FFCP PHASE1:Hg19::chr10:3954241..3954256,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:3954241..3954256,+ | |||
|coexpression_cluster_id=C3015 | |coexpression_cluster_id=C3015 | ||
|description=CAGE_peak_at_chr10:3954241..3954256,+ | |description=CAGE_peak_at_chr10:3954241..3954256,+ | ||
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|ontology_enrichment_celltype=CL:0000622!2.25e-12!5;CL:0000244!7.02e-12!4;CL:0000731!7.02e-12!4;CL:0002076!2.36e-10!43;CL:0000154!3.04e-10!6;CL:0000150!2.93e-09!9;CL:0002541!4.82e-09!3;CL:0002159!4.97e-09!13;CL:0002368!1.29e-08!13;CL:0000362!3.81e-08!8;CL:0002623!7.93e-08!3;CL:0000223!1.24e-07!59;CL:0000240!5.58e-07!6;CL:0000311!5.58e-07!6;CL:0000079!5.58e-07!6;CL:0000237!5.58e-07!6;CL:0000036!5.58e-07!6;CL:0000357!5.58e-07!6;CL:0000114!5.58e-07!6 | |ontology_enrichment_celltype=CL:0000622!2.25e-12!5;CL:0000244!7.02e-12!4;CL:0000731!7.02e-12!4;CL:0002076!2.36e-10!43;CL:0000154!3.04e-10!6;CL:0000150!2.93e-09!9;CL:0002541!4.82e-09!3;CL:0002159!4.97e-09!13;CL:0002368!1.29e-08!13;CL:0000362!3.81e-08!8;CL:0002623!7.93e-08!3;CL:0000223!1.24e-07!59;CL:0000240!5.58e-07!6;CL:0000311!5.58e-07!6;CL:0000079!5.58e-07!6;CL:0000237!5.58e-07!6;CL:0000036!5.58e-07!6;CL:0000357!5.58e-07!6;CL:0000114!5.58e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000244;1.70e-39;4!CL:0000731;1.70e-39;4!CL:0002541;4.48e-29;3!CL:0002159;6.87e-11;14!CL:0000362;6.08e-10;9!CL:0000312;1.72e-08;5!CL:0000240;3.25e-07;6!CL:0000311;3.25e-07;6!CL:0000079;3.25e-07;6!CL:0000237;3.25e-07;6!CL:0002368;4.19e-07;13 | |ontology_enrichment_celltype_v019=CL:0000244;1.70e-39;4!CL:0000731;1.70e-39;4!CL:0002541;4.48e-29;3!CL:0002159;6.87e-11;14!CL:0000362;6.08e-10;9!CL:0000312;1.72e-08;5!CL:0000240;3.25e-07;6!CL:0000311;3.25e-07;6!CL:0000079;3.25e-07;6!CL:0000237;3.25e-07;6!CL:0002368;4.19e-07;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000244,1.54e-39,4;CL:0000731,1.54e-39,4;CL:0002541,4.71e-29,3;CL:0002159,7.05e-11,14;CL:0000362,5.89e-10,9;CL:0000312,1.60e-08,5;CL:0000240,3.05e-07,6;CL:0000311,3.05e-07,6;CL:0000079,3.05e-07,6;CL:0000237,3.05e-07,6;CL:0000036,3.05e-07,6;CL:0000357,3.05e-07,6;CL:0000114,3.05e-07,6;CL:0002368,3.98e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000357;3.25e-07;6!CL:0000114;3.25e-07;6 | |ontology_enrichment_development_v019=CL:0000357;3.25e-07;6!CL:0000114;3.25e-07;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;5.57e-11;1!DOID:10165;5.57e-11;1!DOID:1798;5.57e-11;1 | |ontology_enrichment_disease_v019=DOID:1799;5.57e-11;1!DOID:10165;5.57e-11;1!DOID:1798;5.57e-11;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1799,6.14e-11,1;DOID:10165,6.14e-11,1;DOID:1798,6.14e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.34e-13!115;UBERON:0001044!5.08e-10!6;UBERON:0003293!5.08e-10!6;UBERON:0003294!5.08e-10!6;UBERON:0010047!5.08e-10!6;UBERON:0000167!5.08e-10!6;UBERON:0000365!1.80e-09!5;UBERON:0000476!4.82e-09!3;UBERON:0000920!4.82e-09!3;UBERON:0001896!1.19e-08!3;UBERON:0005290!1.19e-08!3;UBERON:0010096!1.19e-08!3;UBERON:0006947!2.58e-08!3;UBERON:0004054!2.58e-08!3;UBERON:0003408!5.62e-08!10;UBERON:0005910!7.29e-08!6;UBERON:0001004!3.18e-07!72;UBERON:0000161!3.38e-07!35 | |ontology_enrichment_uberon=UBERON:0007023!1.34e-13!115;UBERON:0001044!5.08e-10!6;UBERON:0003293!5.08e-10!6;UBERON:0003294!5.08e-10!6;UBERON:0010047!5.08e-10!6;UBERON:0000167!5.08e-10!6;UBERON:0000365!1.80e-09!5;UBERON:0000476!4.82e-09!3;UBERON:0000920!4.82e-09!3;UBERON:0001896!1.19e-08!3;UBERON:0005290!1.19e-08!3;UBERON:0010096!1.19e-08!3;UBERON:0006947!2.58e-08!3;UBERON:0004054!2.58e-08!3;UBERON:0003408!5.62e-08!10;UBERON:0005910!7.29e-08!6;UBERON:0001004!3.18e-07!72;UBERON:0000161!3.38e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.12e-31;5!UBERON:0003124;4.48e-29;3!UBERON:0000920;4.48e-29;3!UBERON:0005910;1.87e-26;6!UBERON:0001896;9.29e-14;3!UBERON:0005290;9.29e-14;3!UBERON:0000486;2.33e-13;12!UBERON:0005631;3.86e-09;10!UBERON:0000158;3.86e-09;10!UBERON:0002298;2.57e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0000365;1.12e-31;5!UBERON:0003124;4.48e-29;3!UBERON:0000920;4.48e-29;3!UBERON:0005910;1.87e-26;6!UBERON:0001896;9.29e-14;3!UBERON:0005290;9.29e-14;3!UBERON:0000486;2.33e-13;12!UBERON:0005631;3.86e-09;10!UBERON:0000158;3.86e-09;10!UBERON:0002298;2.57e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.04e-31,5;UBERON:0000920,4.71e-29,3;UBERON:0005910,1.75e-26,6;UBERON:0001896,9.00e-14,3;UBERON:0005290,9.00e-14,3;UBERON:0010096,9.00e-14,3;UBERON:0003124,8.09e-13,7;UBERON:0002298,2.53e-07,6 | |||
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| ||
|short_description=p@chr10:3954241..3954256,+ | |short_description=p@chr10:3954241..3954256,+ | ||
}} | }} |
Latest revision as of 13:39, 23 July 2015
Short description: | p@chr10:3954241..3954256, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:3954241..3954256, + |
Coexpression cluster: | C3015_Urothelial_chorionic_medulla_choriocarcinoma_Small_pancreatic_heart |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 1.54e-39 | 4 |
urothelial cell | 1.54e-39 | 4 |
chorionic membrane mesenchymal stem cell | 4.71e-29 | 3 |
general ecto-epithelial cell | 7.05e-11 | 14 |
epidermal cell | 5.89e-10 | 9 |
keratinocyte | 1.60e-08 | 5 |
stratified squamous epithelial cell | 3.05e-07 | 6 |
keratin accumulating cell | 3.05e-07 | 6 |
stratified epithelial cell | 3.05e-07 | 6 |
keratinizing barrier epithelial cell | 3.05e-07 | 6 |
epithelial fate stem cell | 3.05e-07 | 6 |
stratified epithelial stem cell | 3.05e-07 | 6 |
surface ectodermal cell | 3.05e-07 | 6 |
respiratory epithelial cell | 3.98e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.04e-31 | 5 |
egg chorion | 4.71e-29 | 3 |
transitional epithelium | 1.75e-26 | 6 |
medulla oblongata | 9.00e-14 | 3 |
myelencephalon | 9.00e-14 | 3 |
future myelencephalon | 9.00e-14 | 3 |
chorion | 8.09e-13 | 7 |
brainstem | 2.53e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 6.14e-11 | 1 |
endocrine pancreas cancer | 6.14e-11 | 1 |
pancreatic endocrine carcinoma | 6.14e-11 | 1 |