FFCP PHASE1:Hg19::chr17:41174367..41174418,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10493 | |EntrezGene=10493 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16919 | |HGNC=16919 | ||
|TSSclassifier=strong | |||
|UniProt=E9PF80,B3KUF8 | |UniProt=E9PF80,B3KUF8 | ||
|association_with_transcript=0bp_to_ENST00000315674,ENST00000542468,uc010whk.1_5end | |association_with_transcript=0bp_to_ENST00000315674,ENST00000542468,uc010whk.1_5end | ||
|cluster_id=chr17:41174367..41174418,- | |||
|coexpression_cluster_id=C1436 | |coexpression_cluster_id=C1436 | ||
|description=CAGE_peak_1_at_VAT1_5end | |description=CAGE_peak_1_at_VAT1_5end | ||
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|ontology_enrichment_celltype=CL:0000222!3.59e-32!119;CL:0002321!3.71e-30!248;CL:0000220!1.11e-29!246;CL:0000055!8.89e-28!180;CL:0000144!2.97e-19!625;CL:0000213!2.75e-17!57;CL:0000215!2.75e-17!57;CL:0000183!7.82e-17!59;CL:0000548!1.13e-16!679;CL:0000004!1.13e-16!679;CL:0000255!1.13e-16!679;CL:0000115!3.71e-16!35;CL:0000012!4.29e-16!682;CL:0002078!1.14e-15!44;CL:0002371!2.65e-15!591;CL:0000680!3.13e-15!57;CL:0000056!3.13e-15!57;CL:0000355!3.13e-15!57;CL:0000187!1.74e-14!54;CL:0000192!3.44e-14!42;CL:0000514!3.44e-14!42;CL:0000393!3.75e-13!60;CL:0000211!3.75e-13!60;CL:0000066!1.06e-11!254;CL:0000057!1.88e-11!75;CL:0000359!3.93e-11!32;CL:0002139!5.93e-11!24;CL:0000071!6.12e-09!18;CL:0002546!6.12e-09!18;CL:0000325!1.29e-07!39;CL:0000147!4.24e-07!14 | |ontology_enrichment_celltype=CL:0000222!3.59e-32!119;CL:0002321!3.71e-30!248;CL:0000220!1.11e-29!246;CL:0000055!8.89e-28!180;CL:0000144!2.97e-19!625;CL:0000213!2.75e-17!57;CL:0000215!2.75e-17!57;CL:0000183!7.82e-17!59;CL:0000548!1.13e-16!679;CL:0000004!1.13e-16!679;CL:0000255!1.13e-16!679;CL:0000115!3.71e-16!35;CL:0000012!4.29e-16!682;CL:0002078!1.14e-15!44;CL:0002371!2.65e-15!591;CL:0000680!3.13e-15!57;CL:0000056!3.13e-15!57;CL:0000355!3.13e-15!57;CL:0000187!1.74e-14!54;CL:0000192!3.44e-14!42;CL:0000514!3.44e-14!42;CL:0000393!3.75e-13!60;CL:0000211!3.75e-13!60;CL:0000066!1.06e-11!254;CL:0000057!1.88e-11!75;CL:0000359!3.93e-11!32;CL:0002139!5.93e-11!24;CL:0000071!6.12e-09!18;CL:0002546!6.12e-09!18;CL:0000325!1.29e-07!39;CL:0000147!4.24e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000115;3.31e-14;36!CL:0002078;2.19e-11;45!CL:0002139;6.00e-11;24!CL:0000359;1.21e-10;32!CL:0000192;2.31e-10;43!CL:0000213;5.54e-10;58!CL:0000215;5.54e-10;58!CL:0000071;6.20e-09;18!CL:0000187;5.04e-08;55!CL:0000147;4.28e-07;14!CL:0000393;6.47e-07;61!CL:0000211;6.47e-07;61!CL:0000134;6.96e-07;55 | |ontology_enrichment_celltype_v019=CL:0000115;3.31e-14;36!CL:0002078;2.19e-11;45!CL:0002139;6.00e-11;24!CL:0000359;1.21e-10;32!CL:0000192;2.31e-10;43!CL:0000213;5.54e-10;58!CL:0000215;5.54e-10;58!CL:0000071;6.20e-09;18!CL:0000187;5.04e-08;55!CL:0000147;4.28e-07;14!CL:0000393;6.47e-07;61!CL:0000211;6.47e-07;61!CL:0000134;6.96e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,6.09e-33,121;CL:0002321,6.72e-31,250;CL:0000213,6.80e-18,58;CL:0000215,6.80e-18,58;CL:0000115,8.32e-17,36;CL:0002078,2.74e-16,45;CL:0000680,2.52e-15,58;CL:0000056,2.52e-15,58;CL:0000355,2.52e-15,58;CL:0000187,1.40e-14,55;CL:0000192,2.93e-14,43;CL:0000514,2.93e-14,43;CL:0000393,2.93e-13,61;CL:0000211,2.93e-13,61;CL:0000066,1.40e-11,253;CL:0000057,2.41e-11,76;CL:0000359,3.93e-11,32;CL:0002139,5.93e-11,24;CL:0000071,6.12e-09,18;CL:0002546,6.12e-09,18;CL:0000147,4.24e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000514;2.31e-10;43!CL:0000222;3.63e-09;121!CL:0002546;6.20e-09;18!CL:0000355;4.13e-08;58 | |ontology_enrichment_development_v019=CL:0000514;2.31e-10;43!CL:0000222;3.63e-09;121!CL:0002546;6.20e-09;18!CL:0000355;4.13e-08;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.66e-22!79;UBERON:0007798!1.66e-22!79;UBERON:0003914!3.66e-20!118;UBERON:0000055!4.22e-20!69;UBERON:0004872!7.67e-19!84;UBERON:0001981!3.26e-18!60;UBERON:0007500!3.26e-18!60;UBERON:0004537!3.26e-18!60;UBERON:0006965!3.26e-18!60;UBERON:0005256!6.48e-16!143;UBERON:0001637!1.61e-15!42;UBERON:0003509!1.61e-15!42;UBERON:0004572!1.61e-15!42;UBERON:0002100!2.51e-15!216;UBERON:0000486!2.57e-15!82;UBERON:0000490!5.18e-15!138;UBERON:0000914!8.94e-15!83;UBERON:0002329!8.94e-15!83;UBERON:0003077!8.94e-15!83;UBERON:0003059!8.94e-15!83;UBERON:0007282!8.94e-15!83;UBERON:0009618!8.94e-15!83;UBERON:0007285!8.94e-15!83;UBERON:0004535!1.14e-14!110;UBERON:0001009!4.04e-14!113;UBERON:0004290!4.10e-14!70;UBERON:0001134!1.17e-13!61;UBERON:0002036!1.17e-13!61;UBERON:0003082!1.17e-13!61;UBERON:0002385!3.41e-13!63;UBERON:0001015!3.41e-13!63;UBERON:0000383!3.41e-13!63;UBERON:0004573!4.14e-13!33;UBERON:0004571!4.14e-13!33;UBERON:0000119!6.29e-12!312;UBERON:0000468!1.03e-11!659;UBERON:0000483!1.26e-11!309;UBERON:0000926!2.87e-10!448;UBERON:0004120!2.87e-10!448;UBERON:0006603!2.87e-10!448;UBERON:0003104!4.02e-10!238;UBERON:0009142!4.02e-10!238;UBERON:0000947!5.78e-09!21;UBERON:0010191!5.78e-09!21;UBERON:0001986!6.12e-09!18;UBERON:0004638!6.12e-09!18;UBERON:0004852!6.12e-09!18;UBERON:0000467!1.94e-08!625;UBERON:0006914!2.15e-08!25;UBERON:0000480!3.37e-08!626;UBERON:0000475!3.85e-08!365;UBERON:0000487!4.93e-08!22;UBERON:0000477!1.14e-07!286;UBERON:0004111!3.17e-07!241;UBERON:0000922!3.33e-07!612;UBERON:0003886!5.11e-07!63;UBERON:0000481!8.63e-07!347 | |ontology_enrichment_uberon=UBERON:0002049!1.66e-22!79;UBERON:0007798!1.66e-22!79;UBERON:0003914!3.66e-20!118;UBERON:0000055!4.22e-20!69;UBERON:0004872!7.67e-19!84;UBERON:0001981!3.26e-18!60;UBERON:0007500!3.26e-18!60;UBERON:0004537!3.26e-18!60;UBERON:0006965!3.26e-18!60;UBERON:0005256!6.48e-16!143;UBERON:0001637!1.61e-15!42;UBERON:0003509!1.61e-15!42;UBERON:0004572!1.61e-15!42;UBERON:0002100!2.51e-15!216;UBERON:0000486!2.57e-15!82;UBERON:0000490!5.18e-15!138;UBERON:0000914!8.94e-15!83;UBERON:0002329!8.94e-15!83;UBERON:0003077!8.94e-15!83;UBERON:0003059!8.94e-15!83;UBERON:0007282!8.94e-15!83;UBERON:0009618!8.94e-15!83;UBERON:0007285!8.94e-15!83;UBERON:0004535!1.14e-14!110;UBERON:0001009!4.04e-14!113;UBERON:0004290!4.10e-14!70;UBERON:0001134!1.17e-13!61;UBERON:0002036!1.17e-13!61;UBERON:0003082!1.17e-13!61;UBERON:0002385!3.41e-13!63;UBERON:0001015!3.41e-13!63;UBERON:0000383!3.41e-13!63;UBERON:0004573!4.14e-13!33;UBERON:0004571!4.14e-13!33;UBERON:0000119!6.29e-12!312;UBERON:0000468!1.03e-11!659;UBERON:0000483!1.26e-11!309;UBERON:0000926!2.87e-10!448;UBERON:0004120!2.87e-10!448;UBERON:0006603!2.87e-10!448;UBERON:0003104!4.02e-10!238;UBERON:0009142!4.02e-10!238;UBERON:0000947!5.78e-09!21;UBERON:0010191!5.78e-09!21;UBERON:0001986!6.12e-09!18;UBERON:0004638!6.12e-09!18;UBERON:0004852!6.12e-09!18;UBERON:0000467!1.94e-08!625;UBERON:0006914!2.15e-08!25;UBERON:0000480!3.37e-08!626;UBERON:0000475!3.85e-08!365;UBERON:0000487!4.93e-08!22;UBERON:0000477!1.14e-07!286;UBERON:0004111!3.17e-07!241;UBERON:0000922!3.33e-07!612;UBERON:0003886!5.11e-07!63;UBERON:0000481!8.63e-07!347 | ||
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| ||
|short_description=p1@VAT1 | |short_description=p1@VAT1 | ||
}} | }} |
Latest revision as of 17:19, 24 September 2015
Short description: | p1@VAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VAT1_5end |
Coexpression cluster: | C1436_Melanocyte_Mesenchymal_Osteoblast_Monocytederived_Renal_leiomyoma_Smooth |
Association with transcript: | 0bp_to_ENST00000315674, ENST00000542468, uc010whk.1_5end |
EntrezGene: | VAT1 |
HGNC: | 16919 |
UniProt: | E9PF80B3KUF8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 6.09e-33 | 121 |
embryonic cell | 6.72e-31 | 250 |
lining cell | 6.80e-18 | 58 |
barrier cell | 6.80e-18 | 58 |
endothelial cell | 8.32e-17 | 36 |
meso-epithelial cell | 2.74e-16 | 45 |
muscle precursor cell | 2.52e-15 | 58 |
myoblast | 2.52e-15 | 58 |
multi-potent skeletal muscle stem cell | 2.52e-15 | 58 |
muscle cell | 1.40e-14 | 55 |
smooth muscle cell | 2.93e-14 | 43 |
smooth muscle myoblast | 2.93e-14 | 43 |
electrically responsive cell | 2.93e-13 | 61 |
electrically active cell | 2.93e-13 | 61 |
epithelial cell | 1.40e-11 | 253 |
fibroblast | 2.41e-11 | 76 |
vascular associated smooth muscle cell | 3.93e-11 | 32 |
endothelial cell of vascular tree | 5.93e-11 | 24 |
blood vessel endothelial cell | 6.12e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.12e-09 | 18 |
pigment cell | 4.24e-07 | 14 |