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Coexpression cluster:C53: Difference between revisions

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{{Coexpression_clusters
{
|full_id=C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary
 

Latest revision as of 10:19, 17 September 2013


Full id: C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary



Phase1 CAGE Peaks

Hg19::chr10:109942520..109942524,-p@chr10:109942520..109942524
-
Hg19::chr10:109942705..109942736,-p@chr10:109942705..109942736
-
Hg19::chr10:109974457..109974463,-p@chr10:109974457..109974463
-
Hg19::chr10:109986469..109986475,-p@chr10:109986469..109986475
-
Hg19::chr10:110032748..110032752,-p@chr10:110032748..110032752
-
Hg19::chr10:110145291..110145299,-p@chr10:110145291..110145299
-
Hg19::chr10:110165577..110165582,-p@chr10:110165577..110165582
-
Hg19::chr10:110305658..110305707,-p@chr10:110305658..110305707
-
Hg19::chr10:110321493..110321511,-p2@ENST00000366253
Hg19::chr10:110321523..110321537,-p3@ENST00000366253
Hg19::chr10:110321541..110321554,-p4@ENST00000366253
Hg19::chr10:110321594..110321618,-p1@ENST00000366253
Hg19::chr10:110991850..110991855,-p@chr10:110991850..110991855
-
Hg19::chr10:122787788..122787793,+p@chr10:122787788..122787793
+
Hg19::chr10:129346530..129346531,+p@chr10:129346530..129346531
+
Hg19::chr10:129346573..129346579,+p@chr10:129346573..129346579
+
Hg19::chr10:16824248..16824280,-p@chr10:16824248..16824280
-
Hg19::chr10:21068275..21068283,-p@chr10:21068275..21068283
-
Hg19::chr10:70980051..70980069,+p3@HKDC1
Hg19::chr10:76900338..76900349,+p@chr10:76900338..76900349
+
Hg19::chr10:80053535..80053546,+p1@ENST00000434440
Hg19::chr10:81794636..81794651,-p@chr10:81794636..81794651
-
Hg19::chr10:81794656..81794670,-p@chr10:81794656..81794670
-
Hg19::chr10:89347158..89347160,+p@chr10:89347158..89347160
+
Hg19::chr11:109452010..109452017,-p@chr11:109452010..109452017
-
Hg19::chr11:109452096..109452133,-p@chr11:109452096..109452133
-
Hg19::chr11:116262019..116262030,+p@chr11:116262019..116262030
+
Hg19::chr11:123213750..123213755,+p@chr11:123213750..123213755
+
Hg19::chr11:33913708..33913741,-p15@LMO2
Hg19::chr11:48056945..48056958,+p@chr11:48056945..48056958
+
Hg19::chr11:48965018..48965027,+p@chr11:48965018..48965027
+
Hg19::chr11:49005391..49005437,-p@chr11:49005391..49005437
-
Hg19::chr11:84709402..84709407,+p@chr11:84709402..84709407
+
Hg19::chr11:84738247..84738248,+p@chr11:84738247..84738248
+
Hg19::chr11:8739566..8739612,-p4@ST5
Hg19::chr12:133033703..133033713,+p1@ENST00000542627
Hg19::chr12:133039846..133039856,+p@chr12:133039846..133039856
+
Hg19::chr12:133039925..133039935,+p@chr12:133039925..133039935
+
Hg19::chr12:133039984..133039997,+p@chr12:133039984..133039997
+
Hg19::chr12:133040010..133040030,+p@chr12:133040010..133040030
+
Hg19::chr12:133040049..133040056,+p@chr12:133040049..133040056
+
Hg19::chr12:16817977..16817986,+p@chr12:16817977..16817986
+
Hg19::chr12:16938622..16938627,+p@chr12:16938622..16938627
+
Hg19::chr12:16949484..16949496,+p@chr12:16949484..16949496
+
Hg19::chr12:16949504..16949518,+p@chr12:16949504..16949518
+
Hg19::chr12:16949528..16949529,+p@chr12:16949528..16949529
+
Hg19::chr12:16949539..16949546,+p@chr12:16949539..16949546
+
Hg19::chr12:32325843..32325852,+p@chr12:32325843..32325852
+
Hg19::chr12:4433835..4433850,+p3@C12orf5
Hg19::chr12:4433856..4433869,+p4@C12orf5
Hg19::chr12:48391929..48391951,-p@chr12:48391929..48391951
-
Hg19::chr12:52595153..52595169,-p@chr12:52595153..52595169
-
Hg19::chr12:52595451..52595478,+p@chr12:52595451..52595478
+
Hg19::chr12:52741573..52741584,+p@chr12:52741573..52741584
+
Hg19::chr12:54653129..54653149,-p8@CBX5
Hg19::chr12:57882498..57882504,-p39@ARHGAP9
Hg19::chr12:63402460..63402468,+p@chr12:63402460..63402468
+
Hg19::chr12:98515149..98515152,-p@chr12:98515149..98515152
-
Hg19::chr12:98571398..98571403,-p@chr12:98571398..98571403
-
Hg19::chr12:98631062..98631067,-p@chr12:98631062..98631067
-
Hg19::chr12:98656804..98656813,-p@chr12:98656804..98656813
-
Hg19::chr12:98656849..98656859,-p@chr12:98656849..98656859
-
Hg19::chr13:35969507..35969512,+p@chr13:35969507..35969512
+
Hg19::chr13:51289337..51289344,-p@chr13:51289337..51289344
-
Hg19::chr13:70035762..70035773,+p@chr13:70035762..70035773
+
Hg19::chr13:70035786..70035788,+p@chr13:70035786..70035788
+
Hg19::chr13:71255520..71255531,-p@chr13:71255520..71255531
-
Hg19::chr13:71255538..71255552,-p@chr13:71255538..71255552
-
Hg19::chr13:71255567..71255570,-p@chr13:71255567..71255570
-
Hg19::chr13:71293127..71293133,+p@chr13:71293127..71293133
+
Hg19::chr13:71293208..71293218,+p@chr13:71293208..71293218
+
Hg19::chr13:71293232..71293241,+p@chr13:71293232..71293241
+
Hg19::chr13:71299418..71299419,+p@chr13:71299418..71299419
+
Hg19::chr13:71311740..71311771,+p@chr13:71311740..71311771
+
Hg19::chr13:71325958..71325979,+p@chr13:71325958..71325979
+
Hg19::chr13:71361271..71361273,+p@chr13:71361271..71361273
+
Hg19::chr13:71362544..71362588,+p@chr13:71362544..71362588
+
Hg19::chr13:92434714..92434724,-p@chr13:92434714..92434724
-
Hg19::chr13:92434735..92434736,-p@chr13:92434735..92434736
-
Hg19::chr13:92434746..92434758,-p@chr13:92434746..92434758
-
Hg19::chr13:92434762..92434763,-p@chr13:92434762..92434763
-
Hg19::chr14:21748227..21748255,+p@chr14:21748227..21748255
+
Hg19::chr14:21748262..21748268,+p@chr14:21748262..21748268
+
Hg19::chr14:21748277..21748286,+p@chr14:21748277..21748286
+
Hg19::chr14:29384678..29384685,-p@chr14:29384678..29384685
-
Hg19::chr14:29384708..29384713,-p@chr14:29384708..29384713
-
Hg19::chr14:29384727..29384739,-p@chr14:29384727..29384739
-
Hg19::chr14:57275164..57275176,-p@chr14:57275164..57275176
-
Hg19::chr14:57277098..57277116,-p3@OTX2
Hg19::chr14:57307162..57307165,+p@chr14:57307162..57307165
+
Hg19::chr14:82079796..82079817,-p@chr14:82079796..82079817
-
Hg19::chr14:92012888..92012895,+p@chr14:92012888..92012895
+
Hg19::chr14:97272646..97272662,+p@chr14:97272646..97272662
+
Hg19::chr15:56035616..56035638,-p3@PRTG
Hg19::chr15:69473685..69473705,+p@chr15:69473685..69473705
+
Hg19::chr16:48421151..48421159,-p@chr16:48421151..48421159
-
Hg19::chr16:81272369..81272383,+p3@BCMO1
Hg19::chr17:26232722..26232727,+p@chr17:26232722..26232727
+
Hg19::chr17:27438858..27438867,-p@chr17:27438858..27438867
-
Hg19::chr17:27438880..27438901,-p@chr17:27438880..27438901
-
Hg19::chr18:15198370..15198398,-p@chr18:15198370..15198398
-
Hg19::chr18:27042180..27042218,-p@chr18:27042180..27042218
-
Hg19::chr18:6646995..6647040,-p@chr18:6646995..6647040
-
Hg19::chr18:6647067..6647107,-p@chr18:6647067..6647107
-
Hg19::chr18:6647156..6647163,-p@chr18:6647156..6647163
-
Hg19::chr19:4334689..4334700,+p@chr19:4334689..4334700
+
Hg19::chr19:6711213..6711224,-p58@C3
Hg19::chr19:6711262..6711271,-p71@C3
Hg19::chr19:9146460..9146471,-p@chr19:9146460..9146471
-
Hg19::chr19:9176411..9176432,-p@chr19:9176411..9176432
-
Hg19::chr19:9176436..9176443,-p@chr19:9176436..9176443
-
Hg19::chr1:100111275..100111307,+p7@PALMD
Hg19::chr1:100111337..100111348,+p9@PALMD
Hg19::chr1:156779602..156779619,-p@chr1:156779602..156779619
-
Hg19::chr1:174768814..174768817,+p36@RABGAP1L
Hg19::chr1:174768823..174768834,+p20@RABGAP1L
Hg19::chr1:174768866..174768919,+p3@RABGAP1L
Hg19::chr1:200993071..200993094,+p1@ENST00000446333
p1@ENST00000458003
p1@uc001gvu.2
Hg19::chr1:204949349..204949355,+p@chr1:204949349..204949355
+
Hg19::chr1:204949396..204949409,+p@chr1:204949396..204949409
+
Hg19::chr1:238899794..238899836,-p@chr1:238899794..238899836
-
Hg19::chr1:29138600..29138609,+p4@OPRD1
Hg19::chr1:46955501..46955514,+p@chr1:46955501..46955514
+
Hg19::chr1:75240178..75240202,+p@chr1:75240178..75240202
+
Hg19::chr1:75240245..75240248,+p@chr1:75240245..75240248
+
Hg19::chr1:75240412..75240423,+p@chr1:75240412..75240423
+
Hg19::chr1:75240441..75240451,+p@chr1:75240441..75240451
+
Hg19::chr1:75240461..75240471,+p@chr1:75240461..75240471
+
Hg19::chr1:75561531..75561536,+p@chr1:75561531..75561536
+
Hg19::chr1:75561565..75561576,+p@chr1:75561565..75561576
+
Hg19::chr1:75590936..75590960,-p@chr1:75590936..75590960
-
Hg19::chr1:75598362..75598407,-p1@ENST00000427892
p1@uc001dgp.1
Hg19::chr1:75600308..75600316,+p8@LHX8
Hg19::chr1:75600318..75600329,+p4@LHX8
Hg19::chr1:75600333..75600348,+p5@LHX8
Hg19::chr1:75601936..75601941,+p@chr1:75601936..75601941
+
Hg19::chr1:75601981..75601989,+p@chr1:75601981..75601989
+
Hg19::chr1:75602005..75602017,+p@chr1:75602005..75602017
+
Hg19::chr1:75602043..75602093,+p1@LHX8
Hg19::chr1:75602749..75602758,+p@chr1:75602749..75602758
+
Hg19::chr1:75602768..75602785,+p@chr1:75602768..75602785
+
Hg19::chr1:92353713..92353718,+p@chr1:92353713..92353718
+
Hg19::chr1:97998671..97998699,-p@chr1:97998671..97998699
-
Hg19::chr1:98375249..98375279,-p@chr1:98375249..98375279
-
Hg19::chr21:17791712..17791775,+p1@LINC00478
Hg19::chr2:152566311..152566321,-p@chr2:152566311..152566321
-
Hg19::chr2:162194024..162194044,+p@chr2:162194024..162194044
+
Hg19::chr2:162194055..162194074,+p@chr2:162194055..162194074
+
Hg19::chr2:162279850..162279866,+p@chr2:162279850..162279866
+
Hg19::chr2:171939999..171940009,-p@chr2:171939999..171940009
-
Hg19::chr2:201173667..201173680,+p16@SPATS2L
Hg19::chr2:202136884..202136888,-p@chr2:202136884..202136888
-
Hg19::chr3:101026372..101026376,-p@chr3:101026372..101026376
-
Hg19::chr3:130648803..130648811,-p2@ENST00000504737
Hg19::chr3:130648830..130648873,-p1@ENST00000504737
Hg19::chr3:130648968..130648983,+p25@ATP2C1
Hg19::chr3:130649010..130649018,+p28@ATP2C1
Hg19::chr3:130650700..130650707,+p27@ATP2C1
Hg19::chr3:130650720..130650730,+p26@ATP2C1
Hg19::chr3:130650738..130650743,+p29@ATP2C1
Hg19::chr3:144554761..144554766,-p@chr3:144554761..144554766
-
Hg19::chr3:144591565..144591568,-p@chr3:144591565..144591568
-
Hg19::chr3:144772593..144772597,-p@chr3:144772593..144772597
-
Hg19::chr3:144772604..144772617,-p@chr3:144772604..144772617
-
Hg19::chr3:144772620..144772631,-p@chr3:144772620..144772631
-
Hg19::chr3:163820146..163820158,-p@chr3:163820146..163820158
-
Hg19::chr3:164059276..164059278,-p@chr3:164059276..164059278
-
Hg19::chr3:164105111..164105124,-p@chr3:164105111..164105124
-
Hg19::chr3:164321760..164321765,-p@chr3:164321760..164321765
-
Hg19::chr3:164348814..164348818,-p@chr3:164348814..164348818
-
Hg19::chr3:164348875..164348886,-p@chr3:164348875..164348886
-
Hg19::chr3:164348892..164348905,-p@chr3:164348892..164348905
-
Hg19::chr3:16475648..16475669,-p@chr3:16475648..16475669
-
Hg19::chr3:55717920..55717925,-p@chr3:55717920..55717925
-
Hg19::chr3:55717935..55717945,-p@chr3:55717935..55717945
-
Hg19::chr3:55717972..55717977,-p@chr3:55717972..55717977
-
Hg19::chr3:94874368..94874386,-p@chr3:94874368..94874386
-
Hg19::chr3:94874438..94874486,-p@chr3:94874438..94874486
-
Hg19::chr3:98672197..98672201,+p@chr3:98672197..98672201
+
Hg19::chr3:99982018..99982039,+p@chr3:99982018..99982039
+
Hg19::chr3:99986062..99986093,+p8@TBC1D23
Hg19::chr4:110071277..110071286,-p@chr4:110071277..110071286
-
Hg19::chr4:110071416..110071429,-p@chr4:110071416..110071429
-
Hg19::chr4:110071487..110071493,-p@chr4:110071487..110071493
-
Hg19::chr4:110071510..110071518,-p@chr4:110071510..110071518
-
Hg19::chr4:110106914..110106922,+p@chr4:110106914..110106922
+
Hg19::chr4:110223806..110223821,-p1@COL25A1
Hg19::chr4:110223865..110223887,-p2@COL25A1
Hg19::chr4:124087389..124087407,+p@chr4:124087389..124087407
+
Hg19::chr4:139631584..139631598,-p@chr4:139631584..139631598
-
Hg19::chr4:140478509..140478522,-p@chr4:140478509..140478522
-
Hg19::chr4:140478525..140478536,-p@chr4:140478525..140478536
-
Hg19::chr4:140478548..140478559,-p@chr4:140478548..140478559
-
Hg19::chr4:140480434..140480439,+p@chr4:140480434..140480439
+
Hg19::chr4:140496508..140496518,+p@chr4:140496508..140496518
+
Hg19::chr4:141719257..141719265,+p@chr4:141719257..141719265
+
Hg19::chr4:141719291..141719302,+p@chr4:141719291..141719302
+
Hg19::chr4:141721639..141721647,+p@chr4:141721639..141721647
+
Hg19::chr4:151468721..151468758,-p@chr4:151468721..151468758
-
Hg19::chr4:151482724..151482730,+p@chr4:151482724..151482730
+
Hg19::chr4:151503277..151503309,+p1@MAB21L2
Hg19::chr4:151503350..151503358,+p11@MAB21L2
Hg19::chr4:151503383..151503398,+p3@MAB21L2
Hg19::chr4:151503541..151503558,+p5@MAB21L2
Hg19::chr4:151505217..151505229,+p@chr4:151505217..151505229
+
Hg19::chr4:151505383..151505388,+p@chr4:151505383..151505388
+
Hg19::chr4:151505582..151505614,+p@chr4:151505582..151505614
+
Hg19::chr4:163037768..163037783,+p@chr4:163037768..163037783
+
Hg19::chr4:163037784..163037795,+p@chr4:163037784..163037795
+
Hg19::chr4:163037803..163037808,+p@chr4:163037803..163037808
+
Hg19::chr4:186810873..186810877,-p@chr4:186810873..186810877
-
Hg19::chr4:186877509..186877535,-p15@SORBS2
Hg19::chr4:186877879..186877901,-p30@SORBS2
Hg19::chr4:186885040..186885053,-p@chr4:186885040..186885053
-
Hg19::chr4:186885071..186885082,-p@chr4:186885071..186885082
-
Hg19::chr4:186885104..186885114,-p@chr4:186885104..186885114
-
Hg19::chr4:186885124..186885129,-p@chr4:186885124..186885129
-
Hg19::chr4:39344406..39344419,-p@chr4:39344406..39344419
-
Hg19::chr4:39344421..39344426,-p@chr4:39344421..39344426
-
Hg19::chr4:39344546..39344551,-p@chr4:39344546..39344551
-
Hg19::chr4:39344555..39344565,-p@chr4:39344555..39344565
-
Hg19::chr4:41646481..41646524,+p@chr4:41646481..41646524
+
Hg19::chr4:4441567..4441581,-p@chr4:4441567..4441581
-
Hg19::chr4:4441598..4441608,-p@chr4:4441598..4441608
-
Hg19::chr4:4441615..4441618,-p@chr4:4441615..4441618
-
Hg19::chr4:45402094..45402097,-p@chr4:45402094..45402097
-
Hg19::chr4:45421998..45422016,-p@chr4:45421998..45422016
-
Hg19::chr4:45468440..45468455,-p@chr4:45468440..45468455
-
Hg19::chr4:85070690..85070698,+p@chr4:85070690..85070698
+
Hg19::chr4:87605424..87605427,+p@chr4:87605424..87605427
+
Hg19::chr4:87619580..87619591,+p@chr4:87619580..87619591
+
Hg19::chr4:87619599..87619608,+p@chr4:87619599..87619608
+
Hg19::chr5:109253106..109253118,+p@chr5:109253106..109253118
+
Hg19::chr5:109375902..109375904,+p@chr5:109375902..109375904
+
Hg19::chr5:109466651..109466653,+p@chr5:109466651..109466653
+
Hg19::chr5:109568177..109568181,+p@chr5:109568177..109568181
+
Hg19::chr5:109697504..109697508,+p@chr5:109697504..109697508
+
Hg19::chr5:109741165..109741179,+p@chr5:109741165..109741179
+
Hg19::chr5:109824569..109824572,+p@chr5:109824569..109824572
+
Hg19::chr5:112538965..112538976,-p13@MCC
Hg19::chr5:112538977..112538988,-p14@MCC
Hg19::chr5:112539005..112539020,-p4@MCC
Hg19::chr5:112539038..112539056,-p10@MCC
Hg19::chr5:14292914..14292921,+p54@TRIO
Hg19::chr5:14292946..14292955,+p47@TRIO
Hg19::chr5:14297259..14297277,+p@chr5:14297259..14297277
+
Hg19::chr5:153569547..153569581,+p@chr5:153569547..153569581
+
Hg19::chr5:153673183..153673186,+p@chr5:153673183..153673186
+
Hg19::chr5:17884820..17884824,+p@chr5:17884820..17884824
+
Hg19::chr5:49737460..49737482,-p13@EMB
Hg19::chr5:77655924..77655948,+p7@SCAMP1
Hg19::chr5:77655955..77655973,+p9@SCAMP1
Hg19::chr6:135160154..135160159,-p@chr6:135160154..135160159
-
Hg19::chr6:145136887..145136900,-p@chr6:145136887..145136900
-
Hg19::chr6:145141060..145141071,+p@chr6:145141060..145141071
+
Hg19::chr6:145141096..145141099,+p@chr6:145141096..145141099
+
Hg19::chr6:49519017..49519042,+p4@C6orf141
Hg19::chr6:49519079..49519090,+p@chr6:49519079..49519090
+
Hg19::chr6:80878554..80878590,+p@chr6:80878554..80878590
+
Hg19::chr6:90410025..90410028,-p@chr6:90410025..90410028
-
Hg19::chr6:90410033..90410038,-p@chr6:90410033..90410038
-
Hg19::chr6:90410057..90410065,-p@chr6:90410057..90410065
-
Hg19::chr7:135400343..135400350,-p@chr7:135400343..135400350
-
Hg19::chr7:26468491..26468495,+p@chr7:26468491..26468495
+
Hg19::chr7:84001358..84001366,-p33@SEMA3A
Hg19::chr7:84001394..84001404,-p32@SEMA3A
Hg19::chr8:104290190..104290200,+p@chr8:104290190..104290200
+
Hg19::chr8:124692287..124692298,+p@chr8:124692287..124692298
+
Hg19::chr8:126163004..126163017,+p@chr8:126163004..126163017
+
Hg19::chr8:126163063..126163075,+p@chr8:126163063..126163075
+
Hg19::chr8:126163123..126163134,+p@chr8:126163123..126163134
+
Hg19::chr8:126163135..126163146,+p@chr8:126163135..126163146
+
Hg19::chr8:126163153..126163173,+p@chr8:126163153..126163173
+
Hg19::chr8:126241072..126241084,+p@chr8:126241072..126241084
+
Hg19::chr8:126241101..126241113,+p@chr8:126241101..126241113
+
Hg19::chr8:126241119..126241133,+p@chr8:126241119..126241133
+
Hg19::chr8:126241143..126241173,+p@chr8:126241143..126241173
+
Hg19::chr8:126241188..126241201,+p@chr8:126241188..126241201
+
Hg19::chr8:128625133..128625141,-p@chr8:128625133..128625141
-
Hg19::chr8:128625155..128625162,-p@chr8:128625155..128625162
-
Hg19::chr8:131524868..131524874,+p@chr8:131524868..131524874
+
Hg19::chr8:31064965..31064970,+p@chr8:31064965..31064970
+
Hg19::chr8:31242290..31242292,+p@chr8:31242290..31242292
+
Hg19::chr8:31242764..31242778,+p@chr8:31242764..31242778
+
Hg19::chr8:33395236..33395243,-p@chr8:33395236..33395243
-
Hg19::chr8:53658192..53658203,-p23@RB1CC1
Hg19::chr8:73449988..73450011,+p10@KCNB2
Hg19::chr8:91335060..91335067,-p@chr8:91335060..91335067
-
Hg19::chr8:97605007..97605014,+p@chr8:97605007..97605014
+
Hg19::chr8:97749773..97749779,-p@chr8:97749773..97749779
-
Hg19::chr8:99166673..99166718,+p@chr8:99166673..99166718
+
Hg19::chr9:14182976..14182982,-p@chr9:14182976..14182982
-
Hg19::chr9:14187311..14187317,-p@chr9:14187311..14187317
-
Hg19::chr9:14187420..14187422,-p@chr9:14187420..14187422
-
Hg19::chr9:14306833..14306862,-p@chr9:14306833..14306862
-
Hg19::chr9:14446927..14446952,-p@chr9:14446927..14446952
-
Hg19::chr9:14482058..14482062,-p@chr9:14482058..14482062
-
Hg19::chr9:14498760..14498766,-p@chr9:14498760..14498766
-
Hg19::chr9:14499309..14499326,-p@chr9:14499309..14499326
-
Hg19::chr9:14499375..14499380,-p@chr9:14499375..14499380
-
Hg19::chr9:14512929..14512932,-p@chr9:14512929..14512932
-
Hg19::chr9:14519630..14519632,-p@chr9:14519630..14519632
-
Hg19::chr9:14532058..14532065,-p4@ENST00000421119
Hg19::chr9:14532068..14532087,-p1@ENST00000421119
Hg19::chr9:14532104..14532109,-p5@ENST00000421119
Hg19::chr9:14532123..14532133,-p2@ENST00000421119
Hg19::chr9:14532168..14532184,-p3@ENST00000421119
Hg19::chr9:14532303..14532339,-p6@ENST00000421119
Hg19::chr9:20643867..20643874,+p@chr9:20643867..20643874
+
Hg19::chr9:20643918..20643921,+p@chr9:20643918..20643921
+
Hg19::chr9:73365891..73365896,-p@chr9:73365891..73365896
-
Hg19::chr9:73379037..73379042,-p@chr9:73379037..73379042
-
Hg19::chr9:73407669..73407681,-p@chr9:73407669..73407681
-
Hg19::chr9:73407700..73407711,-p@chr9:73407700..73407711
-
Hg19::chr9:73408030..73408040,-p@chr9:73408030..73408040
-
Hg19::chr9:73417946..73417949,-p@chr9:73417946..73417949
-
Hg19::chr9:73424904..73424908,-p1@MIR204
Hg19::chr9:73477985..73477993,-p17@TRPM3
Hg19::chr9:73483992..73484003,-p6@TRPM3
Hg19::chrX:102983417..102983428,-p1@GLRA4
Hg19::chrX:105831293..105831348,-p@chrX:105831293..105831348
-
Hg19::chrX:105855164..105855218,+p1@CXorf57
Hg19::chrX:105855232..105855255,+p2@CXorf57
Hg19::chrX:105855266..105855277,+p3@CXorf57
Hg19::chrX:106198807..106198826,-p@chrX:106198807..106198826
-
Hg19::chrX:148697692..148697697,-p@chrX:148697692..148697697
-
Hg19::chrX:32429912..32429917,-p@chrX:32429912..32429917
-
Hg19::chrX:32429921..32429933,-p@chrX:32429921..32429933
-
Hg19::chrX:32430337..32430355,-p11@DMD
Hg19::chrX:32536201..32536212,-p@chrX:32536201..32536212
-
Hg19::chrX:32536538..32536556,-p@chrX:32536538..32536556
-
Hg19::chrX:32536558..32536569,-p@chrX:32536558..32536569
-
Hg19::chrX:32536626..32536666,-p@chrX:32536626..32536666
-
Hg19::chrX:47895575..47895589,+p@chrX:47895575..47895589
+
Hg19::chrX:47895608..47895616,+p@chrX:47895608..47895616
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0009966regulation of signal transduction0.0434012568845938
GO:0032501multicellular organismal process0.0434012568845938
GO:0042706eye photoreceptor cell fate commitment0.0434012568845938
GO:0004986delta-opioid receptor activity0.0434012568845938
GO:0046552photoreceptor cell fate commitment0.0434012568845938
GO:0032468Golgi calcium ion homeostasis0.0434012568845938
GO:0032472Golgi calcium ion transport0.0434012568845938
GO:0003834beta-carotene 15,15'-monooxygenase activity0.0434012568845938
GO:0048856anatomical structure development0.0434012568845938
GO:0001798positive regulation of type IIa hypersensitivity0.0434012568845938
GO:0002894positive regulation of type II hypersensitivity0.0434012568845938
GO:0001796regulation of type IIa hypersensitivity0.0434012568845938
GO:0002886regulation of myeloid leukocyte mediated immunity0.0434012568845938
GO:0002445type II hypersensitivity0.0434012568845938
GO:0001794type IIa hypersensitivity0.0434012568845938
GO:0002888positive regulation of myeloid leukocyte mediated immunity0.0434012568845938
GO:0002892regulation of type II hypersensitivity0.0434012568845938
GO:0048731system development0.0434012568845938
GO:0007275multicellular organismal development0.0434012568845938
GO:0030695GTPase regulator activity0.0434012568845938
GO:0002712regulation of B cell mediated immunity0.0434012568845938
GO:0002863positive regulation of inflammatory response to antigenic stimulus0.0434012568845938
GO:0010369chromocenter0.0434012568845938
GO:0002885positive regulation of hypersensitivity0.0434012568845938
GO:0002866positive regulation of acute inflammatory response to antigenic stimulus0.0434012568845938
GO:0002675positive regulation of acute inflammatory response0.0434012568845938
GO:0002889regulation of immunoglobulin mediated immune response0.0434012568845938
GO:0002891positive regulation of immunoglobulin mediated immune response0.0434012568845938
GO:0002714positive regulation of B cell mediated immunity0.0434012568845938
GO:0040036regulation of fibroblast growth factor receptor signaling pathway0.0434012568845938
GO:0005096GTPase activator activity0.0482044591290754
GO:0002861regulation of inflammatory response to antigenic stimulus0.0482044591290754
GO:0002673regulation of acute inflammatory response0.0482044591290754
GO:0002864regulation of acute inflammatory response to antigenic stimulus0.0482044591290754
GO:0002883regulation of hypersensitivity0.0482044591290754
GO:0043034costamere0.0482044591290754



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br>disease_data<br>

Cell Type
Ontology termp-valuen
glial cell (sensu Vertebrata)4.22e-1315
glial cell4.22e-1315
glioblast4.22e-1315
glioblast (sensu Vertebrata)4.22e-1315
neuron associated cell6.95e-1217
neuron associated cell (sensu Vertebrata)6.95e-1217
neural cell8.32e-0925
Disease
Ontology termp-valuen
nervous system cancer6.76e-1811


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.0995394
MA0006.10.000125942
MA0007.10.069474
MA0009.10.529679
MA0014.10
MA0017.10.00376134
MA0019.10.265642
MA0024.10.00322374
MA0025.10.128184
MA0027.10.935979
MA0028.10.00278439
MA0029.11.40635
MA0030.10.277867
MA0031.10.720834
MA0038.10.839722
MA0040.12.11762
MA0041.15.39555
MA0042.14.21041
MA0043.10.0439816
MA0046.10.497194
MA0048.11.88996e-07
MA0050.10.116132
MA0051.10.294111
MA0052.10.913184
MA0055.12.52666e-05
MA0056.10
MA0057.10.00729286
MA0058.10.0906242
MA0059.10.122858
MA0060.10.00227851
MA0061.12.05214e-05
MA0063.10
MA0066.10.00321447
MA0067.10.0372649
MA0068.10.0618488
MA0069.10.0378835
MA0070.11.1738
MA0071.10.726469
MA0072.10.876271
MA0073.10
MA0074.10.0922607
MA0076.10.000413212
MA0077.10.841701
MA0078.10.0833105
MA0081.10.0611082
MA0083.10.363114
MA0084.10.661775
MA0087.11.77832
MA0088.10.000545767
MA0089.10
MA0090.10.0378371
MA0091.10.366585
MA0092.10.358976
MA0093.10.139088
MA0095.10
MA0098.10
MA0100.18.97819e-05
MA0101.10.00344962
MA0103.10.0017004
MA0105.12.80474e-06
MA0106.10.00295944
MA0107.10.00537472
MA0108.20.371892
MA0109.10
MA0111.10.00125117
MA0113.10.416682
MA0114.10.00037837
MA0115.10.0222287
MA0116.11.56537e-06
MA0117.10.0619066
MA0119.10.269663
MA0122.10.170727
MA0124.11.28623
MA0125.11.63666
MA0130.10
MA0131.10.00114349
MA0132.10
MA0133.10
MA0135.11.86729
MA0136.10.00935755
MA0139.17.10227e-14
MA0140.11.88473
MA0141.10.160667
MA0142.10.973404
MA0143.10.70755
MA0144.10.0391109
MA0145.13.9938e-09
MA0146.10
MA0147.10.00755685
MA0148.10.889337
MA0149.111.4215
MA0062.21.1864e-10
MA0035.21.21699
MA0039.20
MA0138.20.00307354
MA0002.20.000318474
MA0137.20.00364997
MA0104.20.000211047
MA0047.20.870809
MA0112.24.19386e-13
MA0065.20.00244767
MA0150.10.0060857
MA0151.10
MA0152.11.0944
MA0153.11.53953
MA0154.12.25761e-07
MA0155.16.41863e-07
MA0156.17.50887e-05
MA0157.10.334679
MA0158.10
MA0159.10.000204685
MA0160.10.133312
MA0161.10
MA0162.10
MA0163.10
MA0164.10.968934
MA0080.20.00300102
MA0018.20.00829226
MA0099.20.200967
MA0079.20
MA0102.20.1134
MA0258.12.1101e-06
MA0259.10.00689781
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
SUZ12#23512162.393589536050770.001336317833465940.00886907080638978



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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