FFCP PHASE1:Hg19::chr16:20911174..20911242,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57149 | |EntrezGene=57149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |HGNC=25074 | ||
|TSSclassifier=strong | |||
|UniProt=O43325 | |UniProt=O43325 | ||
|association_with_transcript=-314bp_to_ENST00000439021,NM_020424,uc010bwi.1,uc010bwj.2,uc010bwk.2_5end | |association_with_transcript=-314bp_to_ENST00000439021,NM_020424,uc010bwi.1,uc010bwj.2,uc010bwk.2_5end | ||
|cluster_id=chr16:20911174..20911242,+ | |||
|coexpression_cluster_id=C703 | |coexpression_cluster_id=C703 | ||
|description=CAGE_peak_4_at_LYRM1_5end | |description=CAGE_peak_4_at_LYRM1_5end | ||
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|ontology_enrichment_celltype=CL:0000222!6.19e-16!119;CL:0000680!6.54e-10!57;CL:0000056!6.54e-10!57;CL:0000355!6.54e-10!57;CL:0000183!2.24e-09!59;CL:0000187!3.01e-09!54;CL:0000220!4.82e-09!246;CL:0002321!7.45e-09!248;CL:0000055!8.53e-09!180;CL:0000136!3.06e-08!15;CL:0000393!7.15e-08!60;CL:0000211!7.15e-08!60;CL:1000449!8.01e-08!16;CL:1000497!2.74e-07!18;CL:0002518!2.74e-07!18;CL:0000192!3.03e-07!42;CL:0000514!3.03e-07!42;CL:0000144!3.66e-07!625;CL:0002371!5.06e-07!591;CL:1000507!5.95e-07!12;CL:1000494!5.95e-07!12;CL:0000213!9.19e-07!57;CL:0000215!9.19e-07!57 | |ontology_enrichment_celltype=CL:0000222!6.19e-16!119;CL:0000680!6.54e-10!57;CL:0000056!6.54e-10!57;CL:0000355!6.54e-10!57;CL:0000183!2.24e-09!59;CL:0000187!3.01e-09!54;CL:0000220!4.82e-09!246;CL:0002321!7.45e-09!248;CL:0000055!8.53e-09!180;CL:0000136!3.06e-08!15;CL:0000393!7.15e-08!60;CL:0000211!7.15e-08!60;CL:1000449!8.01e-08!16;CL:1000497!2.74e-07!18;CL:0002518!2.74e-07!18;CL:0000192!3.03e-07!42;CL:0000514!3.03e-07!42;CL:0000144!3.66e-07!625;CL:0002371!5.06e-07!591;CL:1000507!5.95e-07!12;CL:1000494!5.95e-07!12;CL:0000213!9.19e-07!57;CL:0000215!9.19e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:1000449;3.98e-10;15!CL:0000136;4.86e-10;13!CL:1000497;6.78e-10;17!CL:0002518;6.78e-10;17!CL:1000507;5.19e-09;10!CL:1000494;5.19e-09;10!CL:0002681;4.84e-08;12!CL:0002584;4.84e-08;12!CL:0000359;5.70e-08;32 | |ontology_enrichment_celltype_v019=CL:1000449;3.98e-10;15!CL:0000136;4.86e-10;13!CL:1000497;6.78e-10;17!CL:0002518;6.78e-10;17!CL:1000507;5.19e-09;10!CL:1000494;5.19e-09;10!CL:0002681;4.84e-08;12!CL:0002584;4.84e-08;12!CL:0000359;5.70e-08;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.79e-15,121;CL:0000136,2.57e-10,15;CL:0000680,3.41e-10,58;CL:0000056,3.41e-10,58;CL:0000355,3.41e-10,58;CL:1000449,4.72e-10,15;CL:1000497,8.01e-10,17;CL:0002518,8.01e-10,17;CL:0000187,2.27e-09,55;CL:0002321,6.96e-09,250;CL:1000507,7.22e-09,10;CL:1000494,7.22e-09,10;CL:0000359,1.42e-08,32;CL:0002681,5.09e-08,12;CL:0002584,5.09e-08,12;CL:0000393,6.29e-08,61;CL:0000211,6.29e-08,61;CL:0000048,6.73e-08,427;CL:0000034,1.48e-07,441;CL:0000723,2.03e-07,433;CL:0000192,2.48e-07,43;CL:0000514,2.48e-07,43 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.42e-17!143;UBERON:0003914!7.47e-14!118;UBERON:0002100!2.31e-13!216;UBERON:0000490!3.83e-10!138;UBERON:0003104!4.62e-10!238;UBERON:0009142!4.62e-10!238;UBERON:0000914!7.83e-10!83;UBERON:0002329!7.83e-10!83;UBERON:0003077!7.83e-10!83;UBERON:0003059!7.83e-10!83;UBERON:0007282!7.83e-10!83;UBERON:0009618!7.83e-10!83;UBERON:0007285!7.83e-10!83;UBERON:0004290!1.53e-09!70;UBERON:0002417!2.42e-09!61;UBERON:0000916!2.42e-09!61;UBERON:0000926!2.55e-09!448;UBERON:0004120!2.55e-09!448;UBERON:0006603!2.55e-09!448;UBERON:0000486!1.64e-08!82;UBERON:0000080!2.29e-08!18;UBERON:0002120!2.29e-08!18;UBERON:0004875!2.29e-08!18;UBERON:0005721!2.29e-08!18;UBERON:0005754!2.29e-08!18;UBERON:0007297!2.29e-08!18;UBERON:0006555!3.78e-08!17;UBERON:0005103!3.78e-08!17;UBERON:0000083!3.78e-08!17;UBERON:0009201!3.78e-08!17;UBERON:0004819!3.78e-08!17;UBERON:0006553!3.78e-08!17;UBERON:0003074!3.78e-08!17;UBERON:0003060!3.78e-08!17;UBERON:0002385!6.26e-08!63;UBERON:0001015!6.26e-08!63;UBERON:0000383!6.26e-08!63;UBERON:0004211!8.01e-08!16;UBERON:0001285!8.01e-08!16;UBERON:0007684!8.01e-08!16;UBERON:0003220!8.01e-08!16;UBERON:0004208!8.01e-08!16;UBERON:0001134!8.81e-08!61;UBERON:0002036!8.81e-08!61;UBERON:0003082!8.81e-08!61;UBERON:0004876!1.01e-07!20;UBERON:0005172!1.47e-07!55;UBERON:0005173!1.47e-07!55;UBERON:0000483!2.78e-07!309;UBERON:0000119!2.80e-07!312;UBERON:0000481!4.06e-07!347;UBERON:0009773!5.95e-07!12;UBERON:0001231!5.95e-07!12;UBERON:0004810!5.95e-07!12;UBERON:0003887!6.39e-07!21;UBERON:0002049!7.18e-07!79;UBERON:0007798!7.18e-07!79 | |ontology_enrichment_uberon=UBERON:0005256!2.42e-17!143;UBERON:0003914!7.47e-14!118;UBERON:0002100!2.31e-13!216;UBERON:0000490!3.83e-10!138;UBERON:0003104!4.62e-10!238;UBERON:0009142!4.62e-10!238;UBERON:0000914!7.83e-10!83;UBERON:0002329!7.83e-10!83;UBERON:0003077!7.83e-10!83;UBERON:0003059!7.83e-10!83;UBERON:0007282!7.83e-10!83;UBERON:0009618!7.83e-10!83;UBERON:0007285!7.83e-10!83;UBERON:0004290!1.53e-09!70;UBERON:0002417!2.42e-09!61;UBERON:0000916!2.42e-09!61;UBERON:0000926!2.55e-09!448;UBERON:0004120!2.55e-09!448;UBERON:0006603!2.55e-09!448;UBERON:0000486!1.64e-08!82;UBERON:0000080!2.29e-08!18;UBERON:0002120!2.29e-08!18;UBERON:0004875!2.29e-08!18;UBERON:0005721!2.29e-08!18;UBERON:0005754!2.29e-08!18;UBERON:0007297!2.29e-08!18;UBERON:0006555!3.78e-08!17;UBERON:0005103!3.78e-08!17;UBERON:0000083!3.78e-08!17;UBERON:0009201!3.78e-08!17;UBERON:0004819!3.78e-08!17;UBERON:0006553!3.78e-08!17;UBERON:0003074!3.78e-08!17;UBERON:0003060!3.78e-08!17;UBERON:0002385!6.26e-08!63;UBERON:0001015!6.26e-08!63;UBERON:0000383!6.26e-08!63;UBERON:0004211!8.01e-08!16;UBERON:0001285!8.01e-08!16;UBERON:0007684!8.01e-08!16;UBERON:0003220!8.01e-08!16;UBERON:0004208!8.01e-08!16;UBERON:0001134!8.81e-08!61;UBERON:0002036!8.81e-08!61;UBERON:0003082!8.81e-08!61;UBERON:0004876!1.01e-07!20;UBERON:0005172!1.47e-07!55;UBERON:0005173!1.47e-07!55;UBERON:0000483!2.78e-07!309;UBERON:0000119!2.80e-07!312;UBERON:0000481!4.06e-07!347;UBERON:0009773!5.95e-07!12;UBERON:0001231!5.95e-07!12;UBERON:0004810!5.95e-07!12;UBERON:0003887!6.39e-07!21;UBERON:0002049!7.18e-07!79;UBERON:0007798!7.18e-07!79 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.98e-10;15!UBERON:0004819;3.98e-10;15!UBERON:0001285;3.98e-10;15!UBERON:0007684;3.98e-10;15!UBERON:0004211;5.19e-09;10!UBERON:0009773;5.19e-09;10!UBERON:0001231;5.19e-09;10!UBERON:0004810;5.19e-09;10!UBERON:0001225;4.84e-08;12!UBERON:0008987;4.84e-08;12!UBERON:0002113;1.32e-07;24!UBERON:0011143;1.32e-07;24!UBERON:0004573;6.19e-07;33!UBERON:0004571;6.19e-07;33!UBERON:0001851;6.30e-07;15!UBERON:0000353;9.51e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0006555;3.98e-10;15!UBERON:0004819;3.98e-10;15!UBERON:0001285;3.98e-10;15!UBERON:0007684;3.98e-10;15!UBERON:0004211;5.19e-09;10!UBERON:0009773;5.19e-09;10!UBERON:0001231;5.19e-09;10!UBERON:0004810;5.19e-09;10!UBERON:0001225;4.84e-08;12!UBERON:0008987;4.84e-08;12!UBERON:0002113;1.32e-07;24!UBERON:0011143;1.32e-07;24!UBERON:0004573;6.19e-07;33!UBERON:0004571;6.19e-07;33!UBERON:0001851;6.30e-07;15!UBERON:0000353;9.51e-07;15 | ||
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| ||
|short_description=p4@LYRM1 | |short_description=p4@LYRM1 | ||
}} | }} |
Latest revision as of 03:05, 25 September 2015
Short description: | p4@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LYRM1_5end |
Coexpression cluster: | C703_liver_hepatocellular_Hepatocyte_hepatoblastoma_colon_gastrointestinal_mature |
Association with transcript: | -314bp_to_ENST00000439021, NM_020424, uc010bwi.1, uc010bwj.2, uc010bwk.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.79e-15 | 121 |
fat cell | 2.57e-10 | 15 |
muscle precursor cell | 3.41e-10 | 58 |
myoblast | 3.41e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.41e-10 | 58 |
epithelial cell of nephron | 4.72e-10 | 15 |
kidney cell | 8.01e-10 | 17 |
kidney epithelial cell | 8.01e-10 | 17 |
muscle cell | 2.27e-09 | 55 |
embryonic cell | 6.96e-09 | 250 |
kidney tubule cell | 7.22e-09 | 10 |
nephron tubule epithelial cell | 7.22e-09 | 10 |
vascular associated smooth muscle cell | 1.42e-08 | 32 |
kidney cortical cell | 5.09e-08 | 12 |
renal cortical epithelial cell | 5.09e-08 | 12 |
electrically responsive cell | 6.29e-08 | 61 |
electrically active cell | 6.29e-08 | 61 |
multi fate stem cell | 6.73e-08 | 427 |
stem cell | 1.48e-07 | 441 |
somatic stem cell | 2.03e-07 | 433 |
smooth muscle cell | 2.48e-07 | 43 |
smooth muscle myoblast | 2.48e-07 | 43 |