FFCP PHASE1:Hg19::chr19:10305752..10305792,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1786 | |EntrezGene=1786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2976 | |HGNC=2976 | ||
|TSSclassifier=strong | |||
|UniProt=P26358,F5GX68 | |UniProt=P26358,F5GX68 | ||
|association_with_transcript=0bp_to_ENST00000340748,ENST00000359526,ENST00000540357,NM_001130823,NM_001379,uc002mng.2,uc002mnh.2,uc010xlc.1,uc010xld.1_5end | |association_with_transcript=0bp_to_ENST00000340748,ENST00000359526,ENST00000540357,NM_001130823,NM_001379,uc002mng.2,uc002mnh.2,uc010xlc.1,uc010xld.1_5end | ||
|cluster_id=chr19:10305752..10305792,- | |||
|description=CAGE_peak_2_at_DNMT1_5end | |description=CAGE_peak_2_at_DNMT1_5end | ||
|id=chr19:10305752..10305792,- | |id=chr19:10305752..10305792,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.40e-23!115;UBERON:0001049!8.19e-11!57;UBERON:0005068!8.19e-11!57;UBERON:0006241!8.19e-11!57;UBERON:0007135!8.19e-11!57;UBERON:0000955!2.24e-09!69;UBERON:0006238!2.24e-09!69;UBERON:0005743!2.36e-09!86;UBERON:0002616!2.82e-09!59;UBERON:0003080!3.66e-09!42;UBERON:0000468!3.81e-09!659;UBERON:0001017!4.63e-09!82;UBERON:0002780!9.66e-09!41;UBERON:0001890!9.66e-09!41;UBERON:0006240!9.66e-09!41;UBERON:0003075!4.50e-08!86;UBERON:0007284!4.50e-08!86;UBERON:0000073!1.54e-07!94;UBERON:0001016!1.54e-07!94;UBERON:0000475!1.54e-07!365;UBERON:0002346!5.38e-07!90;UBERON:0000467!7.05e-07!625;UBERON:0000480!7.85e-07!626;UBERON:0000062!8.36e-07!511 | |ontology_enrichment_uberon=UBERON:0007023!7.40e-23!115;UBERON:0001049!8.19e-11!57;UBERON:0005068!8.19e-11!57;UBERON:0006241!8.19e-11!57;UBERON:0007135!8.19e-11!57;UBERON:0000955!2.24e-09!69;UBERON:0006238!2.24e-09!69;UBERON:0005743!2.36e-09!86;UBERON:0002616!2.82e-09!59;UBERON:0003080!3.66e-09!42;UBERON:0000468!3.81e-09!659;UBERON:0001017!4.63e-09!82;UBERON:0002780!9.66e-09!41;UBERON:0001890!9.66e-09!41;UBERON:0006240!9.66e-09!41;UBERON:0003075!4.50e-08!86;UBERON:0007284!4.50e-08!86;UBERON:0000073!1.54e-07!94;UBERON:0001016!1.54e-07!94;UBERON:0000475!1.54e-07!365;UBERON:0002346!5.38e-07!90;UBERON:0000467!7.05e-07!625;UBERON:0000480!7.85e-07!626;UBERON:0000062!8.36e-07!511 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.29e-25,114;UBERON:0001049,8.17e-13,56;UBERON:0005068,8.17e-13,56;UBERON:0006241,8.17e-13,56;UBERON:0007135,8.17e-13,56;UBERON:0000073,2.60e-11,53;UBERON:0002616,2.60e-11,53;UBERON:0002780,2.15e-10,41;UBERON:0001890,2.15e-10,41;UBERON:0003080,2.15e-10,41;UBERON:0006240,2.15e-10,41;UBERON:0000955,6.80e-10,68;UBERON:0006238,6.80e-10,68;UBERON:0001017,1.79e-09,81;UBERON:0003075,1.75e-08,82;UBERON:0007284,1.75e-08,82;UBERON:0001893,5.22e-08,34;UBERON:0001016,1.00e-07,89;UBERON:0002346,2.00e-07,86;UBERON:0003528,2.82e-07,34;UBERON:0002020,2.82e-07,34;UBERON:0001869,4.82e-07,32;UBERON:0002791,5.14e-07,32 | |||
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| ||
|short_description=p2@DNMT1 | |short_description=p2@DNMT1 | ||
}} | }} |
Latest revision as of 23:51, 24 September 2015
Short description: | p2@DNMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DNMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000340748, ENST00000359526, ENST00000540357, NM_001130823, NM_001379, uc002mng.2, uc002mnh.2, uc010xlc.1, uc010xld.1_5end |
EntrezGene: | DNMT1 |
HGNC: | 2976 |
UniProt: | P26358F5GX68 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.29e-25 | 114 |
neural tube | 8.17e-13 | 56 |
neural rod | 8.17e-13 | 56 |
future spinal cord | 8.17e-13 | 56 |
neural keel | 8.17e-13 | 56 |
regional part of nervous system | 2.60e-11 | 53 |
regional part of brain | 2.60e-11 | 53 |
regional part of forebrain | 2.15e-10 | 41 |
forebrain | 2.15e-10 | 41 |
anterior neural tube | 2.15e-10 | 41 |
future forebrain | 2.15e-10 | 41 |
brain | 6.80e-10 | 68 |
future brain | 6.80e-10 | 68 |
central nervous system | 1.79e-09 | 81 |
neural plate | 1.75e-08 | 82 |
presumptive neural plate | 1.75e-08 | 82 |
telencephalon | 5.22e-08 | 34 |
nervous system | 1.00e-07 | 89 |
neurectoderm | 2.00e-07 | 86 |
brain grey matter | 2.82e-07 | 34 |
gray matter | 2.82e-07 | 34 |
cerebral hemisphere | 4.82e-07 | 32 |
regional part of telencephalon | 5.14e-07 | 32 |