FFCP PHASE1:Hg19::chr4:48485413..48485423,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=201780 | |EntrezGene=201780 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22980 | |HGNC=22980 | ||
|TSSclassifier=strong | |||
|UniProt=Q96EP9 | |UniProt=Q96EP9 | ||
|association_with_transcript=53bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | |association_with_transcript=53bp_to_ENST00000273861,NM_152679,uc003gyc.2_5end | ||
|cluster_id=chr4:48485413..48485423,+ | |||
|coexpression_cluster_id=C135 | |coexpression_cluster_id=C135 | ||
|description=CAGE_peak_5_at_SLC10A4_5end | |description=CAGE_peak_5_at_SLC10A4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002605!6.59e-12!3 | |ontology_enrichment_celltype=CL:0002605!6.59e-12!3 | ||
|ontology_enrichment_celltype_v019=CL:0000333;9.08e-24;5!CL:0000047;1.54e-15;2!CL:0002321;1.31e-08;15 | |ontology_enrichment_celltype_v019=CL:0000333;9.08e-24;5!CL:0000047;1.54e-15;2!CL:0002321;1.31e-08;15 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.09e-10;3!UBERON:0003057;1.09e-10;3 | |ontology_enrichment_development_v019=UBERON:0006241;1.09e-10;3!UBERON:0003057;1.09e-10;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:169;5.35e-20;6!DOID:171;2.00e-12;10 | |ontology_enrichment_disease_v019=DOID:169;5.35e-20;6!DOID:171;2.00e-12;10 | ||
|ontology_enrichment_disease_v019_2=DOID:169,4.86e-20,6;DOID:171,1.89e-12,10 | |||
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| ||
|short_description=p5@SLC10A4 | |short_description=p5@SLC10A4 | ||
}} | }} |
Latest revision as of 22:47, 17 September 2015
Short description: | p5@SLC10A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC10A4_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 53bp_to_ENST00000273861, NM_152679, uc003gyc.2_5end |
EntrezGene: | SLC10A4 |
HGNC: | 22980 |
UniProt: | Q96EP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.09e-24 | 5 |
autonomic nervous system | 8.09e-24 | 5 |
locus ceruleus | 2.74e-15 | 2 |
brainstem nucleus | 2.74e-15 | 2 |
hindbrain nucleus | 2.74e-15 | 2 |
peripheral nervous system | 1.02e-13 | 8 |
nervous system | 2.56e-11 | 89 |
spinal cord | 9.90e-11 | 3 |
dorsal region element | 9.90e-11 | 3 |
dorsum | 9.90e-11 | 3 |
pons | 1.20e-10 | 3 |
posterior neural tube | 1.78e-08 | 15 |
chordal neural plate | 1.78e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 4.86e-20 | 6 |
neuroectodermal tumor | 1.89e-12 | 10 |