FFCP PHASE1:Hg19::chr9:12698444..12698487,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7306 | |EntrezGene=7306 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12450 | |HGNC=12450 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-18bp_to_ENST00000381142_5end | |association_with_transcript=-18bp_to_ENST00000381142_5end | ||
|cluster_id=chr9:12698444..12698487,+ | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_8_at_TYRP1_5end | |description=CAGE_peak_8_at_TYRP1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!1.02e-14!14;CL:0000077!2.14e-14!19;CL:0000148!1.32e-13!10;CL:0000541!1.32e-13!10;CL:0002567!1.52e-09!3;CL:0000174!1.24e-08!3 | |ontology_enrichment_celltype=CL:0000147!1.02e-14!14;CL:0000077!2.14e-14!19;CL:0000148!1.32e-13!10;CL:0000541!1.32e-13!10;CL:0002567!1.52e-09!3;CL:0000174!1.24e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.68e-45;10!CL:0000147;4.33e-32;14!CL:0002567;9.79e-29;3!CL:0000710;2.87e-22;20!CL:0000075;2.58e-16;27!CL:0002077;2.09e-11;34!CL:0002566;1.19e-10;1!CL:0002568;1.50e-10;1!CL:0002174;3.45e-10;1!CL:0000501;3.45e-10;1!CL:0000077;8.61e-08;19 | |ontology_enrichment_celltype_v019=CL:0000148;3.68e-45;10!CL:0000147;4.33e-32;14!CL:0002567;9.79e-29;3!CL:0000710;2.87e-22;20!CL:0000075;2.58e-16;27!CL:0002077;2.09e-11;34!CL:0002566;1.19e-10;1!CL:0002568;1.50e-10;1!CL:0002174;3.45e-10;1!CL:0000501;3.45e-10;1!CL:0000077;8.61e-08;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.68e-45,10;CL:0000541,3.68e-45,10;CL:0000147,4.33e-32,14;CL:0002567,9.79e-29,3;CL:0000710,2.87e-22,20;CL:0000075,2.58e-16,27;CL:0002077,8.35e-13,34;CL:0002566,1.19e-10,1;CL:0002568,1.57e-10,1;CL:0002174,4.33e-10,1;CL:0000501,4.33e-10,1;CL:0000333,5.76e-10,41;CL:0000077,8.30e-08,19;CL:0000133,8.53e-07,59 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1909!8.26e-07!2 | |ontology_enrichment_disease=DOID:1909!8.26e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.07e-19;2!DOID:3371;3.45e-10;1!DOID:4549;3.45e-10;1!DOID:5861;3.45e-10;1!DOID:6496;3.45e-10;1!DOID:5662;3.45e-10;1 | |ontology_enrichment_disease_v019=DOID:1909;2.07e-19;2!DOID:3371;3.45e-10;1!DOID:4549;3.45e-10;1!DOID:5861;3.45e-10;1!DOID:6496;3.45e-10;1!DOID:5662;3.45e-10;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.97e-19,2;DOID:3371,3.29e-10,1;DOID:4549,3.29e-10,1;DOID:5861,3.29e-10,1;DOID:6496,3.29e-10,1;DOID:5662,4.75e-10,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p8@TYRP1 | |short_description=p8@TYRP1 | ||
}} | }} |
Latest revision as of 23:46, 24 September 2015
Short description: | p8@TYRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TYRP1_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -18bp_to_ENST00000381142_5end |
EntrezGene: | TYRP1 |
HGNC: | 12450 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.68e-45 | 10 |
melanoblast | 3.68e-45 | 10 |
pigment cell | 4.33e-32 | 14 |
light melanocyte | 9.79e-29 | 3 |
neurecto-epithelial cell | 2.87e-22 | 20 |
columnar/cuboidal epithelial cell | 2.58e-16 | 27 |
ecto-epithelial cell | 8.35e-13 | 34 |
dark melanocyte | 1.19e-10 | 1 |
mesenchymal stem cell of Wharton's jelly | 1.57e-10 | 1 |
follicular cell of ovary | 4.33e-10 | 1 |
granulosa cell | 4.33e-10 | 1 |
migratory neural crest cell | 5.76e-10 | 41 |
mesothelial cell | 8.30e-08 | 19 |
neurectodermal cell | 8.53e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.97e-19 | 2 |
chondrosarcoma | 3.29e-10 | 1 |
extraosseous chondrosarcoma | 3.29e-10 | 1 |
myxoid chondrosarcoma | 3.29e-10 | 1 |
extraskeletal myxoid chondrosarcoma | 3.29e-10 | 1 |
pleomorphic carcinoma | 4.75e-10 | 1 |