FFCP PHASE1:Hg19::chr14:52026212..52026215,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr14:52026212..52026215,+ | |||
|coexpression_cluster_id=C195 | |coexpression_cluster_id=C195 | ||
|description=CAGE_peak_at_chr14:52026212..52026215,+ | |description=CAGE_peak_at_chr14:52026212..52026215,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002076!5.51e-08!43 | |ontology_enrichment_celltype=CL:0002076!5.51e-08!43 | ||
|ontology_enrichment_celltype_v019=CL:0002621;2.03e-16;3!CL:0002076;2.74e-10;42!CL:0002251;1.33e-09;20!CL:0000047;4.17e-07;2 | |ontology_enrichment_celltype_v019=CL:0002621;2.03e-16;3!CL:0002076;2.74e-10;42!CL:0002251;1.33e-09;20!CL:0000047;4.17e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.88e-16,3;CL:0002076,1.04e-09,42;CL:0002251,1.23e-09,20;CL:0000223,6.37e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!1.71e-11!14 | |ontology_enrichment_disease=DOID:1749!1.71e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.01e-13;14!DOID:3151;2.46e-13;1!DOID:3149;2.46e-13;1!DOID:3111;6.05e-13;1!DOID:3603;6.05e-13;1!DOID:3451;2.66e-07;2!DOID:4159;2.66e-07;2!DOID:0060122;2.66e-07;2 | |ontology_enrichment_disease_v019=DOID:1749;1.01e-13;14!DOID:3151;2.46e-13;1!DOID:3149;2.46e-13;1!DOID:3111;6.05e-13;1!DOID:3603;6.05e-13;1!DOID:3451;2.66e-07;2!DOID:4159;2.66e-07;2!DOID:0060122;2.66e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,8.26e-14,14;DOID:3151,2.95e-13,1;DOID:3149,2.95e-13,1;DOID:3111,6.82e-13,1;DOID:3603,6.82e-13,1;DOID:3451,2.91e-07,2;DOID:4159,2.91e-07,2;DOID:0060122,2.91e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000166!6.23e-07!21 | |ontology_enrichment_uberon=UBERON:0000166!6.23e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000974;3.62e-18;6!UBERON:0001949;2.03e-16;3!UBERON:0003729;1.21e-14;13!UBERON:0000344;1.59e-14;20!UBERON:0003343;9.46e-13;4!UBERON:0004785;9.46e-13;4!UBERON:0000161;4.25e-10;19!UBERON:0000166;4.25e-10;19!UBERON:0003929;1.47e-07;7!UBERON:0000341;4.17e-07;2!UBERON:0000165;6.52e-07;28 | |ontology_enrichment_uberon_v019=UBERON:0000974;3.62e-18;6!UBERON:0001949;2.03e-16;3!UBERON:0003729;1.21e-14;13!UBERON:0000344;1.59e-14;20!UBERON:0003343;9.46e-13;4!UBERON:0004785;9.46e-13;4!UBERON:0000161;4.25e-10;19!UBERON:0000166;4.25e-10;19!UBERON:0003929;1.47e-07;7!UBERON:0000341;4.17e-07;2!UBERON:0000165;6.52e-07;28 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.88e-16,3;UBERON:0003729,1.07e-14,13;UBERON:0000344,1.48e-14,20;UBERON:0003343,8.17e-13,4;UBERON:0004785,8.17e-13,4;UBERON:0000974,3.15e-11,10;UBERON:0000166,8.84e-09,22;UBERON:0000161,5.00e-08,36;UBERON:0000341,3.48e-07,2;UBERON:0003350,9.94e-07,8;UBERON:0001828,9.94e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0.425208599930087,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.662045904066094,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0,0,0,0,0,1.90922284413584,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0,0.179117045405697,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0.308419387605311,0,0.0821271560138091,0,0,0,0,1.01289087829486,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0.576570202095319,19.2695195866822,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539210106883961,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0.139423744278603,0.230850775511391,0,0.23056390438806,0,0,0,0.549585560411174,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.0979923974143777,0.522355239482415,0,0,0,0,0,0.290967049465258,0,0,0.411125773940253,0,0,0,0.160317640503067,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,2.0126081255956,0,0,0,0,1.53532157855556,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.74988244777264,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.37266523244462,0,0.219284049578707,0,0.38582807654183,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,1.26787274015176,0,0,0,0,0,1.258915569475,0,0,0,0.157265941855896,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37406805901436,0,2.75142897782519,0.115525666150338,0,0,0,0,2.62216589314576,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0.207216164163037,0,0.691259661814092,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,2.11736923029415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,0,0,0,0.112131862580613,0,0,0.653150243690884,0,0.0673520530145875,0,0,0.0814032686109745,0.213454691755431,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0.425208599930087,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.662045904066094,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0,0,0,0,0,1.90922284413584,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0,0.179117045405697,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0,0,0,0,0.308419387605311,0,0.0821271560138091,0,0,0,0,1.01289087829486,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0.576570202095319,19.2695195866822,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.539210106883961,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0.139423744278603,0.230850775511391,0,0.23056390438806,0,0,0,0.549585560411174,0.533034776018635,0,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.0979923974143777,0.522355239482415,0,0,0,0,0,0.290967049465258,0,0,0.411125773940253,0,0,0,0.160317640503067,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,2.0126081255956,0,0,0,0,1.53532157855556,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0.74988244777264,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.37266523244462,0,0.219284049578707,0,0.38582807654183,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,1.26787274015176,0,0,0,0,0,1.258915569475,0,0,0,0.157265941855896,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37406805901436,0,2.75142897782519,0.115525666150338,0,0,0,0,2.62216589314576,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0.158013611732727,0,0,0,0.207216164163037,0,0.691259661814092,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,2.11736923029415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,0,0,0,0.112131862580613,0,0,0.653150243690884,0,0.0673520530145875,0,0,0.0814032686109745,0.213454691755431,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr14:52026212..52026215,+ | |short_description=p@chr14:52026212..52026215,+ | ||
}} | }} |
Latest revision as of 21:00, 24 July 2015
Short description: | p@chr14:52026212..52026215, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr14:52026212..52026215, + |
Coexpression cluster: | C195_Small_Gingival_Bronchial_Smooth_mesenchymal_Urothelial_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.88e-16 | 3 |
endo-epithelial cell | 1.04e-09 | 42 |
epithelial cell of alimentary canal | 1.23e-09 | 20 |
endodermal cell | 6.37e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.88e-16 | 3 |
mouth mucosa | 1.07e-14 | 13 |
mucosa | 1.48e-14 | 20 |
mucosa of oral region | 8.17e-13 | 4 |
respiratory system mucosa | 8.17e-13 | 4 |
neck | 3.15e-11 | 10 |
oral opening | 8.84e-09 | 22 |
orifice | 5.00e-08 | 36 |
throat | 3.48e-07 | 2 |
epithelium of mucosa | 9.94e-07 | 8 |
gingiva | 9.94e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 8.26e-14 | 14 |
skin squamous cell carcinoma | 2.95e-13 | 1 |
keratoacanthoma | 2.95e-13 | 1 |
cystadenocarcinoma | 6.82e-13 | 1 |
mucinous cystadenocarcinoma | 6.82e-13 | 1 |
skin carcinoma | 2.91e-07 | 2 |
skin cancer | 2.91e-07 | 2 |
integumentary system cancer | 2.91e-07 | 2 |