FFCP PHASE1:Hg19::chr20:55091871..55091878,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:55091871..55091878,+
|short_description=p3@FAM209A
|description=CAGE_peak_3_at_FAM209A_5end
|association_with_transcript=-364bp_to_ENST00000481560_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=200232 | |EntrezGene=200232 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16100 | |HGNC=16100 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-364bp_to_ENST00000481560_5end | |||
|cluster_id=chr20:55091871..55091878,+ | |||
|coexpression_cluster_id=C134 | |||
|description=CAGE_peak_3_at_FAM209A_5end | |||
|id=chr20:55091871..55091878,+ | |||
|ontology_enrichment_celltype=CL:0000148!8.01e-21!10;CL:0000541!8.01e-21!10;CL:0000147!1.38e-14!14;CL:0002567!1.70e-14!3;CL:0000710!6.63e-10!20;CL:0002077!2.66e-07!33;CL:0000075!4.47e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002567;2.17e-54;3!CL:0000148;5.88e-45;10!CL:0000147;3.30e-32;14!CL:0000710;1.27e-22;20!CL:0002566;1.42e-19;1!CL:0002077;8.83e-18;34!CL:0000075;8.30e-17;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,1.51e-54,3;CL:0000148,3.90e-45,10;CL:0000541,3.90e-45,10;CL:0000147,2.47e-32,14;CL:0000710,1.04e-22,20;CL:0002566,1.30e-19,1;CL:0002077,5.77e-19,34;CL:0000075,7.15e-17,27;CL:0000333,1.24e-10,41;CL:0000221,1.21e-08,72;CL:0000133,1.66e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!4.08e-10!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;1.42e-36;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.70e-36,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.89e-39!57;UBERON:0005068!5.89e-39!57;UBERON:0006241!5.89e-39!57;UBERON:0007135!5.89e-39!57;UBERON:0002616!3.67e-34!59;UBERON:0000955!5.73e-28!69;UBERON:0006238!5.73e-28!69;UBERON:0002780!7.82e-28!41;UBERON:0001890!7.82e-28!41;UBERON:0006240!7.82e-28!41;UBERON:0003080!4.37e-27!42;UBERON:0001893!1.43e-26!34;UBERON:0002020!1.81e-26!34;UBERON:0003528!1.81e-26!34;UBERON:0003075!4.14e-26!86;UBERON:0007284!4.14e-26!86;UBERON:0005743!9.65e-26!86;UBERON:0001017!4.99e-25!82;UBERON:0002298!5.49e-25!8;UBERON:0002346!1.09e-24!90;UBERON:0002791!5.29e-24!33;UBERON:0007023!1.81e-23!115;UBERON:0002619!2.92e-23!22;UBERON:0000073!8.89e-23!94;UBERON:0001016!8.89e-23!94;UBERON:0001950!1.55e-21!20;UBERON:0001869!2.65e-21!32;UBERON:0000956!2.77e-20!25;UBERON:0000203!2.77e-20!25;UBERON:0003056!1.29e-19!61;UBERON:0000033!9.99e-18!123;UBERON:0000153!1.26e-16!129;UBERON:0007811!1.26e-16!129;UBERON:0004121!6.80e-15!169;UBERON:0000924!2.13e-14!173;UBERON:0006601!2.13e-14!173;UBERON:0001896!1.06e-13!3;UBERON:0005290!1.06e-13!3;UBERON:0010096!1.06e-13!3;UBERON:0006331!3.08e-13!3;UBERON:0003076!7.04e-13!15;UBERON:0003057!7.04e-13!15;UBERON:0000988!1.22e-12!3;UBERON:0004733!5.38e-12!12;UBERON:0002028!5.38e-12!12;UBERON:0007277!5.38e-12!12;UBERON:0000200!3.94e-11!6;UBERON:0004732!5.02e-11!13;UBERON:0002148!4.17e-09!2;UBERON:0009662!4.17e-09!2;UBERON:0001872!2.90e-08!5;UBERON:0001871!2.99e-08!7;UBERON:0002308!1.31e-07!9;UBERON:0000125!1.31e-07!9;UBERON:0000025!1.61e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;2.18e-11;15!UBERON:0007376;2.18e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,2.51e-11,15;UBERON:0007376,2.51e-11,15;UBERON:0007383,2.51e-11,15 | |||
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| ||
|short_description=p3@FAM209A | |||
}} | }} |
Latest revision as of 03:18, 17 September 2015
Short description: | p3@FAM209A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FAM209A_5end |
Coexpression cluster: | C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis |
Association with transcript: | -364bp_to_ENST00000481560_5end |
EntrezGene: | FAM209A |
HGNC: | 16100 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 1.51e-54 | 3 |
melanocyte | 3.90e-45 | 10 |
melanoblast | 3.90e-45 | 10 |
pigment cell | 2.47e-32 | 14 |
neurecto-epithelial cell | 1.04e-22 | 20 |
dark melanocyte | 1.30e-19 | 1 |
ecto-epithelial cell | 5.77e-19 | 34 |
columnar/cuboidal epithelial cell | 7.15e-17 | 27 |
migratory neural crest cell | 1.24e-10 | 41 |
ectodermal cell | 1.21e-08 | 72 |
neurectodermal cell | 1.66e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 2.51e-11 | 15 |
outer epithelium | 2.51e-11 | 15 |
enveloping layer of ectoderm | 2.51e-11 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.70e-36 | 2 |