FFCP PHASE1:Hg19::chr1:89664595..89664636,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:89664595..89664636,-
|short_description=p1@GBP4
|description=CAGE_peak_1_at_GBP4_5end
|association_with_transcript=0bp_to_ENST00000355754,NM_052941,uc001dn...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=115361 | |EntrezGene=115361 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20480 | |HGNC=20480 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PP9 | |UniProt=Q96PP9 | ||
|association_with_transcript=0bp_to_ENST00000355754,NM_052941,uc001dnb.2_5end | |||
|cluster_id=chr1:89664595..89664636,- | |||
|coexpression_cluster_id=C451 | |||
|description=CAGE_peak_1_at_GBP4_5end | |||
|id=chr1:89664595..89664636,- | |||
|ontology_enrichment_celltype=CL:0002087!3.45e-31!119;CL:0000738!6.70e-30!140;CL:0000037!9.82e-29!172;CL:0000566!9.82e-29!172;CL:0002031!1.20e-27!124;CL:0002032!2.03e-27!165;CL:0000837!2.03e-27!165;CL:0000988!1.77e-25!182;CL:0002057!1.09e-22!42;CL:0000860!2.11e-20!45;CL:0000766!5.62e-20!76;CL:0002194!6.07e-19!63;CL:0000576!6.07e-19!63;CL:0000040!6.07e-19!63;CL:0000559!6.07e-19!63;CL:0002009!3.60e-18!65;CL:0000839!1.25e-16!70;CL:0000557!1.85e-16!71;CL:0000763!4.44e-16!112;CL:0000049!4.44e-16!112;CL:0000838!1.31e-11!52;CL:0000542!6.08e-11!53;CL:0000051!6.08e-11!53;CL:0000791!1.15e-10!18;CL:0000789!1.15e-10!18;CL:0002420!1.15e-10!18;CL:0002419!1.15e-10!18;CL:0000790!1.15e-10!18;CL:0000625!4.05e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.21e-18;33!CL:0002057;7.21e-18;33!CL:0000576;2.54e-16;48!CL:0000473;3.47e-15;39!CL:0000234;3.47e-15;39!CL:0002087;4.92e-12;104!CL:0000791;1.14e-11;18!CL:0000789;1.14e-11;18!CL:0002419;1.14e-11;18!CL:0000766;1.45e-11;69!CL:0000625;8.08e-09;11!CL:0000763;7.31e-08;100!CL:0000084;9.23e-08;25!CL:0000738;9.67e-08;136!CL:0000542;1.80e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,2.85e-36,115;CL:0000738,5.74e-33,136;CL:0000037,5.36e-31,168;CL:0002031,2.74e-30,120;CL:0002032,2.09e-29,161;CL:0000837,2.09e-29,161;CL:0000988,5.56e-27,177;CL:0000473,4.77e-25,48;CL:0000234,4.77e-25,48;CL:0000860,5.60e-25,42;CL:0002057,5.60e-25,42;CL:0000766,3.02e-23,72;CL:0002194,5.17e-23,59;CL:0000576,5.17e-23,59;CL:0000040,5.17e-23,59;CL:0000559,5.17e-23,59;CL:0002009,2.29e-21,61;CL:0000839,5.56e-19,66;CL:0000557,1.29e-18,67;CL:0000763,5.53e-17,108;CL:0000049,5.53e-17,108;CL:0000838,1.69e-12,52;CL:0000542,6.50e-12,53;CL:0000051,6.50e-12,53;CL:0000791,1.19e-11,18;CL:0000789,1.19e-11,18;CL:0002420,1.19e-11,18;CL:0002419,1.19e-11,18;CL:0000790,1.19e-11,18;CL:0000625,7.90e-09,11;CL:0000084,9.74e-08,25;CL:0000827,9.74e-08,25;CL:0002393,9.76e-07,9;CL:0002397,9.76e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.48e-18;42!CL:0000790;1.14e-11;18!CL:0000051;1.80e-07;53!CL:0000049;8.48e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!9.18e-22!112;UBERON:0002390!1.95e-20!102;UBERON:0003061!1.95e-20!102;UBERON:0007023!5.65e-19!115;UBERON:0002405!3.05e-15!115;UBERON:0002371!3.43e-13!80;UBERON:0003081!1.23e-12!216;UBERON:0001474!2.55e-10!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,4.98e-24,108;UBERON:0002390,2.86e-22,98;UBERON:0003061,2.86e-22,98;UBERON:0007023,8.32e-20,114;UBERON:0002405,7.70e-19,93;UBERON:0002371,7.67e-15,76;UBERON:0003081,9.92e-13,203;UBERON:0001474,5.49e-12,82;UBERON:0004765,5.78e-09,90;UBERON:0001434,8.27e-07,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70627602516243,2.41077811209591,0.730310090387373,2.43966399395253,0.246242116153576,0,0,0.85870796139317,0.547497700291537,0.502170558379211,10.927117021957,12.8897925436415,12.1214603223066,28.3222279331211,26.8680578668049,13.7786349751308,0,0.30120591877825,0,0.154934401160603,0.284338464974843,39.0488584315347,19.3898392986157,21.6588003267753,25.6072827444705,14.778421299835,15.546895968911,14.6818073551486,15.4122133106339,14.7371618038636,15.5253799160202,15.8051745095866,13.9797081927421,16.7241440283356,143.270811376431,110.661425220571,133.612459887051,32.0613483085055,16.7826017731795,28.4395621848118,19.9536879915161,10.3704337021981,17.5284317867166,40.0969899005882,21.5022448140983,35.1635419189473,164.265947492985,125.462640644006,141.080392426322,75.4544020434318,37.4474248296152,40.4834461847124,90.9520168229411,69.3572281498868,103.381890079636,91.4153248976387,46.4029821344332,68.6723380746719,38.8709726813973,45.7099244924844,34.1743592178653,15.9506656228023,14.5671586056261,22.6623077242883,39.9017841237748,42.7670855978044,42.5607478271597,24.6394742245852,27.8530691743687,26.6852776159066,17.0692089026603,23.6233632351247,35.634651277178,21.8144808019005,29.5756663905963,19.9224539188307,36.4087057409982,17.5845684937605,64.7639510037227,43.7196679125598,18.7002700190305,39.3419540227666,20.8295704257057,25.2889843769396,38.1185209490746,20.8590250645498,25.0927337039409,25.3274746930285,43.3386677283325,27.9875612101095,31.9008808200414,46.8490684313477,31.6385559722418,42.6594659996401,45.3848616706146,33.4383521520877,47.8175091462837,40.4822317432425,39.8635833853672,35.5420780936921,28.7805730451818,33.7234034369691,62.8838225233213,76.1589272978703,48.7405083915868,42.9715079545236,47.5226022224187,42.3116084608542,51.4506176840762,71.2105141348371,51.3806636935517,50.9099358091049,34.4747530914292,28.6161009488353,28.820056372677,2.43806866313962,29.51083782696,7.28816602508123,0.722878304769133,0,0.289693037921647,0,1.45990461090791,1.51255707462509,0,0.702678285545008,20.6292043908897,0.364295288292542,0,0.324547393654683,1.0447784237956,1.19662164466979,1.66943437013739,3.43196946468077,1.11437250398869,1.19257444420023,0,0.347140501607594,1.13061588384802,4.19499436209906,0.825354125820202,0.626984899610432,11.8871709217891,16.3652480835887,8.36801531911676,3.62546385398232,2.28081631715554,3.66093086322254,1.83831540172934,0.81014194788176,11.8768638617826,8.98117490504679,8.1080265947992,0,0.949265659568129,0.732806975721629,11.8602375692457,19.3890132074163,0,0,5.44511200157693,0.132409180813219,0.860509862246441,1.06400514659507,1.12135520028461,6.4049397437823,0.24666754841716,6.22422070799533,8.75619368452972,10.9519475086017,0.454072282934794,0.576175924479999,0,0,0,0,0,0,0,0,0,0.103325781175765,7.12801714369232,0.989067717114227,0,0,0.168336113954066,0,0,0.438977620880838,0,1.95309476578576,17.9222849392833,0.89694817844431,0,0.211931901159562,0.300091096084402,0.824420233907511,1.54584324027377,0.558350568994769,0.168776332241266,0.194874010322397,1.7670364197088,0.276149695926898,6.95078044320891,0.355009592516614,0.503760491138201,1.01736355386293,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0.929551542956147,0,0.504641701751257,0,7.8224766164908,6.43240938192885,0,0,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0,0,14.763109092493,0,1.2347220339942,2.94017422771084,10.1404027857465,6.87979051674338,22.4500164538934,0,0,1.71567810298526,0,0,0,0,0,0,1.44331342025273,0.695582429850461,0.939269553886573,17.7570730746121,12.5006088395685,15.2203321787679,0,0,8.61759521305891,1.63802985597466,3.12125440806329,0,0,0,0,0,0,2.95597942737566,0.616339038092582,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,1.14330573052231,0,0.87192013766656,0,1.29271715757778,0,0,19.6794206272804,20.8014873822732,0,0,0,2.28764789853036,0,0,1.30294473717494,2.13235169245527,0,5.12446941001296,0.871533458600294,4.39881161201051,7.29742683847143,7.03159928004977,10.5416969741516,0,0,0,0,0,0,4.03506518376698,39.0120905199816,28.2472123065968,39.9146842830017,0,2.60279707715243,0,0.502548796003046,0,29.9602809578873,14.9580729602012,19.8919446449297,0.12269149171914,0,0,5.61521326133179,2.67643483195743,1.73472656537328,1.40569697991256,0,0,0,0,0,0.0868836144680828,0,0,29.7745957616958,27.3957035039643,35.3268216329401,0,0,0,0,0,0,0,1.02341449813341,0.160853921143607,1.48418066444991,0.154209693802656,0,0.410635780069046,0.519254429183621,0.232420756919918,0,0,0.0920809889358963,3.09999010044438,0,0.524497659837696,0,0.0770153371044148,0,0,0.527758144464379,6.8240030442538,6.97384191633714,8.42072072798343,6.16909010761157,0,0.501689773854853,0.254876273045038,0,0.223874754722178,0.877039506583738,1.8300481571743,0.256450125116389,2.95213181129735,0,21.7416534576694,0,0.165018999841176,0,0,1.6068392984416,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0.255679882248303,0.178064071293475,0,0,0,0.10115778085555,0,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| ||
|short_description=p1@GBP4 | |||
}} | }} |
Latest revision as of 16:46, 19 September 2015
Short description: | p1@GBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GBP4_5end |
Coexpression cluster: | C451_CD14_CD4_Eosinophils_Neutrophils_adult_Natural_CD8 |
Association with transcript: | 0bp_to_ENST00000355754, NM_052941, uc001dnb.2_5end |
EntrezGene: | GBP4 |
HGNC: | 20480 |
UniProt: | Q96PP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 4.98e-24 | 108 |
hematopoietic system | 2.86e-22 | 98 |
blood island | 2.86e-22 | 98 |
adult organism | 8.32e-20 | 114 |
immune system | 7.70e-19 | 93 |
bone marrow | 7.67e-15 | 76 |
lateral plate mesoderm | 9.92e-13 | 203 |
bone element | 5.49e-12 | 82 |
skeletal element | 5.78e-09 | 90 |
skeletal system | 8.27e-07 | 100 |