FFCP PHASE1:Hg19::chr20:36794902..36794917,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:36794902..36794917,-
|short_description=p6@TGM2
|description=CAGE_peak_6_at_TGM2_5end
|association_with_transcript=0bp_to_ENST00000373403_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7052 | |EntrezGene=7052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11778 | |HGNC=11778 | ||
|TSSclassifier=strong | |||
|UniProt=A2A299 | |UniProt=A2A299 | ||
|association_with_transcript=0bp_to_ENST00000373403_5end | |||
|cluster_id=chr20:36794902..36794917,- | |||
|coexpression_cluster_id=C4030 | |||
|description=CAGE_peak_6_at_TGM2_5end | |||
|id=chr20:36794902..36794917,- | |||
|ontology_enrichment_celltype=CL:0005020!5.80e-07!6;CL:0002138!5.80e-07!6;CL:0005022!5.80e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000349;9.32e-18;19!CL:0002577;8.53e-11;3!CL:0002541;1.41e-10;3!CL:0002144;1.39e-09;3!CL:0002504;3.00e-09;3!CL:1000279;3.00e-09;3!CL:1000280;3.00e-09;3!CL:0002536;2.38e-07;2!CL:0002195;4.65e-07;2!CL:0002571;4.65e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.42e-18,19;CL:0002577,8.43e-11,3;CL:0002541,1.27e-10,3;CL:0002144,1.71e-09,3;CL:0002504,1.92e-09,3;CL:1000279,1.92e-09,3;CL:1000280,1.92e-09,3;CL:0002536,2.28e-07,2;CL:0002195,4.32e-07,2;CL:0002571,4.32e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.97e-13!115;UBERON:0005631!2.19e-12!14;UBERON:0000158!2.19e-12!14;UBERON:0000478!7.17e-11!24;UBERON:0003124!1.92e-10!7;UBERON:0001473!4.79e-09!8;UBERON:0004536!4.79e-09!8;UBERON:0006558!4.79e-09!8;UBERON:0002465!1.45e-08!10;UBERON:0004872!3.27e-08!84;UBERON:0002049!3.94e-08!79;UBERON:0007798!3.94e-08!79;UBERON:0004923!5.38e-08!57;UBERON:0001009!1.42e-07!113;UBERON:0000477!3.15e-07!286;UBERON:0000055!3.94e-07!69;UBERON:0004535!4.45e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.61e-19;24!UBERON:0001987;7.64e-14;4!UBERON:0005631;8.06e-11;10!UBERON:0000158;8.06e-11;10!UBERON:0003124;1.41e-10;3!UBERON:0000920;1.41e-10;3!UBERON:0010523;1.39e-09;3!UBERON:0001915;1.39e-09;3!UBERON:0001982;1.39e-09;3!UBERON:0000160;7.89e-09;17!UBERON:0005409;1.80e-08;22!UBERON:0000077;1.71e-07;27!UBERON:0002081;7.16e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,9.74e-23,7;UBERON:0005631,2.11e-21,14;UBERON:0000158,2.11e-21,14;UBERON:0000478,2.28e-19,24;UBERON:0001987,7.56e-14,4;UBERON:0004340,7.56e-14,4;UBERON:0005409,3.91e-11,25;UBERON:0000920,1.27e-10,3;UBERON:0010523,1.71e-09,3;UBERON:0001915,1.71e-09,3;UBERON:0001982,1.71e-09,3;UBERON:0000160,6.43e-09,17;UBERON:0004923,3.52e-08,66;UBERON:0002081,5.83e-07,2;UBERON:0010227,5.83e-07,2;UBERON:0000077,6.90e-07,29 | |||
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| ||
|short_description=p6@TGM2 | |||
}} | }} |
Latest revision as of 03:17, 16 September 2015
Short description: | p6@TGM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_TGM2_5end |
Coexpression cluster: | C4030_Placental_placenta_chorionic_cervix_Lymphatic_Amniotic_spleen |
Association with transcript: | 0bp_to_ENST00000373403_5end |
EntrezGene: | TGM2 |
HGNC: | 11778 |
UniProt: | A2A299 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.42e-18 | 19 |
placental epithelial cell | 8.43e-11 | 3 |
chorionic membrane mesenchymal stem cell | 1.27e-10 | 3 |
capillary endothelial cell | 1.71e-09 | 3 |
enteric smooth muscle cell | 1.92e-09 | 3 |
smooth muscle cell of large intestine | 1.92e-09 | 3 |
smooth muscle cell of colon | 1.92e-09 | 3 |
amniotic epithelial cell | 2.28e-07 | 2 |
hepatic stem cell | 4.32e-07 | 2 |
hepatic mesenchymal stem cell | 4.32e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chorion | 9.74e-23 | 7 |
extraembryonic membrane | 2.11e-21 | 14 |
membranous layer | 2.11e-21 | 14 |
extraembryonic structure | 2.28e-19 | 24 |
placenta | 7.56e-14 | 4 |
allantois | 7.56e-14 | 4 |
gastrointestinal system | 3.91e-11 | 25 |
egg chorion | 1.27e-10 | 3 |
microcirculatory vessel | 1.71e-09 | 3 |
endothelium of capillary | 1.71e-09 | 3 |
capillary | 1.71e-09 | 3 |
intestine | 6.43e-09 | 17 |
organ component layer | 3.52e-08 | 66 |
cardiac atrium | 5.83e-07 | 2 |
future cardiac atrium | 5.83e-07 | 2 |
mixed endoderm/mesoderm-derived structure | 6.90e-07 | 29 |