FFCP PHASE1:Hg19::chr19:43708378..43708400,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5672 | |EntrezGene=5672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9521 | |HGNC=9521 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-175bp_to_ENST00000495316_5end | |association_with_transcript=-175bp_to_ENST00000495316_5end | ||
|cluster_id=chr19:43708378..43708400,- | |||
|coexpression_cluster_id=C34 | |coexpression_cluster_id=C34 | ||
|description=CAGE_peak_5_at_PSG4_5end | |description=CAGE_peak_5_at_PSG4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000077!7.60e-11!19;CL:0002620!1.50e-08!23;CL:0000197!1.84e-07!6;CL:0000098!1.84e-07!6;CL:0002167!1.84e-07!6;CL:0002586!6.37e-07!3 | |ontology_enrichment_celltype=CL:0000077!7.60e-11!19;CL:0002620!1.50e-08!23;CL:0000197!1.84e-07!6;CL:0000098!1.84e-07!6;CL:0002167!1.84e-07!6;CL:0002586!6.37e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000511;2.73e-29;1!CL:0002625;2.73e-29;1!CL:0000216;2.73e-29;1!CL:0002595;6.21e-07;5!CL:0002537;6.21e-07;5!CL:0000077;6.77e-07;19 | |ontology_enrichment_celltype_v019=CL:0000511;2.73e-29;1!CL:0002625;2.73e-29;1!CL:0000216;2.73e-29;1!CL:0002595;6.21e-07;5!CL:0002537;6.21e-07;5!CL:0000077;6.77e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.78e-29,1;CL:0002625,1.78e-29,1;CL:0000216,1.78e-29,1;CL:0002595,6.04e-07,5;CL:0000077,6.57e-07,19;CL:0002537,6.77e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0003124;7.48e-30;1 | |ontology_enrichment_development_v019=UBERON:0003124;7.48e-30;1 | ||
|ontology_enrichment_disease=DOID:17!1.91e-08!5;DOID:450!1.91e-08!5;DOID:66!1.91e-08!5;DOID:423!1.91e-08!5;DOID:0080000!1.91e-08!5;DOID:11722!1.91e-08!5 | |ontology_enrichment_disease=DOID:17!1.91e-08!5;DOID:450!1.91e-08!5;DOID:66!1.91e-08!5;DOID:423!1.91e-08!5;DOID:0080000!1.91e-08!5;DOID:11722!1.91e-08!5 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001781!6.37e-07!3;UBERON:0001782!6.37e-07!3;UBERON:0005424!6.37e-07!3 | |ontology_enrichment_uberon=UBERON:0001781!6.37e-07!3;UBERON:0001782!6.37e-07!3;UBERON:0005424!6.37e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001136;2.73e-29;1!UBERON:0001343;2.73e-29;1!UBERON:0004910;2.73e-29;1!UBERON:0004813;2.73e-29;1!UBERON:0004909;2.21e-15;2!UBERON:0001987;1.70e-08;4!UBERON:0005904;2.35e-08;4!UBERON:0003834;6.21e-07;5!UBERON:0001533;6.21e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0001136;2.73e-29;1!UBERON:0001343;2.73e-29;1!UBERON:0004910;2.73e-29;1!UBERON:0004813;2.73e-29;1!UBERON:0004909;2.21e-15;2!UBERON:0001987;1.70e-08;4!UBERON:0005904;2.35e-08;4!UBERON:0003834;6.21e-07;5!UBERON:0001533;6.21e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.78e-29,1;UBERON:0001343,1.78e-29,1;UBERON:0004910,1.78e-29,1;UBERON:0005154,1.78e-29,1;UBERON:0005295,1.78e-29,1;UBERON:0004813,1.78e-29,1;UBERON:0005297,1.78e-29,1;UBERON:0005294,1.78e-29,1;UBERON:0010141,1.78e-29,1;UBERON:0005891,1.78e-29,1;UBERON:0004909,1.78e-15,2;UBERON:0004871,4.69e-15,8;UBERON:0005631,4.38e-09,14;UBERON:0000158,4.38e-09,14;UBERON:0001987,1.70e-08,4;UBERON:0004340,1.70e-08,4;UBERON:0005904,2.11e-08,4;UBERON:0003834,6.04e-07,5;UBERON:0001533,6.04e-07,5 | |||
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| ||
|short_description=p5@PSG4 | |short_description=p5@PSG4 | ||
}} | }} |
Latest revision as of 10:36, 18 September 2015
Short description: | p5@PSG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PSG4_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | -175bp_to_ENST00000495316_5end |
EntrezGene: | PSG4 |
HGNC: | 9521 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.78e-29 | 1 |
seminiferous tubule epithelial cell | 1.78e-29 | 1 |
Sertoli cell | 1.78e-29 | 1 |
smooth muscle cell of the subclavian artery | 6.04e-07 | 5 |
mesothelial cell | 6.57e-07 | 19 |
amnion mesenchymal stem cell | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.78e-29 | 1 |
seminiferous tubule of testis | 1.78e-29 | 1 |
epithelium of male gonad | 1.78e-29 | 1 |
epithelial cord | 1.78e-29 | 1 |
sex cord | 1.78e-29 | 1 |
seminiferous tubule epithelium | 1.78e-29 | 1 |
testis sex cord | 1.78e-29 | 1 |
genital ridge | 1.78e-29 | 1 |
primitive sex cord of indifferent gonad | 1.78e-29 | 1 |
coelomic epithelium | 1.78e-29 | 1 |
epithelium of gonad | 1.78e-15 | 2 |
somatic layer of lateral plate mesoderm | 4.69e-15 | 8 |
extraembryonic membrane | 4.38e-09 | 14 |
membranous layer | 4.38e-09 | 14 |
placenta | 1.70e-08 | 4 |
allantois | 1.70e-08 | 4 |
duct of male reproductive system | 2.11e-08 | 4 |
thoracic segment blood vessel | 6.04e-07 | 5 |
subclavian artery | 6.04e-07 | 5 |