FFCP PHASE1:Hg19::chr12:20522763..20522783,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5139 | |EntrezGene=5139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8778 | |HGNC=8778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-275bp_to_ENST00000542675_5end | |association_with_transcript=-275bp_to_ENST00000542675_5end | ||
|cluster_id=chr12:20522763..20522783,+ | |||
|coexpression_cluster_id=C1012 | |coexpression_cluster_id=C1012 | ||
|description=CAGE_peak_5_at_PDE3A_5end | |description=CAGE_peak_5_at_PDE3A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000097;8.29e-15;5!CL:0000163;4.59e-08;9!CL:0002195;4.51e-07;2!CL:0002571;4.51e-07;2 | |ontology_enrichment_celltype_v019=CL:0000097;8.29e-15;5!CL:0000163;4.59e-08;9!CL:0002195;4.51e-07;2!CL:0002571;4.51e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000097,4.70e-15,5;CL:0002028,4.70e-15,5;CL:0000163,3.40e-08,9;CL:0002195,4.45e-07,2;CL:0002571,4.45e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.73e-14;29!UBERON:0005062;9.69e-08;4!UBERON:0007284;9.69e-08;4 | |ontology_enrichment_development_v019=UBERON:0008947;1.73e-14;29!UBERON:0005062;9.69e-08;4!UBERON:0007284;9.69e-08;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:114;9.00e-08;2 | |ontology_enrichment_disease_v019=DOID:114;9.00e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:114,8.88e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-16!115;UBERON:0000468!2.62e-10!659;UBERON:0001737!3.52e-10!9;UBERON:0000477!2.96e-09!286;UBERON:0000467!8.54e-09!625;UBERON:0000922!1.04e-08!612;UBERON:0000480!1.07e-08!626;UBERON:0000481!2.19e-08!347;UBERON:0002050!4.57e-08!605;UBERON:0005423!4.57e-08!605;UBERON:0007100!5.07e-08!27;UBERON:0000923!9.40e-08!604;UBERON:0005291!9.40e-08!604;UBERON:0006598!9.40e-08!604;UBERON:0002532!9.40e-08!604 | |ontology_enrichment_uberon=UBERON:0007023!1.32e-16!115;UBERON:0000468!2.62e-10!659;UBERON:0001737!3.52e-10!9;UBERON:0000477!2.96e-09!286;UBERON:0000467!8.54e-09!625;UBERON:0000922!1.04e-08!612;UBERON:0000480!1.07e-08!626;UBERON:0000481!2.19e-08!347;UBERON:0002050!4.57e-08!605;UBERON:0005423!4.57e-08!605;UBERON:0007100!5.07e-08!27;UBERON:0000923!9.40e-08!604;UBERON:0005291!9.40e-08!604;UBERON:0006598!9.40e-08!604;UBERON:0002532!9.40e-08!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.17e-26;9!UBERON:0001557;9.17e-26;9!UBERON:0007100;5.83e-13;25!UBERON:0004151;2.14e-10;3!UBERON:0003978;3.29e-10;3!UBERON:0000946;3.29e-10;3!UBERON:0000072;1.21e-09;37!UBERON:0000160;6.95e-09;17!UBERON:0000948;1.09e-07;22!UBERON:0000065;1.89e-07;44!UBERON:0002081;2.49e-07;2!UBERON:0002133;2.91e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0001737;9.17e-26;9!UBERON:0001557;9.17e-26;9!UBERON:0007100;5.83e-13;25!UBERON:0004151;2.14e-10;3!UBERON:0003978;3.29e-10;3!UBERON:0000946;3.29e-10;3!UBERON:0000072;1.21e-09;37!UBERON:0000160;6.95e-09;17!UBERON:0000948;1.09e-07;22!UBERON:0000065;1.89e-07;44!UBERON:0002081;2.49e-07;2!UBERON:0002133;2.91e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.28e-26,9;UBERON:0007100,9.27e-12,27;UBERON:0001557,2.38e-11,19;UBERON:0008947,1.91e-10,38;UBERON:0003258,1.91e-10,38;UBERON:0004151,2.58e-10,3;UBERON:0003978,3.73e-10,3;UBERON:0009751,3.73e-10,3;UBERON:0000946,3.73e-10,3;UBERON:0002523,3.73e-10,3;UBERON:0005983,3.73e-10,3;UBERON:0002165,3.73e-10,3;UBERON:0002062,3.73e-10,3;UBERON:0007280,3.73e-10,3;UBERON:0004921,5.04e-10,118;UBERON:0000160,7.82e-09,17;UBERON:0000072,6.96e-08,47;UBERON:0002081,3.00e-07,2;UBERON:0010227,3.00e-07,2;UBERON:0002133,3.39e-07,2;UBERON:0001007,4.78e-07,145;UBERON:0001555,4.78e-07,145;UBERON:0007026,4.78e-07,145;UBERON:0000948,6.92e-07,24;UBERON:0005498,6.92e-07,24;UBERON:0004140,6.92e-07,24;UBERON:0009881,6.92e-07,24;UBERON:0004141,6.92e-07,24;UBERON:0003084,6.92e-07,24;UBERON:0007005,6.92e-07,24;UBERON:0004139,6.92e-07,24;UBERON:0004291,6.92e-07,24 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,1.09220686065086,0.263766978228454,0.37129905888014,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,1.50401373190767,0.144846518960824,0,0,0.0945348171640679,0,0.175669571386252,0.458426764241994,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0.419499436209906,0.550236083880135,0.208994966536811,0,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0.22452937262617,0.337834441449967,1.53316637465883,0,1.09921046358244,0,0,0,0.993943903390637,0.379891534993739,0,0,0,0,1.06748995729705,0,0,0.404132016209064,0.163461903113459,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0,0,0,0.438977620880838,0,0.600952235626387,0.226864366320042,0,0,0,0,0,0.515281080091258,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0,2.83936320095625,2.02301628093722,2.89213235860178,3.52940712743661,2.61455332910887,4.27087114399974,2.83145747136345,2.74710051175484,3.46272441251751,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,3.94130590316755,3.60998579454227,1.86595303986695,2.16179930125442,2.90357596880674,0,0,0,0,0,0,0,0.784917590417525,0,0.36669142910475,0,0,0,0.26593811658487,0,0,0,0.532844358032199,2.7165818795048,0,0,0,3.19852753868291,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,3.32870879020994,0.907170879989041,0.496215615637554,0.460385919864187,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.290012154876366,0.308097234229289,0.767518373630648,0.137836572484531,0.214840489736547,0,0.426133137080504,0.178064071293475,0,0,0,0,0,0,0,0.924100740528266,0,0,0.74129687641568,2.00374841438788,0,0,1.14378116354295,0,0,0,0,0,0,0.235624804691373,0,1.58510321173008,0,0,1.46228093778771,0,0.136499911407986,0,0,0,1.32687795048244,1.75380354101505,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0.670302275535787,0,0.376575203107117,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,1.59398390600856,0.552567831062295,0,0,0,0.622079175323615,0,9.48812225780729,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0.885741385813839,0,0,0,0,0,6.10055395706345,0,0.692552326534174,0.113942055847001,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0,1.08194319871046,4.97630965539252,1.23840590304675,2.4441205797345,0.296521128680622,0.123563938946503,0.104421949505455,0.067401132980677,2.40773294189637,0.234264445725339,0,0,0,0.394584402849391,2.41981432097328,0.30607276163049,0.63186579628488,0,0.103688191397247,0,0,0,0,0,0,0.694238953340524,0,0,0.34945333648406,0.171986032471617,4.83781656445426,7.74746761113567,5.17327379435218,0.872901148395775,0,0.451961481561065,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0.343189995723929,2.0167671718341,0,0,0,0,0,0,0,0,0,0,0,7.81990723562312,6.41649187232714,2.15361907373044,9.98395002494956,25.7535628881942,8.25734392534928,4.0981918216903,0,0,0,0,0,0.492137407573744,0.169346664131569,0,0,0,0.412618309791701,0,0,0,0.0607495566580247,0,0.315222829196793,1.20645552710496,0,2.68931008999267,0,10.7204298956005,12.5797474369432,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0,1.88195521672762,0,0.320362237703084,0.628817220398664,0,0,0,0,0,1.08803560673895,0,0,0,0,0,0.122026264901963,0.250381861413,1.14681839138014,0,0.248385611765534,0,0,0,1.42732666772484,0,0,0,0,0,0,0,0,0.889811221596536,0.228840068396924,0,0.310874401165561,0.887130899937803,0.159296767163702,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2288645437686,0,0,0,0,0,0,0,0,0,0.215649622793364,0.157265941855896,0.109209638192014,0,0,0,0,0.954013051960256,0,0,0.352675943690684,0,0.128458450192919,0,0.159633859057151,0,0.252071696221718,0.0691572524642179,0.645902582527404,0,0,0,0,0,0,0,0,0.526472298444801,0,1.56302802246618,0,0.327543835020193,0,0.135075169236789,0,0,0,0,4.93431990171464,5.45832296228224,0.527613733078862,0,0,0,0.606965604236632,0.91064876540519,0.887023701626388,0,0,0.0679697329768317,0.131545547125698,0,0.111231401892069,0.313972371402056,0.314231179832004,0,2.73947616152849,0,0,1.57248397188644,0,0,0,0,0,0,0,0.860454717640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| ||
|short_description=p5@PDE3A | |short_description=p5@PDE3A | ||
}} | }} |
Latest revision as of 18:45, 17 September 2015
Short description: | p5@PDE3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PDE3A_5end |
Coexpression cluster: | C1012_heart_left_bile_Mast_epitheloid_aorta_umbilical |
Association with transcript: | -275bp_to_ENST00000542675_5end |
EntrezGene: | PDE3A |
HGNC: | 8778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 4.70e-15 | 5 |
basophil mast progenitor cell | 4.70e-15 | 5 |
endocrine cell | 3.40e-08 | 9 |
hepatic stem cell | 4.45e-07 | 2 |
hepatic mesenchymal stem cell | 4.45e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.28e-26 | 9 |
primary circulatory organ | 9.27e-12 | 27 |
upper respiratory tract | 2.38e-11 | 19 |
respiratory primordium | 1.91e-10 | 38 |
endoderm of foregut | 1.91e-10 | 38 |
cardiac chamber | 2.58e-10 | 3 |
valve | 3.73e-10 | 3 |
cardiac mesenchyme | 3.73e-10 | 3 |
cardial valve | 3.73e-10 | 3 |
tunica intima | 3.73e-10 | 3 |
heart layer | 3.73e-10 | 3 |
endocardium | 3.73e-10 | 3 |
endocardial cushion | 3.73e-10 | 3 |
presumptive endocardium | 3.73e-10 | 3 |
subdivision of digestive tract | 5.04e-10 | 118 |
intestine | 7.82e-09 | 17 |
segment of respiratory tract | 6.96e-08 | 47 |
cardiac atrium | 3.00e-07 | 2 |
future cardiac atrium | 3.00e-07 | 2 |
atrioventricular valve | 3.39e-07 | 2 |
digestive system | 4.78e-07 | 145 |
digestive tract | 4.78e-07 | 145 |
primitive gut | 4.78e-07 | 145 |
heart | 6.92e-07 | 24 |
primitive heart tube | 6.92e-07 | 24 |
primary heart field | 6.92e-07 | 24 |
anterior lateral plate mesoderm | 6.92e-07 | 24 |
heart tube | 6.92e-07 | 24 |
heart primordium | 6.92e-07 | 24 |
cardiac mesoderm | 6.92e-07 | 24 |
cardiogenic plate | 6.92e-07 | 24 |
heart rudiment | 6.92e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
heart disease | 8.88e-08 | 2 |