_4_at_CHRNB2_5end | ||
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|ontology_enrichment_celltype=CL:0000167!3.76e-13!1;CL:0000164!3.76e-13!1;CL:0000502!3.76e-13!1;CL:0000172!3.76e-13!1;CL:0000173!3.76e-13!1;CL:0002351!3.76e-13!1;CL:0002253!3.48e-07!2 | |ontology_enrichment_celltype=CL:0000167!3.76e-13!1;CL:0000164!3.76e-13!1;CL:0000502!3.76e-13!1;CL:0000172!3.76e-13!1;CL:0000173!3.76e-13!1;CL:0002351!3.76e-13!1;CL:0002253!3.48e-07!2 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4430!3.76e-13!1 | |ontology_enrichment_disease=DOID:4430!3.76e-13!1 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p4@CHRNB2 | |short_description=p4@CHRNB2 | ||
}} | }} |
Latest revision as of 09:36, 17 September 2015
Short description: | p4@CHRNB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CHRNB2_5end |
Coexpression cluster: | C73_pineal_eye_retina_caudate_cerebellum_left_parietal |
Association with transcript: | -219bp_to_ENST00000368476, NM_000748, uc001ffg.2_5end |
EntrezGene: | CHRNB2 |
HGNC: | 1962 |
UniProt: | P17787Q5SXY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 3.29e-195 | 2 |
regional part of epithalamus | 3.29e-195 | 2 |
secretory circumventricular organ | 3.29e-195 | 2 |
circumventricular organ | 3.29e-195 | 2 |
epithalamus | 3.29e-195 | 2 |
gland of diencephalon | 1.55e-98 | 4 |
neuroendocrine gland | 1.55e-98 | 4 |
regional part of diencephalon | 1.55e-98 | 4 |
diencephalon | 4.76e-57 | 7 |
future diencephalon | 4.76e-57 | 7 |
endocrine gland | 1.42e-12 | 35 |
regional part of forebrain | 1.07e-10 | 41 |
forebrain | 1.07e-10 | 41 |
anterior neural tube | 1.07e-10 | 41 |
future forebrain | 1.07e-10 | 41 |
endocrine system | 4.55e-10 | 45 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
gland | 5.66e-08 | 59 |
pre-chordal neural plate | 1.20e-07 | 61 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |