FFCP PHASE1:Hg19::chr4:41540152..41540157,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt=G5EA03 | |UniProt=G5EA03 | ||
|association_with_transcript=-16bp_to_ENST00000503057_5end | |association_with_transcript=-16bp_to_ENST00000503057_5end | ||
|cluster_id=chr4:41540152..41540157,+ | |||
|coexpression_cluster_id=C2792 | |coexpression_cluster_id=C2792 | ||
|description=CAGE_peak_20_at_LIMCH1_5end | |description=CAGE_peak_20_at_LIMCH1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000077!6.76e-10!19;CL:0002334!7.03e-07!12 | |ontology_enrichment_celltype=CL:0000077!6.76e-10!19;CL:0002334!7.03e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;1.66e-36;12!CL:0002579;4.10e-28;3!CL:0002580;4.93e-28;3!CL:0002581;2.17e-10;1!CL:0002616;2.17e-10;1!CL:0000319;2.17e-10;1!CL:0000077;8.14e-08;19 | |ontology_enrichment_celltype_v019=CL:0002334;1.66e-36;12!CL:0002579;4.10e-28;3!CL:0002580;4.93e-28;3!CL:0002581;2.17e-10;1!CL:0002616;2.17e-10;1!CL:0000319;2.17e-10;1!CL:0000077;8.14e-08;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0002334,1.72e-36,12;CL:0002580,2.06e-28,3;CL:0002579,1.30e-27,3;CL:0002616,1.08e-10,1;CL:0000319,1.19e-10,1;CL:0002581,1.73e-10,1;CL:0000057,1.95e-08,76;CL:0000077,7.18e-08,19 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3030;2.17e-10;1 | |ontology_enrichment_disease_v019=DOID:3030;2.17e-10;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3030,1.19e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.64e-14!9;UBERON:0000064!2.71e-11!219;UBERON:0007023!3.56e-09!115;UBERON:0001557!1.82e-08!19;UBERON:0004457!2.28e-08!12;UBERON:0000042!2.28e-08!12;UBERON:0003688!1.07e-07!6;UBERON:0002358!1.07e-07!6;UBERON:0003684!1.07e-07!6;UBERON:0001178!1.07e-07!6;UBERON:0001869!2.03e-07!32;UBERON:0001049!2.26e-07!57;UBERON:0005068!2.26e-07!57;UBERON:0006241!2.26e-07!57;UBERON:0007135!2.26e-07!57;UBERON:0001893!8.89e-07!34 | |ontology_enrichment_uberon=UBERON:0001737!2.64e-14!9;UBERON:0000064!2.71e-11!219;UBERON:0007023!3.56e-09!115;UBERON:0001557!1.82e-08!19;UBERON:0004457!2.28e-08!12;UBERON:0000042!2.28e-08!12;UBERON:0003688!1.07e-07!6;UBERON:0002358!1.07e-07!6;UBERON:0003684!1.07e-07!6;UBERON:0001178!1.07e-07!6;UBERON:0001869!2.03e-07!32;UBERON:0001049!2.26e-07!57;UBERON:0005068!2.26e-07!57;UBERON:0006241!2.26e-07!57;UBERON:0007135!2.26e-07!57;UBERON:0001893!8.89e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0005406;4.94e-19;2!UBERON:0000310;7.71e-15;10!UBERON:0003688;2.23e-14;6!UBERON:0002358;2.23e-14;6!UBERON:0003684;2.23e-14;6!UBERON:0001178;2.23e-14;6!UBERON:0001443;1.64e-13;11!UBERON:0004457;9.13e-10;9!UBERON:0000042;9.13e-10;9 | |ontology_enrichment_uberon_v019=UBERON:0005406;4.94e-19;2!UBERON:0000310;7.71e-15;10!UBERON:0003688;2.23e-14;6!UBERON:0002358;2.23e-14;6!UBERON:0003684;2.23e-14;6!UBERON:0001178;2.23e-14;6!UBERON:0001443;1.64e-13;11!UBERON:0004457;9.13e-10;9!UBERON:0000042;9.13e-10;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005406,1.97e-19,2;UBERON:0000310,6.70e-15,10;UBERON:0003688,3.94e-14,6;UBERON:0002358,3.94e-14,6;UBERON:0003684,3.94e-14,6;UBERON:0001178,3.94e-14,6;UBERON:0001443,1.45e-13,11;UBERON:0004457,2.84e-12,12;UBERON:0000042,2.84e-12,12 | |||
|phase1_expression=1.09007027562334,0.642301571672949,0.704772020479856,0,0.893922188854576,1.74467704820074,0,0,0,0,0,0.218441372130172,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0.506328996723799,1.46155507741798,0,0.0920498986422993,0,0,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,1.01150814046861,0.482022059766964,0.772057809126758,1.08939722046203,0.474541238222193,0.404493924480493,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23297027036899,1.68808170616869,1.68396056659844,1.02511319404561,3.07024349440022,1.12597744800525,1.48418066444991,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0.703347082052564,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.331737779793674,0,0,0.653630781113941,0,0.0769502585037971,0.227884111694002,0,0,0,0,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,1.36677789121976,0,0.135904206073614,0.209205692624666,0,0,1.20084057741958,0.273810757783986,0,0,0,0,0,0,0,0,0,0.335917362433631,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.364497339948148,0,0.157611414598396,0.0524545881349981,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,3.14408610199332,0,0,0,0,0.638341257770182,0.544017803369474,0,0,0,0,0.886068179966986,0.122026264901963,0.3755727921195,0,0.221858103073705,0.745156835296601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0.464033759878494,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0.226705925512272,0.694567422971502,1.95789363605174,0.179088841081487,1.54400723580486,0.877136198314828,0.176689145945881,0.38582807654183,1.18259708457151,0,0,1.21543982470953,0,0,0,0,0,1.72041036127604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0,0.150420656698515,0,0,0,0.818859587550484,0,0.202612753855184,0,0,0.126831620387814,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0.514464028312255,0.271878931907327,0.197318320688547,0,0,0.078493092850514,0,2.24217730651031,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0.169927114687817,0.845855261818682,1.4180735354187,0,0,0.352894871715692,0,0.730336388246517,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0,0.435433495793923,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 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|phase1_expression=1.09007027562334,0.642301571672949,0.704772020479856,0,0.893922188854576,1.74467704820074,0,0,0,0,0,0.218441372130172,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0.506328996723799,1.46155507741798,0,0.0920498986422993,0,0,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,1.01150814046861,0.482022059766964,0.772057809126758,1.08939722046203,0.474541238222193,0.404493924480493,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23297027036899,1.68808170616869,1.68396056659844,1.02511319404561,3.07024349440022,1.12597744800525,1.48418066444991,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0.703347082052564,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.331737779793674,0,0,0.653630781113941,0,0.0769502585037971,0.227884111694002,0,0,0,0,0.549585560411174,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,1.36677789121976,0,0.135904206073614,0.209205692624666,0,0,1.20084057741958,0.273810757783986,0,0,0,0,0,0,0,0,0,0.335917362433631,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.364497339948148,0,0.157611414598396,0.0524545881349981,0,0.179287339332845,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,3.14408610199332,0,0,0,0,0.638341257770182,0.544017803369474,0,0,0,0,0.886068179966986,0.122026264901963,0.3755727921195,0,0.221858103073705,0.745156835296601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0.464033759878494,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0.226705925512272,0.694567422971502,1.95789363605174,0.179088841081487,1.54400723580486,0.877136198314828,0.176689145945881,0.38582807654183,1.18259708457151,0,0,1.21543982470953,0,0,0,0,0,1.72041036127604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0,0.150420656698515,0,0,0,0.818859587550484,0,0.202612753855184,0,0,0.126831620387814,0,0,0.496211178389294,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0.514464028312255,0.271878931907327,0.197318320688547,0,0,0.078493092850514,0,2.24217730651031,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410651227424988,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0,0.169927114687817,0.845855261818682,1.4180735354187,0,0,0.352894871715692,0,0.730336388246517,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,0,0,0,0,0,0.435433495793923,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p20@LIMCH1 | |short_description=p20@LIMCH1 | ||
}} | }} |
Latest revision as of 19:38, 17 September 2015
Short description: | p20@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_LIMCH1_5end |
Coexpression cluster: | C2792_lung_Preadipocyte_Adipocyte_mesothelioma_spleen_mucinous_skeletal |
Association with transcript: | -16bp_to_ENST00000503057_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | G5EA03 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 1.72e-36 | 12 |
preadipocyte of the breast | 2.06e-28 | 3 |
omentum preadipocyte | 1.30e-27 | 3 |
perirenal adipocyte cell | 1.08e-10 | 1 |
mucus secreting cell | 1.19e-10 | 1 |
perirenal preadipocyte | 1.73e-10 | 1 |
fibroblast | 1.95e-08 | 76 |
mesothelial cell | 7.18e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
perirenal fat | 1.97e-19 | 2 |
breast | 6.70e-15 | 10 |
omentum | 3.94e-14 | 6 |
peritoneum | 3.94e-14 | 6 |
abdominal cavity | 3.94e-14 | 6 |
visceral peritoneum | 3.94e-14 | 6 |
chest | 1.45e-13 | 11 |
cavity lining | 2.84e-12 | 12 |
serous membrane | 2.84e-12 | 12 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.19e-10 | 1 |