FFCP PHASE1:Hg19::chr14:74706150..74706155,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338917 | |EntrezGene=338917 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1975 | |HGNC=1975 | ||
|TSSclassifier=strong | |||
|UniProt=P58304 | |UniProt=P58304 | ||
|association_with_transcript=-19bp_to_ENST00000261980,NM_182894,uc001xpq.2_5end | |association_with_transcript=-19bp_to_ENST00000261980,NM_182894,uc001xpq.2_5end | ||
|cluster_id=chr14:74706150..74706155,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_1_at_VSX2_5end | |description=CAGE_peak_1_at_VSX2_5end | ||
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|ontology_enrichment_celltype=CL:0000064!1.04e-18!3;CL:0005012!1.04e-18!3;CL:0000067!1.04e-18!3;CL:0002304!1.04e-18!3;CL:0000075!2.04e-12!27;CL:0002322!9.77e-12!5;CL:0000710!5.48e-11!20;CL:0002077!9.69e-07!33 | |ontology_enrichment_celltype=CL:0000064!1.04e-18!3;CL:0005012!1.04e-18!3;CL:0000067!1.04e-18!3;CL:0002304!1.04e-18!3;CL:0000075!2.04e-12!27;CL:0002322!9.77e-12!5;CL:0000710!5.48e-11!20;CL:0002077!9.69e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0000306;2.94e-11;4!CL:0002222;2.94e-11;4!CL:0002224;2.94e-11;4!CL:0002322;3.22e-09;5!CL:0000075;7.13e-07;27 | |ontology_enrichment_celltype_v019=CL:0000306;2.94e-11;4!CL:0002222;2.94e-11;4!CL:0002224;2.94e-11;4!CL:0002322;3.22e-09;5!CL:0000075;7.13e-07;27 | ||
|ontology_enrichment_celltype_v019_2=CL:0000306,2.80e-11,4;CL:0002222,2.80e-11,4;CL:0002224,2.80e-11,4;CL:0002322,3.22e-09,5;CL:0000075,7.03e-07,27 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.50e-14;3 | |ontology_enrichment_development_v019=UBERON:0003056;1.50e-14;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001778!1.04e-18!3;UBERON:0001775!1.04e-18!3;UBERON:0000970!7.56e-17!20;UBERON:0002104!4.78e-16!21;UBERON:0000020!1.19e-14!23;UBERON:0007190!2.75e-14!1;UBERON:0000488!2.76e-14!4;UBERON:0001032!4.84e-14!24;UBERON:0004456!4.84e-14!24;UBERON:0000019!1.30e-11!19;UBERON:0000047!1.30e-11!19;UBERON:0004088!1.30e-11!19;UBERON:0003072!1.30e-11!19;UBERON:0003071!1.30e-11!19;UBERON:0004128!1.30e-11!19;UBERON:0007625!1.37e-11!11;UBERON:0001456!1.57e-10!21;UBERON:0002203!7.76e-10!6;UBERON:0001768!7.76e-10!6;UBERON:0001801!3.16e-09!14;UBERON:0003075!5.44e-09!86;UBERON:0007284!5.44e-09!86;UBERON:0002346!1.47e-08!90;UBERON:0003076!1.78e-08!15;UBERON:0003057!1.78e-08!15;UBERON:0002148!7.03e-08!2;UBERON:0009662!7.03e-08!2;UBERON:0005085!1.10e-07!29;UBERON:0002298!1.76e-07!8;UBERON:0000153!3.25e-07!129;UBERON:0007811!3.25e-07!129 | |ontology_enrichment_uberon=UBERON:0001778!1.04e-18!3;UBERON:0001775!1.04e-18!3;UBERON:0000970!7.56e-17!20;UBERON:0002104!4.78e-16!21;UBERON:0000020!1.19e-14!23;UBERON:0007190!2.75e-14!1;UBERON:0000488!2.76e-14!4;UBERON:0001032!4.84e-14!24;UBERON:0004456!4.84e-14!24;UBERON:0000019!1.30e-11!19;UBERON:0000047!1.30e-11!19;UBERON:0004088!1.30e-11!19;UBERON:0003072!1.30e-11!19;UBERON:0003071!1.30e-11!19;UBERON:0004128!1.30e-11!19;UBERON:0007625!1.37e-11!11;UBERON:0001456!1.57e-10!21;UBERON:0002203!7.76e-10!6;UBERON:0001768!7.76e-10!6;UBERON:0001801!3.16e-09!14;UBERON:0003075!5.44e-09!86;UBERON:0007284!5.44e-09!86;UBERON:0002346!1.47e-08!90;UBERON:0003076!1.78e-08!15;UBERON:0003057!1.78e-08!15;UBERON:0002148!7.03e-08!2;UBERON:0009662!7.03e-08!2;UBERON:0005085!1.10e-07!29;UBERON:0002298!1.76e-07!8;UBERON:0000153!3.25e-07!129;UBERON:0007811!3.25e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0000970;1.12e-18;20!UBERON:0002104;7.83e-18;21!UBERON:0000020;2.31e-16;23!UBERON:0001032;1.02e-15;24!UBERON:0004456;1.02e-15;24!UBERON:0010077;2.94e-11;4!UBERON:0005389;2.94e-11;4!UBERON:0000484;2.94e-11;4!UBERON:0000965;2.94e-11;4!UBERON:0001803;2.94e-11;4!UBERON:0000019;2.17e-09;19!UBERON:0000047;2.17e-09;19!UBERON:0004088;2.17e-09;19!UBERON:0010230;2.17e-09;19!UBERON:0000966;2.86e-09;5!UBERON:0005388;2.86e-09;5!UBERON:0001802;2.86e-09;5!UBERON:0001456;1.37e-08;21 | |ontology_enrichment_uberon_v019=UBERON:0000970;1.12e-18;20!UBERON:0002104;7.83e-18;21!UBERON:0000020;2.31e-16;23!UBERON:0001032;1.02e-15;24!UBERON:0004456;1.02e-15;24!UBERON:0010077;2.94e-11;4!UBERON:0005389;2.94e-11;4!UBERON:0000484;2.94e-11;4!UBERON:0000965;2.94e-11;4!UBERON:0001803;2.94e-11;4!UBERON:0000019;2.17e-09;19!UBERON:0000047;2.17e-09;19!UBERON:0004088;2.17e-09;19!UBERON:0010230;2.17e-09;19!UBERON:0000966;2.86e-09;5!UBERON:0005388;2.86e-09;5!UBERON:0001802;2.86e-09;5!UBERON:0001456;1.37e-08;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,7.83e-18,21;UBERON:0002104,7.83e-18,21;UBERON:0000020,1.02e-15,24;UBERON:0001032,1.02e-15,24;UBERON:0004456,1.02e-15,24;UBERON:0010077,2.80e-11,4;UBERON:0005389,2.80e-11,4;UBERON:0000484,2.80e-11,4;UBERON:0002546,2.80e-11,4;UBERON:0000965,2.80e-11,4;UBERON:0001803,2.80e-11,4;UBERON:0003073,2.80e-11,4;UBERON:0005426,2.80e-11,4;UBERON:0000019,5.70e-09,20;UBERON:0000047,5.70e-09,20;UBERON:0010312,5.70e-09,20;UBERON:0004088,5.70e-09,20;UBERON:0010230,5.70e-09,20;UBERON:0003072,5.70e-09,20;UBERON:0004128,5.70e-09,20;UBERON:0003071,5.70e-09,20;UBERON:0001456,3.04e-08,22;UBERON:0000966,6.34e-08,6;UBERON:0005388,6.34e-08,6;UBERON:0001802,6.34e-08,6 | |||
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|short_description=p1@VSX2 | |short_description=p1@VSX2 | ||
}} | }} |
Latest revision as of 00:23, 16 September 2015
Short description: | p1@VSX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VSX2_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | -19bp_to_ENST00000261980, NM_182894, uc001xpq.2_5end |
EntrezGene: | VSX2 |
HGNC: | 1975 |
UniProt: | P58304 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 2.80e-11 | 4 |
vertebrate lens cell | 2.80e-11 | 4 |
lens epithelial cell | 2.80e-11 | 4 |
embryonic stem cell | 3.22e-09 | 5 |
columnar/cuboidal epithelial cell | 7.03e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
eye | 7.83e-18 | 21 |
visual system | 7.83e-18 | 21 |
sense organ | 1.02e-15 | 24 |
sensory system | 1.02e-15 | 24 |
entire sense organ system | 1.02e-15 | 24 |
cuboidal epithelium | 2.80e-11 | 4 |
transparent eye structure | 2.80e-11 | 4 |
simple cuboidal epithelium | 2.80e-11 | 4 |
cranial placode | 2.80e-11 | 4 |
lens of camera-type eye | 2.80e-11 | 4 |
epithelium of lens | 2.80e-11 | 4 |
lens placode | 2.80e-11 | 4 |
lens vesicle | 2.80e-11 | 4 |
camera-type eye | 5.70e-09 | 20 |
simple eye | 5.70e-09 | 20 |
immature eye | 5.70e-09 | 20 |
ocular region | 5.70e-09 | 20 |
eyeball of camera-type eye | 5.70e-09 | 20 |
optic cup | 5.70e-09 | 20 |
optic vesicle | 5.70e-09 | 20 |
eye primordium | 5.70e-09 | 20 |
face | 3.04e-08 | 22 |
retina | 6.34e-08 | 6 |
photoreceptor array | 6.34e-08 | 6 |
posterior segment of eyeball | 6.34e-08 | 6 |