FFCP PHASE1:Hg19::chr4:16077753..16077760,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8842 | |EntrezGene=8842 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9454 | |HGNC=9454 | ||
|TSSclassifier=strong | |||
|UniProt=O43490 | |UniProt=O43490 | ||
|association_with_transcript=-12bp_to_ENST00000447510,ENST00000539194,ENST00000540805,NM_001145849,NM_001145850,NM_001145851,NM_001145852,NM_006017,uc003goo.2,uc003gor.2,uc003gos.2,uc003got.2,uc003gou.2,uc010iec.1_5end | |association_with_transcript=-12bp_to_ENST00000447510,ENST00000539194,ENST00000540805,NM_001145849,NM_001145850,NM_001145851,NM_001145852,NM_006017,uc003goo.2,uc003gor.2,uc003gos.2,uc003got.2,uc003gou.2,uc010iec.1_5end | ||
|cluster_id=chr4:16077753..16077760,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_22_at_PROM1_5end | |description=CAGE_peak_22_at_PROM1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002563!7.41e-19!4;CL:0000039!5.88e-11!7;CL:0000586!5.88e-11!7 | |ontology_enrichment_celltype=CL:0002563!7.41e-19!4;CL:0000039!5.88e-11!7;CL:0000586!5.88e-11!7 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;5.96e-34;3 | |ontology_enrichment_development_v019=UBERON:0003056;5.96e-34;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001242!7.41e-19!4;UBERON:0001262!7.41e-19!4;UBERON:0004786!7.41e-19!4;UBERON:0004808!7.41e-19!4;UBERON:0001277!7.41e-19!4;UBERON:0003350!3.32e-15!5;UBERON:0001831!9.44e-10!1;UBERON:0001567!9.44e-10!1;UBERON:0008801!9.44e-10!1;UBERON:0000473!1.19e-09!8;UBERON:0001154!1.69e-09!1;UBERON:0001153!1.69e-09!1;UBERON:0007190!5.28e-09!1;UBERON:0000485!1.12e-08!9;UBERON:0004907!2.43e-07!5;UBERON:0003135!3.81e-07!11 | |ontology_enrichment_uberon=UBERON:0001242!7.41e-19!4;UBERON:0001262!7.41e-19!4;UBERON:0004786!7.41e-19!4;UBERON:0004808!7.41e-19!4;UBERON:0001277!7.41e-19!4;UBERON:0003350!3.32e-15!5;UBERON:0001831!9.44e-10!1;UBERON:0001567!9.44e-10!1;UBERON:0008801!9.44e-10!1;UBERON:0000473!1.19e-09!8;UBERON:0001154!1.69e-09!1;UBERON:0001153!1.69e-09!1;UBERON:0007190!5.28e-09!1;UBERON:0000485!1.12e-08!9;UBERON:0004907!2.43e-07!5;UBERON:0003135!3.81e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;5.15e-21;5!UBERON:0005388;5.15e-21;5!UBERON:0001802;5.15e-21;5!UBERON:0000970;5.71e-21;20!UBERON:0002104;4.86e-20;21!UBERON:0000020;2.02e-18;23!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24 | |ontology_enrichment_uberon_v019=UBERON:0000966;5.15e-21;5!UBERON:0005388;5.15e-21;5!UBERON:0001802;5.15e-21;5!UBERON:0000970;5.71e-21;20!UBERON:0002104;4.86e-20;21!UBERON:0000020;2.02e-18;23!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,4.86e-20,21;UBERON:0002104,4.86e-20,21;UBERON:0000966,9.07e-18,6;UBERON:0005388,9.07e-18,6;UBERON:0001802,9.07e-18,6;UBERON:0000020,1.03e-17,24;UBERON:0001032,1.03e-17,24;UBERON:0004456,1.03e-17,24 | |||
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|short_description=p22@PROM1 | |short_description=p22@PROM1 | ||
}} | }} |
Latest revision as of 12:45, 16 September 2015
Short description: | p22@PROM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_PROM1_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -12bp_to_ENST00000447510, ENST00000539194, ENST00000540805, NM_001145849, NM_001145850, NM_001145851, NM_001145852, NM_006017, uc003goo.2, uc003gor.2, uc003gos.2, uc003got.2, uc003gou.2, uc010iec.1_5end |
EntrezGene: | PROM1 |
HGNC: | 9454 |
UniProt: | O43490 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 4.86e-20 | 21 |
visual system | 4.86e-20 | 21 |
retina | 9.07e-18 | 6 |
photoreceptor array | 9.07e-18 | 6 |
posterior segment of eyeball | 9.07e-18 | 6 |
sense organ | 1.03e-17 | 24 |
sensory system | 1.03e-17 | 24 |
entire sense organ system | 1.03e-17 | 24 |