FFCP PHASE1:Hg19::chr4:93225050..93225057,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2895 | |EntrezGene=2895 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4576 | |HGNC=4576 | ||
|TSSclassifier=strong | |||
|UniProt=O43424 | |UniProt=O43424 | ||
|association_with_transcript=-492bp_to_ENST00000282020,NM_001510,uc010ikx.2,uc011cdt.1,uc011cdu.1_5end | |association_with_transcript=-492bp_to_ENST00000282020,NM_001510,uc010ikx.2,uc011cdt.1,uc011cdu.1_5end | ||
|cluster_id=chr4:93225050..93225057,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_11_at_GRID2_5end | |description=CAGE_peak_11_at_GRID2_5end | ||
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|ontology_enrichment_celltype=CL:0000540!1.91e-12!6;CL:0000031!1.91e-12!6;CL:0000404!1.91e-12!6;CL:0000047!1.85e-09!8 | |ontology_enrichment_celltype=CL:0000540!1.91e-12!6;CL:0000031!1.91e-12!6;CL:0000404!1.91e-12!6;CL:0000047!1.85e-09!8 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.79e-195;3 | |ontology_enrichment_development_v019=UBERON:0006215;2.79e-195;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.09e-35!57;UBERON:0005068!4.09e-35!57;UBERON:0006241!4.09e-35!57;UBERON:0007135!4.09e-35!57;UBERON:0002616!7.65e-34!59;UBERON:0001017!3.75e-33!82;UBERON:0005743!1.73e-31!86;UBERON:0000073!3.06e-28!94;UBERON:0001016!3.06e-28!94;UBERON:0000955!3.98e-28!69;UBERON:0006238!3.98e-28!69;UBERON:0001893!1.89e-24!34;UBERON:0004733!5.15e-23!12;UBERON:0002028!5.15e-23!12;UBERON:0007277!5.15e-23!12;UBERON:0003075!2.19e-22!86;UBERON:0007284!2.19e-22!86;UBERON:0001869!1.90e-21!32;UBERON:0002346!2.89e-21!90;UBERON:0004732!3.26e-21!13;UBERON:0002791!7.56e-21!33;UBERON:0002780!4.51e-20!41;UBERON:0001890!4.51e-20!41;UBERON:0006240!4.51e-20!41;UBERON:0003080!1.46e-19!42;UBERON:0007023!2.18e-18!115;UBERON:0003076!2.51e-18!15;UBERON:0003057!2.51e-18!15;UBERON:0000369!7.87e-18!4;UBERON:0002435!7.87e-18!4;UBERON:0000204!7.87e-18!4;UBERON:0010082!7.87e-18!4;UBERON:0000033!1.18e-16!123;UBERON:0002020!2.49e-16!34;UBERON:0003528!2.49e-16!34;UBERON:0000153!9.70e-16!129;UBERON:0007811!9.70e-16!129;UBERON:0002680!1.74e-14!9;UBERON:0001895!1.74e-14!9;UBERON:0010092!1.74e-14!9;UBERON:0004121!2.28e-14!169;UBERON:0000924!5.85e-14!173;UBERON:0006601!5.85e-14!173;UBERON:0003056!5.28e-13!61;UBERON:0002037!9.10e-13!6;UBERON:0006215!9.10e-13!6;UBERON:0002619!1.60e-11!22;UBERON:0005383!2.38e-11!3;UBERON:0005382!2.38e-11!3;UBERON:0001896!6.32e-11!3;UBERON:0005290!6.32e-11!3;UBERON:0010096!6.32e-11!3;UBERON:0009663!1.99e-10!7;UBERON:0000956!3.89e-10!25;UBERON:0000203!3.89e-10!25;UBERON:0000025!1.79e-09!194;UBERON:0001874!2.40e-09!1;UBERON:0003112!2.82e-09!1;UBERON:0000032!2.82e-09!1;UBERON:0005253!2.82e-09!1;UBERON:0003128!2.82e-09!1;UBERON:0002241!2.82e-09!1;UBERON:0001703!2.82e-09!1;UBERON:0004761!2.82e-09!1;UBERON:0009617!2.82e-09!1;UBERON:0002298!4.46e-09!8;UBERON:0002336!4.54e-09!1;UBERON:0001018!4.54e-09!1;UBERON:0002473!4.54e-09!1;UBERON:0005340!4.54e-09!1;UBERON:0002316!4.54e-09!1;UBERON:0003544!4.54e-09!1;UBERON:0001020!4.54e-09!1;UBERON:0005970!4.54e-09!1;UBERON:0002437!4.54e-09!1;UBERON:0001950!6.53e-09!20;UBERON:0007190!8.49e-09!1;UBERON:0001882!9.17e-09!1;UBERON:0005403!9.17e-09!1;UBERON:0002022!1.07e-08!1;UBERON:0002308!3.21e-08!9;UBERON:0002420!3.21e-08!9;UBERON:0000125!3.21e-08!9;UBERON:0007245!3.21e-08!9;UBERON:0010009!3.21e-08!9;UBERON:0010011!3.21e-08!9;UBERON:0000454!3.21e-08!9;UBERON:0000349!4.56e-07!5;UBERON:0004111!5.48e-07!241;UBERON:0000064!5.79e-07!219 | |ontology_enrichment_uberon=UBERON:0001049!4.09e-35!57;UBERON:0005068!4.09e-35!57;UBERON:0006241!4.09e-35!57;UBERON:0007135!4.09e-35!57;UBERON:0002616!7.65e-34!59;UBERON:0001017!3.75e-33!82;UBERON:0005743!1.73e-31!86;UBERON:0000073!3.06e-28!94;UBERON:0001016!3.06e-28!94;UBERON:0000955!3.98e-28!69;UBERON:0006238!3.98e-28!69;UBERON:0001893!1.89e-24!34;UBERON:0004733!5.15e-23!12;UBERON:0002028!5.15e-23!12;UBERON:0007277!5.15e-23!12;UBERON:0003075!2.19e-22!86;UBERON:0007284!2.19e-22!86;UBERON:0001869!1.90e-21!32;UBERON:0002346!2.89e-21!90;UBERON:0004732!3.26e-21!13;UBERON:0002791!7.56e-21!33;UBERON:0002780!4.51e-20!41;UBERON:0001890!4.51e-20!41;UBERON:0006240!4.51e-20!41;UBERON:0003080!1.46e-19!42;UBERON:0007023!2.18e-18!115;UBERON:0003076!2.51e-18!15;UBERON:0003057!2.51e-18!15;UBERON:0000369!7.87e-18!4;UBERON:0002435!7.87e-18!4;UBERON:0000204!7.87e-18!4;UBERON:0010082!7.87e-18!4;UBERON:0000033!1.18e-16!123;UBERON:0002020!2.49e-16!34;UBERON:0003528!2.49e-16!34;UBERON:0000153!9.70e-16!129;UBERON:0007811!9.70e-16!129;UBERON:0002680!1.74e-14!9;UBERON:0001895!1.74e-14!9;UBERON:0010092!1.74e-14!9;UBERON:0004121!2.28e-14!169;UBERON:0000924!5.85e-14!173;UBERON:0006601!5.85e-14!173;UBERON:0003056!5.28e-13!61;UBERON:0002037!9.10e-13!6;UBERON:0006215!9.10e-13!6;UBERON:0002619!1.60e-11!22;UBERON:0005383!2.38e-11!3;UBERON:0005382!2.38e-11!3;UBERON:0001896!6.32e-11!3;UBERON:0005290!6.32e-11!3;UBERON:0010096!6.32e-11!3;UBERON:0009663!1.99e-10!7;UBERON:0000956!3.89e-10!25;UBERON:0000203!3.89e-10!25;UBERON:0000025!1.79e-09!194;UBERON:0001874!2.40e-09!1;UBERON:0003112!2.82e-09!1;UBERON:0000032!2.82e-09!1;UBERON:0005253!2.82e-09!1;UBERON:0003128!2.82e-09!1;UBERON:0002241!2.82e-09!1;UBERON:0001703!2.82e-09!1;UBERON:0004761!2.82e-09!1;UBERON:0009617!2.82e-09!1;UBERON:0002298!4.46e-09!8;UBERON:0002336!4.54e-09!1;UBERON:0001018!4.54e-09!1;UBERON:0002473!4.54e-09!1;UBERON:0005340!4.54e-09!1;UBERON:0002316!4.54e-09!1;UBERON:0003544!4.54e-09!1;UBERON:0001020!4.54e-09!1;UBERON:0005970!4.54e-09!1;UBERON:0002437!4.54e-09!1;UBERON:0001950!6.53e-09!20;UBERON:0007190!8.49e-09!1;UBERON:0001882!9.17e-09!1;UBERON:0005403!9.17e-09!1;UBERON:0002022!1.07e-08!1;UBERON:0002308!3.21e-08!9;UBERON:0002420!3.21e-08!9;UBERON:0000125!3.21e-08!9;UBERON:0007245!3.21e-08!9;UBERON:0010009!3.21e-08!9;UBERON:0010011!3.21e-08!9;UBERON:0000454!3.21e-08!9;UBERON:0000349!4.56e-07!5;UBERON:0004111!5.48e-07!241;UBERON:0000064!5.79e-07!219 | ||
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|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.83e-98,6;UBERON:0006215,1.83e-98,6;UBERON:0002680,3.75e-66,9;UBERON:0001895,3.75e-66,9;UBERON:0010092,3.75e-66,9;UBERON:0004733,5.59e-50,12;UBERON:0002028,5.59e-50,12;UBERON:0007277,5.59e-50,12;UBERON:0004732,3.04e-46,13;UBERON:0003076,2.90e-40,15;UBERON:0003057,2.90e-40,15;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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|short_description=p11@GRID2 | |short_description=p11@GRID2 | ||
}} | }} |
Latest revision as of 09:24, 19 September 2015
Short description: | p11@GRID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_GRID2_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -492bp_to_ENST00000282020, NM_001510, uc010ikx.2, uc011cdt.1, uc011cdu.1_5end |
EntrezGene: | GRID2 |
HGNC: | 4576 |
UniProt: | O43424 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.83e-98 | 6 |
rhombic lip | 1.83e-98 | 6 |
regional part of metencephalon | 3.75e-66 | 9 |
metencephalon | 3.75e-66 | 9 |
future metencephalon | 3.75e-66 | 9 |
segmental subdivision of hindbrain | 5.59e-50 | 12 |
hindbrain | 5.59e-50 | 12 |
presumptive hindbrain | 5.59e-50 | 12 |
segmental subdivision of nervous system | 3.04e-46 | 13 |
posterior neural tube | 2.90e-40 | 15 |
chordal neural plate | 2.90e-40 | 15 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |